HG10001245 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001245
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription factor E2F isoform 1
LocationChr09: 15373664 .. 15373906 (+)
RNA-Seq ExpressionHG10001245
SyntenyHG10001245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCGTGAAGATAGTGCCTCCTTTGGACCAAGCATACGTTAGATGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCTAAGAAATCCTCGTGCCGTGAAGCCTCCGGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGATGATCCAGATCTCGCACATTTACTCAAATAG

mRNA sequence

ATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCGTGAAGATAGTGCCTCCTTTGGACCAAGCATACGTTAGATGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCTAAGAAATCCTCGTGCCGTGAAGCCTCCGGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGATGATCCAGATCTCGCACATTTACTCAAATAG

Coding sequence (CDS)

ATGGGAAACAAACCCGTGAAGCAACCACAGGAACAAAGGGAAGAAATCTTCGTGAAGATAGTGCCTCCTTTGGACCAAGCATACGTTAGATGGCTCGCTCGGGATCTCGAGAGGATTCATGGCTTCACCCTAAGAAATCCTCGTGCCGTGAAGCCTCCGGATCACTACATAGAGTTCATGCGCTTGAATGGATGGTTGGACGTGAGTTTAGATGATCCAGATCTCGCACATTTACTCAAATAG

Protein sequence

MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFMRLNGWLDVSLDDPDLAHLLK
Homology
[Close]
BLAST of HG10001245 vs. NCBI nr
Match: XP_022152955.1 (uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncharacterized protein LOC111020571 [Momordica charantia])

HSP 1 Score: 161.0 bits (406), Expect = 4.3e-36
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQ + QREEIF+KIVPPLDQAYVRWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLAHL K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of HG10001245 vs. NCBI nr
Match: XP_038901668.1 (uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901671.1 uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901672.1 uncharacterized protein LOC120088440 [Benincasa hispida])

HSP 1 Score: 159.8 bits (403), Expect = 9.5e-36
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGN+ VKQPQEQR EIF+KIVPPLDQAY+RWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNRAVKQPQEQRGEIFLKIVPPLDQAYLRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLAHL K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of HG10001245 vs. NCBI nr
Match: XP_016900705.1 (PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >TYJ96066.1 uncharacterized protein E5676_scaffold182G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 1.0e-34
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQPQ   EE+F+KIVPPLDQ YVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLA LLK
Sbjct: 61 RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of HG10001245 vs. NCBI nr
Match: XP_021278844.1 (uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao] >EOY33334.1 Uncharacterized protein TCM_041290 isoform 1 [Theobroma cacao])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVK  QEQREEI +KIVPPLDQAYVRWLARD+ERIHGFT RNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDV LDDPDLAHL K
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of HG10001245 vs. NCBI nr
Match: KAA0061729.1 (uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-33
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGN+PVKQPQ   EE+F+KIVPPLDQ YVRWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNRPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLA LLK
Sbjct: 61 RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of HG10001245 vs. ExPASy TrEMBL
Match: A0A6J1DJ99 (uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020571 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.1e-36
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQ + QREEIF+KIVPPLDQAYVRWLARDLERIHGFT RNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQQEVQREEIFLKIVPPLDQAYVRWLARDLERIHGFTPRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLAHL K
Sbjct: 61 RLNGWLDVSLDDPDLAHLFK 80

[Close]
BLAST of HG10001245 vs. ExPASy TrEMBL
Match: A0A1S4DYB2 (uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQPQ   EE+F+KIVPPLDQ YVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLA LLK
Sbjct: 61 RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of HG10001245 vs. ExPASy TrEMBL
Match: A0A5D3BAZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00250 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 5.1e-35
Identity = 73/80 (91.25%), Postives = 75/80 (93.75%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVKQPQ   EE+F+KIVPPLDQ YVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM
Sbjct: 1  MGNKPVKQPQ---EEVFLKIVPPLDQTYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDVSLDDPDLA LLK
Sbjct: 61 RLNGWLDVSLDDPDLARLLK 77

