HG10001170 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001170
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionphotosystem II 5 kDa protein, chloroplastic
LocationChr09: 14605450 .. 14605770 (-)
RNA-Seq ExpressionHG10001170
SyntenyHG10001170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATGGCTATGACAGCCTCCTTCCTCCCCGCCGCCACCGCCAAGCAACCCTCCGCCGCCTCCCGCCGAGCCCTTGTCGTCGCCAAGGCCTCCACCTCTAACGACACCTCCAATGTCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGACAAGGGCGGCGGGAGTTGGTGGCGGCCGCTGTCACCGTGGCAGCAGCGACCTTGGCGAAGGCGGCGATGGCTGATGAGCCGCCACGTGGCTCCCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCTCGTATTTGCCGCAAGTGA

mRNA sequence

ATGGCTTCCATGGCTATGACAGCCTCCTTCCTCCCCGCCGCCACCGCCAAGCAACCCTCCGCCGCCTCCCGCCGAGCCCTTGTCGTCGCCAAGGCCTCCACCTCTAACGACACCTCCAATGTCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGACAAGGGCGGCGGGAGTTGGTGGCGGCCGCTGTCACCGTGGCAGCAGCGACCTTGGCGAAGGCGGCGATGGCTGATGAGCCGCCACGTGGCTCCCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCTCGTATTTGCCGCAAGTGA

Coding sequence (CDS)

ATGGCTTCCATGGCTATGACAGCCTCCTTCCTCCCCGCCGCCACCGCCAAGCAACCCTCCGCCGCCTCCCGCCGAGCCCTTGTCGTCGCCAAGGCCTCCACCTCTAACGACACCTCCAATGTCAACTTGGAGATCAAGAATGTGAAGGTGGAGAGCAGACAAGGGCGGCGGGAGTTGGTGGCGGCCGCTGTCACCGTGGCAGCAGCGACCTTGGCGAAGGCGGCGATGGCTGATGAGCCGCCACGTGGCTCCCCTGAAGCCAAGCAGAAGTATGCTCCAATCTGTGTCACAATGCCCACTGCTCGTATTTGCCGCAAGTGA

Protein sequence

MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK
Homology
[Close]
BLAST of HG10001170 vs. NCBI nr
Match: XP_038901593.1 (photosystem II 5 kDa protein, chloroplastic [Benincasa hispida])

HSP 1 Score: 174.1 bits (440), Expect = 6.4e-40
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLPA   KQPS A+RRALVVAKASTS+D SNVNLEIKNVKVE+RQGRRELV
Sbjct: 1   MASMAMTASFLPATANKQPSTAARRALVVAKASTSSDASNVNLEIKNVKVENRQGRRELV 60

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK
Sbjct: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 106

[Close]
BLAST of HG10001170 vs. NCBI nr
Match: XP_008449703.1 (PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA0041421.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa] >TYJ96132.1 photosystem II 5 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELV
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELV 112

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPTARICRK
Sbjct: 113 AAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]
BLAST of HG10001170 vs. NCBI nr
Match: XP_004143237.1 (photosystem II 5 kDa protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.3e-37
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLP    KQPS+ +RR L+VAKASTSN  SNVN+E+KNVKVESRQGRRELV
Sbjct: 1   MASMAMTASFLPTTATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELV 60

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPTARICRK
Sbjct: 61  AAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 106

[Close]
BLAST of HG10001170 vs. NCBI nr
Match: XP_022944588.1 (photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1 photosystem II 5 kDa protein, chloroplastic [Cucurbita maxima])

HSP 1 Score: 144.4 bits (363), Expect = 5.5e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGR 60
           MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           RELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]
BLAST of HG10001170 vs. NCBI nr
Match: KAG6570402.1 (Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010275.1 Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 144.1 bits (362), Expect = 7.1e-31
Identity = 91/113 (80.53%), Postives = 95/113 (84.07%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPS---AASRRALVVAKASTS----NDTSNVNLEIKNVKVESR 60
           MASM++TASFLP  TA QPS   AA+RRAL V KASTS    +  SN NLEIKNVKVES 
Sbjct: 1   MASMSITASFLP-FTATQPSAAAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESS 60

Query: 61  QGRRELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           QGRRELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  QGRRELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 112

[Close]
BLAST of HG10001170 vs. ExPASy Swiss-Prot
Match: Q39195 (Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBT PE=3 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-14
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASM MTA+F P A AK PSA   R L V +ASTS++T   +LE+K  +  S   RR+L+
Sbjct: 1   MASMTMTATFFP-AVAKVPSATGGRRLSVVRASTSDNTP--SLEVK--EQSSTTMRRDLM 60

Query: 61  AAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTMPTARICR 106
             A   A  +LAK AMA  +EP RG+  AK+KYA +CVTMPTA+ICR
Sbjct: 61  FTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

[Close]
BLAST of HG10001170 vs. ExPASy Swiss-Prot
Match: B3EWI4 (Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 54/109 (49.54%), Postives = 69/109 (63.30%), Query Frame = 0 

Query: 1   MASMAMTASFLPAAT---AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRR 60
           MAS+ M +SFL  +T   AK PS A+RR +V+ KA    +    N+ I   +     GRR
Sbjct: 1   MASITMMSSFLGGSTVAPAKVPS-ANRRGVVMVKAMHEGEN---NVVISKNEESKNSGRR 60

Query: 61  ELVAAAVTVAAATLAKAAMAD-EPPRGSPEAKQKYAPICVTMPTARICR 106
           EL  A    AA ++AK AMAD EP RG+PEAK+KY+ +CVT PTARICR
Sbjct: 61  ELFFAMAAAAACSVAKTAMADEEPKRGTPEAKKKYSSVCVTNPTARICR 105

[Close]
BLAST of HG10001170 vs. ExPASy Swiss-Prot
Match: P31336 (Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSBT PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 5.0e-11
Identity = 50/106 (47.17%), Postives = 63/106 (59.43%), Query Frame = 0 

Query: 1   MASMAMTASFLPAAT-AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRREL 60
           MAS+ MT SFL      K     ++R LVVA A+      +V +  +  K E   GRRE+
Sbjct: 1   MASITMTTSFLSTTNLTKGSPRITQRRLVVANAAKGAQVESVQMSGER-KTEGNNGRREM 60

Query: 61  VAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICR 106
           + AA   A  ++A  A A EP RGS EAK+ YAP+CVTMPTARICR
Sbjct: 61  MFAAAAAAICSVAGVATA-EPKRGSAEAKKAYAPVCVTMPTARICR 104

[Close]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match: A0A5A7TID9 (Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00980 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELV
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELV 112

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPTARICRK
Sbjct: 113 AAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match: A0A1S3BML8 (photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491503 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.2e-39
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLP    KQPSA  RRAL+VAKASTSN+TSNVNLE+KNVKVESRQGRRELV
Sbjct: 53  MASMAMTASFLPTTATKQPSATPRRALIVAKASTSNETSNVNLEVKNVKVESRQGRRELV 112

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPTARICRK
Sbjct: 113 AAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 158

[Close]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match: A0A0A0KIB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.5e-38
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASMAMTASFLP    KQPS+ +RR L+VAKASTSN  SNVN+E+KNVKVESRQGRRELV
Sbjct: 1   MASMAMTASFLPTTATKQPSSTARRPLIVAKASTSNQASNVNMEVKNVKVESRQGRRELV 60

Query: 61  AAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           AAAVTVAAATLAKAAMADEP RGSPEAKQKYAPICVTMPTARICRK
Sbjct: 61  AAAVTVAAATLAKAAMADEPARGSPEAKQKYAPICVTMPTARICRK 106

[Close]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match: A0A6J1J874 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484352 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGR 60
           MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           RELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match: A0A6J1FY72 (photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449001 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.6e-31
Identity = 86/110 (78.18%), Postives = 92/110 (83.64%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTS----NDTSNVNLEIKNVKVESRQGR 60
           MASM++TASFLP    +  +AA+RRAL V KASTS    +  SN NLEIKNVKVES QGR
Sbjct: 1   MASMSITASFLPFTATQPSAAAARRALFVTKASTSAAATDSNSNANLEIKNVKVESSQGR 60

Query: 61  RELVAAAVTVAAATLAKAAMADEPPRGSPEAKQKYAPICVTMPTARICRK 107
           RELVAAAVTVAAAT AKAAMADEPPRGS EAKQKYAPICVTMPTARICRK
Sbjct: 61  RELVAAAVTVAAATFAKAAMADEPPRGSAEAKQKYAPICVTMPTARICRK 110

[Close]
BLAST of HG10001170 vs. TAIR 10
Match: AT1G51400.1 (Photosystem II 5 kD protein )

HSP 1 Score: 80.1 bits (196), Expect = 1.2e-15
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 0 

Query: 1   MASMAMTASFLPAAT--AKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVE-SRQGRR 60
           MASM MT+SFLP  +      S+ SRR+L V KAS S +T++    ++N K E S + RR
Sbjct: 1   MASMTMTSSFLPTVSNLPANISSNSRRSLTVVKASGSENTTS----LENKKQEQSMKMRR 60

Query: 61  ELVAAAVTVAAATLAKAAMA-DEPPRGSPEAKQKYAPICVTMPTARICR 106
           +LV  A   A  +LAK AMA DEP RG+  AK+KYAP+CVTMPTA+ICR
Sbjct: 61  DLVFTAAAAAVCSLAKVAMADDEPKRGTEAAKKKYAPVCVTMPTAKICR 105

[Close]
BLAST of HG10001170 vs. TAIR 10
Match: AT3G21055.1 (photosystem II subunit T )

HSP 1 Score: 79.3 bits (194), Expect = 2.0e-15
Identity = 57/107 (53.27%), Postives = 72/107 (67.29%), Query Frame = 0 

Query: 1   MASMAMTASFLPAATAKQPSAASRRALVVAKASTSNDTSNVNLEIKNVKVESRQGRRELV 60
           MASM MTA+F P A AK PSA   R L V +ASTS++T   +LE+K  +  S   RR+L+
Sbjct: 1   MASMTMTATFFP-AVAKVPSATGGRRLSVVRASTSDNTP--SLEVK--EQSSTTMRRDLM 60

Query: 61  AAAVTVAAATLAKAAMA--DEPPRGSPEAKQKYAPICVTMPTARICR 106
             A   A  +LAK AMA  +EP RG+  AK+KYA +CVTMPTA+ICR
Sbjct: 61  FTAAAAAVCSLAKVAMAEEEEPKRGTEAAKKKYAQVCVTMPTAKICR 102

The following BLAST results are available for this feature:
BLAST of HG10001170 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901593.16.4e-4092.45photosystem II 5 kDa protein, chloroplastic [Benincasa hispida][more]
XP_008449703.12.4e-3990.57PREDICTED: photosystem II 5 kDa protein, chloroplastic [Cucumis melo] >KAA004142... [more]
XP_004143237.11.3e-3786.79photosystem II 5 kDa protein, chloroplastic [Cucumis sativus][more]
XP_022944588.15.5e-3178.18photosystem II 5 kDa protein, chloroplastic [Cucurbita moschata] >XP_022986667.1... [more]
KAG6570402.17.1e-3180.53Photosystem II 5 kDa protein, chloroplastic, partial [Cucurbita argyrosperma sub... [more]
BLAST of HG10001170 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q391952.8e-1453.27Photosystem II 5 kDa protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=P... [more]
B3EWI41.6e-1249.54Photosystem II 5 kDa protein, chloroplastic OS=Petunia hybrida OX=4102 PE=1 SV=1[more]
P313365.0e-1147.17Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum OX=3635 GN=PSB... [more]
BLAST of HG10001170 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TID91.2e-3990.57Photosystem II 5 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A1S3BML81.2e-3990.57photosystem II 5 kDa protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103491... [more]
A0A0A0KIB26.5e-3886.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G439930 PE=4 SV=1[more]
A0A6J1J8742.6e-3178.18photosystem II 5 kDa protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FY722.6e-3178.18photosystem II 5 kDa protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of HG10001170 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51400.11.2e-1553.21Photosystem II 5 kD protein [more]
AT3G21055.12.0e-1553.27photosystem II subunit T [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR34940:SF4PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..106
IPR040296Photosystem II 5kDa protein, chloroplasticPANTHERPTHR34940PHOTOSYSTEM II 5 KDA PROTEIN, CHLOROPLASTICcoord: 1..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001170.1HG10001170.1mRNA