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HG10001166 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCCCTTCAGTAGCAACAATGGCCACAAGAACCAGAAGAAATTTACCCAACTTGAAGCTCACTAAGAAAATCAAGAAGACGAAGAAACAACAGCAGCAGCAGAAGCAGATTCCGGCCGCCACACAAAACGATTTCGTTCAATTTACCGACGACTGTTCTGACATCGACGGCGGCTGCAGCACTCCAAAATCCGAGAGACACAGAATCCCGGAGATTCTGACGTGTCCGCCGGCGCCGAAGAAACCAAGACCCGTTTCCGATTGCTCATTCCGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTTGTAGCCCTGCCGGTGCCGGACATTTCAGTCTGA ATGGCCCCTTCAGTAGCAACAATGGCCACAAGAACCAGAAGAAATTTACCCAACTTGAAGCTCACTAAGAAAATCAAGAAGACGAAGAAACAACAGCAGCAGCAGAAGCAGATTCCGGCCGCCACACAAAACGATTTCGTTCAATTTACCGACGACTGTTCTGACATCGACGGCGGCTGCAGCACTCCAAAATCCGAGAGACACAGAATCCCGGAGATTCTGACGTGTCCGCCGGCGCCGAAGAAACCAAGACCCGTTTCCGATTGCTCATTCCGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTTGTAGCCCTGCCGGTGCCGGACATTTCAGTCTGA ATGGCCCCTTCAGTAGCAACAATGGCCACAAGAACCAGAAGAAATTTACCCAACTTGAAGCTCACTAAGAAAATCAAGAAGACGAAGAAACAACAGCAGCAGCAGAAGCAGATTCCGGCCGCCACACAAAACGATTTCGTTCAATTTACCGACGACTGTTCTGACATCGACGGCGGCTGCAGCACTCCAAAATCCGAGAGACACAGAATCCCGGAGATTCTGACGTGTCCGCCGGCGCCGAAGAAACCAAGACCCGTTTCCGATTGCTCATTCCGACGATCACCCATTGCCTTTTTTGCCCCTCCAGAATTAGAGCTCTTCTTCTTTGTAGCCCTGCCGGTGCCGGACATTTCAGTCTGA MAPSVATMATRTRRNLPNLKLTKKIKKTKKQQQQQKQIPAATQNDFVQFTDDCSDIDGGCSTPKSERHRIPEILTCPPAPKKPRPVSDCSFRRSPIAFFAPPELELFFFVALPVPDISV Homology
BLAST of HG10001166 vs. NCBI nr
Match: XP_038902266.1 (cyclin-dependent protein kinase inhibitor SMR13 [Benincasa hispida]) HSP 1 Score: 200.3 bits (508), Expect = 9.4e-48 Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0
BLAST of HG10001166 vs. NCBI nr
Match: XP_022986710.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita maxima]) HSP 1 Score: 190.7 bits (483), Expect = 7.5e-45 Identity = 103/123 (83.74%), Postives = 104/123 (84.55%), Query Frame = 0
BLAST of HG10001166 vs. NCBI nr
Match: KAG7010272.1 (Cyclin-dependent protein kinase inhibitor SMR13, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43 Identity = 101/120 (84.17%), Postives = 104/120 (86.67%), Query Frame = 0
BLAST of HG10001166 vs. NCBI nr
Match: XP_023522908.1 (cyclin-dependent protein kinase inhibitor SMR15-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 186.0 bits (471), Expect = 1.8e-43 Identity = 101/121 (83.47%), Postives = 103/121 (85.12%), Query Frame = 0
BLAST of HG10001166 vs. NCBI nr
Match: XP_022944116.1 (cyclin-dependent protein kinase inhibitor SMR13 [Cucurbita moschata]) HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43 Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.2e-13 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy Swiss-Prot
Match: Q3ECS5 (Cyclin-dependent protein kinase inhibitor SMR9 OS=Arabidopsis thaliana OX=3702 GN=SMR9 PE=3 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 3.9e-12 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy TrEMBL
Match: A0A6J1JET4 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita maxima OX=3661 GN=LOC111484378 PE=4 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45 Identity = 103/123 (83.74%), Postives = 104/123 (84.55%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy TrEMBL
Match: A0A6J1FTJ6 (cyclin-dependent protein kinase inhibitor SMR13 OS=Cucurbita moschata OX=3662 GN=LOC111448665 PE=4 SV=1) HSP 1 Score: 185.3 bits (469), Expect = 1.5e-43 Identity = 101/123 (82.11%), Postives = 104/123 (84.55%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy TrEMBL
Match: A0A0A0L0Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G291940 PE=4 SV=1) HSP 1 Score: 176.4 bits (446), Expect = 7.1e-41 Identity = 100/123 (81.30%), Postives = 105/123 (85.37%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy TrEMBL
Match: A0A6J1D3Z6 (cyclin-dependent protein kinase inhibitor SMR15-like OS=Momordica charantia OX=3673 GN=LOC111017372 PE=4 SV=1) HSP 1 Score: 151.4 bits (381), Expect = 2.4e-33 Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0
BLAST of HG10001166 vs. ExPASy TrEMBL
Match: A0A6J1K7R4 (cyclin-dependent protein kinase inhibitor SMR9-like OS=Cucurbita maxima OX=3661 GN=LOC111491400 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 6.0e-32 Identity = 85/117 (72.65%), Postives = 91/117 (77.78%), Query Frame = 0
BLAST of HG10001166 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 77.4 bits (189), Expect = 8.6e-15 Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0
BLAST of HG10001166 vs. TAIR 10
Match: AT1G51355.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20898.1); Has 52 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 72.4 bits (176), Expect = 2.8e-13 Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 0
BLAST of HG10001166 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 1.4e-04 Identity = 21/48 (43.75%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of HG10001166 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.7 bits (99), Expect = 2.3e-04 Identity = 20/48 (41.67%), Postives = 28/48 (58.33%), Query Frame = 0
BLAST of HG10001166 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 42.4 bits (98), Expect = 3.1e-04 Identity = 30/96 (31.25%), Postives = 48/96 (50.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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