[Close]
BLAST of HG10001245 vs. ExPASy TrEMBL
Match: A0A061GZN3 (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-34
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVK  QEQREEI +KIVPPLDQAYVRWLARD+ERIHGFT RNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDV LDDPDLAHL K
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of HG10001245 vs. ExPASy TrEMBL
Match: A0A6J0ZWT3 (uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC110412594 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-34
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLRNPRAVKPPDHYIEFM 60
          MGNKPVK  QEQREEI +KIVPPLDQAYVRWLARD+ERIHGFT RNPRAVKPPDHYIE+M
Sbjct: 1  MGNKPVK--QEQREEILLKIVPPLDQAYVRWLARDIERIHGFTPRNPRAVKPPDHYIEYM 60

Query: 61 RLNGWLDVSLDDPDLAHLLK 81
          RLNGWLDV LDDPDLAHL K
Sbjct: 61 RLNGWLDVDLDDPDLAHLFK 78

[Close]
BLAST of HG10001245 vs. TAIR 10
Match: AT5G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-26
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLR-NPRAVKPPDHYIEF 60
          MGNK     +E+REEI +KIVPPLD+ ++RWLARDL+R+HGF  + N RA+ PPD YIEF
Sbjct: 1  MGNK-ATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 61 MRLNGWLDVSLDDPDLAHLLK 81
          MRLNG LDV LDDPDLAHL K
Sbjct: 61 MRLNGSLDVDLDDPDLAHLFK 80

[Close]
BLAST of HG10001245 vs. TAIR 10
Match: AT5G22210.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 114.4 bits (285), Expect = 4.3e-26
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MGNKPVKQPQEQREEIFVKIVPPLDQAYVRWLARDLERIHGFTLR-NPRAVKPPDHYIEF 60
          MGNK     +E+REEI +KIVPPLD+ ++RWLARDL+R+HGF  + N RA+ PPD YIEF
Sbjct: 1  MGNK-ATTVKEEREEIHLKIVPPLDKVFLRWLARDLQRVHGFKPKNNTRAITPPDSYIEF 60

Query: 61 MRLNGWLDVSLDDPDLAHLLK 81
          MRLNG LDV LDDPDLAHL K
Sbjct: 61 MRLNGSLDVDLDDPDLAHLFK 80

The following BLAST results are available for this feature:
BLAST of HG10001245 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152955.14.3e-3692.50uncharacterized protein LOC111020571 [Momordica charantia] >XP_022152956.1 uncha... [more]
XP_038901668.19.5e-3691.25uncharacterized protein LOC120088440 [Benincasa hispida] >XP_038901669.1 unchara... [more]
XP_016900705.11.0e-3491.25PREDICTED: uncharacterized protein LOC103491432 [Cucumis melo] >XP_016900706.1 P... [more]
XP_021278844.11.2e-3388.75uncharacterized protein LOC110412594 [Herrania umbratica] >EOY33333.1 Uncharacte... [more]
KAA0061729.11.5e-3388.75uncharacterized protein E6C27_scaffold212G001040 [Cucumis melo var. makuwa][more]
BLAST of HG10001245 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DJ992.1e-3692.50uncharacterized protein LOC111020571 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A1S4DYB25.1e-3591.25uncharacterized protein LOC103491432 OS=Cucumis melo OX=3656 GN=LOC103491432 PE=... [more]
A0A5D3BAZ55.1e-3591.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A061GZN35.6e-3488.75Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_041290 PE=4 ... [more]
A0A6J0ZWT35.6e-3488.75uncharacterized protein LOC110412594 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
BLAST of HG10001245 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G22210.14.3e-2667.90unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G22210.24.3e-2667.90unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001245.1HG10001245.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051301 cell division
biological_process GO:0010020 chloroplast fission
cellular_component GO:0032153 cell division site
cellular_component GO:0009507 chloroplast
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding