HG10001058 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001058
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionoligoribonuclease
LocationChr09: 13620262 .. 13632806 (-)
RNA-Seq ExpressionHG10001058
SyntenyHG10001058
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGAGCCACTTGTAAACGCATTCTCAGTGTTGGAGCTCGACGTTGAAGATGATTATGTTTGCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTCCCCTTCAAGAATAGGTTGGCTTATGACGTGATTTAAGGTGTTCTCGTTCTTAAGTGTCAAGGTTGAAGGTTCTGAGAACTTCAGGACTTCGATTGCCTTCCGTTAGTCTCTTAGAGGCGCAGGAATTAGGCCCAGATGGTCTCTTAAGCTGTATTAGAAATTTGAAGTGATATAGTAAGAAACTATTCGTCTTTGTGCCTGTCTGGTTTTGATTTCTGCAGCTTGTGGATATTCACAAGGCAGAAACCCCATGAATCTAAGCTGCCAGTATAAACTTTTTTCAGTCTCAATTGAAAAATAATTGAAACAGTATTGGCATATAAGATAGTTTCTTAATGTACTTTGGTCTTAGTTCTTTCACTTAATATTTAGTTATTTTTCTAACTTGGGTTTTCTCATTGTTGGTTCTATGCTAAATTAATCTTTCACAAAAAATGTATATTATAGTAATCCATCTTCTTAGCGTGGATAACACCATTAACGTTTCATGCACAGTGATTAGGATACAGTACTTCAAGTTTGGTTGATGGTTGTGAGCATTTCCTTTTCTATAGAAGTTCCTCTCCCATGTAATCCTTGAAAAAATGTATGATCAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATGTTCTGGCGGGAGAAAGACACAAGCAAGGTCAACCAGATATAGCTGCAGAAAATTACAAATTTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTAATTAACGACTACTGCTAATCACTATGCTTTAAACTTGTATAACATGGATTCGGGAGTGGGAGTGGATTATAAGAAACTCTCGTTCCCCCTTTTCTATGGTAGACTGGAGCTTTTATTTATTATTATTATTATTTTTTTGAATTCATTGTATTCTTTCATTCTTTCTCAATGAAAGGTCGGTTATTCATCAAAAAGAAATAATGTAGAGATTTCAAAATTCTACATTGGGATGATGCCTATGCTCCATGGCACTGTTTGCTAATTTTTTATTCACATAATGAAAGGGGGGTTTTACTATTAGATTTATCTTTACTCAAGGTTGAACGGACTTGATATTCGACATATCGCTTACAACTTTTTATTACTCCATTTTTATGGAAATATTTGCTCCTTACATTTCTTTTAGTCTTCTTTTGTGCCAATGAGATGACTTCATTCTTTTTATTTCTAATTTCATACCTTCAATGAAGTTGTCTGTCCCCACCTCCTCCCTAAAAAAAGAATAAAAAAATTAAAATGAAACTATAACCTCCACAGCTTTCTCAAAACTCATATCCTATGGTTTCTCTTTATGGAAACAAGATTATATCCCATGGTTTTTCTATATTGAGAAGATAAATCCTACAATCCTATAAGTCTAAGTGAAGTGAAGGCCAAGATATGCTGGAGGTGGGGGATTAATCCCTTGGGAGACTTCACCACCAAATTGATTACATAGACAAATAACAAATTGAAAGCTCCTATGGCGAGAATGATCTGGAATTTTAATGTTCCTAAAAAGTGAAAAATTTCCTTCAGATCATTAGCTTTAGGAGCTTCAACACCATTGATCGGTTCCAGAGAAAGTTCCCGAATTGATCTTTGTCCTATCGGTTTGTAGCTTAGGTCTAAAACAGATGGAATCTTTGATCATATTTTCCTTCACTATGGTTGGACTCAAGTTGTTGGCAGAGTTTGGTTTACTCTGCTGCTTACGGTACTGTATTGATGATTGGCTGCTAGGATGTTTGACTGGCATTCATTTTAAGAACGTGGCTAAGATTTTGTTAGCCCATTAAACCGACACACTCATGTAACCATTAAAACCAACCCAAGTAATTCCTTAAAGCCACTATTTCAACCAAGGATATGGAACGTGTGAGATCTGAAAAGAAAAAACTCTTGAACATAATTGTAGTTACTCCACTATTTCTAAATTAAACCCCAAAAAACATATTTTAAATCTTTCTCAAACTTTTTGCTTTCCTCACCTTAACACTCTATATTTCCTAAGTTGTATATAACATTCATCATTTTCCTCCATTCTCTATTGACACCAACTAACTTTTTTTTGCCCCTTCTTCTTGTCTTATTTTCAATTGTTACATTGACATGTCTTCAGAAAATTATATCTTGCTCAAGAATTTGGAGCCATTTCAAAAAGAGTGGAGTGTAAAAATCAAGGTTATTCGAAGAGGAACTGTGGATGTATATATATTGTAATTAGTCTCTTTATGATCATGCTTGATTGGAAGGCTTTTCTTACCAAGAAAAAGATTGTATACTAGGGTTGTTATACACTGGACCTAAATTTTTGAAGTATATTCTTTGATGACAATGAATATTTGAGGTTTGTAGTTAATCTTTAAGGTTGGTTTTTCTGTGTCTGCCACACTCAAGGCTTTGGGGCAAAAGAAATTGCAACCAACAAAAATGATCACTAATCTGAACCTATATTTTCCGTTCAAGTTTGTCTCTACTCTTTAGTAGGTGAAGTTATGTTTTGAGTTAAACTACATGCATGCCTCTTTTTTCCTTATTTTTTTTATAATTGTTTTCTGACATCCTAATTAAATAAGGTTTCTATGTTCTTGGCCATGTGGAAGCCAAAATTCTAGTTAGACTTCAGTTAGACTCTTTTTACTATTCCATGCAACATCTTTGTCCAGAAAAGAAGGCCTAATCATTGTTGATTGATGATACTATCCTGGCTTTTTTTTAAAGATAACAGGAGCAGCGTATAAAACATTTGGGATGGGGAGTTGAGGGTTAATGCCTCTAATTGGGCTTTTCATTTCCAAAGAATTTTAGAACTGTCCATTTGTGTGTGCTAATGTGACTTTTGAGATCCGTTTCCAATATCTTTTTTGCCTTCTCTGTAATATTTTAAAATGTTGAAACCTTTTGACTTATATGCAGGTTTAAATGTTGAAACAGATAGAATACTGGAGATAGCTTGTATAATTACCAATGGCAGTCTGACCAAATTGGTTGAGGTATCTTTGCCGTTGGCTATTCAACATTGTTTTCCGTGCATGCACTCCCCCCTGTTTGTTTGTAAAATTGAGTTTTGTACTTTCTTTGACTTCACTACACCATTGCCAAATACTCATTGTTGTTTATTGTTGGCTATCTGATCTGTCAGTGATTTCGTCTGTCAATAGAGTAAAGTAGGAAATACAATATATTTTTTATAAGAGAGCAAATAAAATAAAATATAGGTTTGAAAAGAATCCTGACCTCTGTATCTCACCGTCAGTCTTTGCTGCCTAAAACAAATGAGAGAAGTTCAAAAGTTGCCATGTTATTCTCATCACTTCTTTATGCTTCATTATGTATTCTACTTATTTTTCTAGGGTCCTGATTTAGTGATTAACCAATCAAAAGAATGTCTAGAGAAAATGGGAGAATGGTGTCAAAGTCATCATGCTGCCAGTGGTAAGAACCGTAAAGCTTAATCAATATAGCACTTCATTGTATTTTAGTGGCTCCTGGTTTTCTGCCTGTTTTTTTTTTTTGTGCTTGGGGATGAAACAAATTGCGATTTAACACTTCCATTATTTAGGATTGACAAAAAAAGTGCTGCAAAGTTCAATTAGTGAACGAGAAGCTGAAAAACAGGTAAGTAAAAATTTCTCTGTTGCTTTTGCTCCTCCCCGCTGGATTTAATTTTTGTTATTAACATCTTTATTTATTTATTAATGTATGTGATTTGATTTATATATACATATATAATATATCTATATATAATTTTCTGTGTATTTTTCATTTTATCTGAATAACAGCTTGGTCTTCTATATATTTTTTTTTAATTTAAAAAAGTGTCATTTGATCTATGTATTATTGTGATAAAATTTTGGGTTTAAATCCTATTTGATCCTTGAATTTTTAATTTTGTTCTATTTTGGTCTTGAACTTTCCGTTTTGGTCCCTAATTTTCAAATGGGACCTGTTTTTTTTCCTTGCTATTAAGATTTTGTTAATAGGCTAATGGATTTGTGGCGTGTCTTTAACCAATGGAATGAACACCTCACACTAATTTTGAAGCAAATACCTTACCTGAATAAAACCCTAGTTGGCCTGCATGTGTGGCAGCCTAGTTAAGCCATGTAGGAGCCTAATCGTCTAAAAATATAAGACGACATGGATCTGTTAGCCTATTAACATATTCTTAATGGCAAGGATCAAAATAGGCATTATAGGCATTATTTAAAAGTATCGGGATCAAAACAAATGTTTTAAATGTTCAGGGACCAAAATAGGATTTGAACCTAAATTTTATGGTGTCGAGGTGCATGAAAGCTGACCCGGACACTCACGGATATCAAGAAACCTAAATTTTATGGTGCCTTGTGGCCATATGCAAGAACTCTGATGGTTCACTGTGACACAGGCAATGTTTTAAAAGGCCCTCTCCGGCGCGCGCCTAAGCTCAAGGCGAGGTTCACAAAATAAAGCGCGCCTCAGGCACGCGCCTTTTGTGAAACCCCAAGGCTCAAAGTCCTAGACCTTGGGCTTTTTCATTATTTTTAAAAAATTGTAATAATTAAGGGTTTTTTTTTTTTTTATTAACTAAAAGAATCAAGTTTACTAAGCCTACATACAAAATTTATTGTATTTGGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTATATTTCCACTTCAACTATACTTTCTCTTTTTAATGTAATATTTTTATATATAGTGTGCCTCACGAAAAAAAGTCTGCGCCTTGCGCCTAGGCTCCAGAGGGCCATTGCACCTTAGTGGGCCTTGAGCATTTGAAAACATTGGGCACAGGGAAAATTGGCCTTTTTATTTACAAAGGTTTCTCTGAAAAATGTTTGTTGTTCTGCTATCTAAGCACAAATAGGTTGAAAATCCTGTAATAAATGAACTTGGTATCTCATAATCATAAATAACACCAAGATGACTCTTCTATTTTCTCAATCCAAAGATTTCAAAGAATTATACAAATACCACATAATCCTATGAACCACAAACACGGATATGAATACGGGATACAGATACCATAGGATACAATGATGCATCAATTTCTAGAAAATTAGGATACAAATACCTTAAAAAAAACTATGATATATGTAAATTTAACATAAAGATACTAAATGTAATCCACTAAAAAGCACAAAATGTCAAGTTAATGACAATAGTACAAATACAGTATACATGAGAAACATTGAAATATAATAGTCAATAGAATACAATAGAAAACGTTGGTGGCATGCTAGAGTCAGATTGATCAGAGAAGAAGATTAGAGGGAGAGGTACGAAGATAAATGAAGAAGATGATGTTGAATGATTGAAGTCATTCAAGTGGTTTTTTTTTTTTTTTTTTTTTTCTGTATTTTTTAACCTTGTTCTTTTAGTTTTGGGATGGAGAGTGAGCTTTTTAAGTAGACGGCTTATTATTGGATTGGGGAAGATTAGATGAGTTTTTTTTAAAGGTCCAGCGTGTCCCCTTCACGTATCTGGGAGGGGACATGTATGTTTGATATGAAAAAGAAAAAAAGCAGATATGCAAAATCATGAGTTAGATATGTATCTGATACCGATTCTCTGCCTCACAGAAGTATTTGCACTTCATAGGACCCAACCCATGCAGTTTGGTTCTCATTTTAAAATTATGATAAGAAGAGTAGAACAATGAAGTCTACGTCTACCTTATTAGCATTATTGTGAAGATAATTGATTAATTTCAGCTACATAGCGTAACAAGTTCCAACCAGTAATCCTCCAAAAACCAGATCAGAGAGCCACGTCCTATAGACATTTTTCCAAGGACGTGATCGAATGATCTTTGTTGAAAATAGAAAGCCAACGGCATTGAGAAGACCTGTAATTGTACTTTTTAGGGATCATCAACAAGACCATAAATGTGTGTGTAATCTGGTTAATATCCATCTGTTTGCTCAAATTTTATGCACTGACATTTGTAATTCTGCAGGTTATAGAATTTGTGAAGAAACATGTTGGTAGCTATAAACTACACTTGGCTGGAAATTCAGTTTATATGGATTTTATTTTTTTGAAGGTAGTCTCAAAGCCATATTCTTTATTTTTTCATAATATCACGTACATATAGTGTGTTAGATTATAAGGTAAATGTTTCAGTTTAGTCAATATGTCTATATACCTTTTTTTATGTACTCAACTGTTTCCTGGCTTTTTGGGGTTTGCCTTTGATTCTCTCCTGGGTTATCTGTTTTTCAGCAACTTTTTGTTGCTTTCATTTCCTTAATGAGGGTCGTGTTATCTTCAAAATGAAATTTGTATATTACTTAACATTCAGTGATAGATACCTTATTAAGGTTACGTATGTCTAATCTATTTGCATTATTGAAAATTTCTCTTGAATTAGATTACGTAGCATTTTGAGATTTTTTTTGGTAAGGATTGTGATACGAATGTTATTAGAGTATTGTAAGAGTATATTAGTAATTAGTTAGGGAGGTAGTTATGGTATTAGGTTGAAGGTTCTAAATATAATAAGTGAGAAAGGGGGAGATTGCATTATTTCGGGGAGTGATTTAGAGCTTGACACAAATCTCAAGAGAGAGGGTCCAAGTACCTCGAAGACTTGGTTTATTTGTAGTTTGGTTATCTTTTATATTTCAATACATTTGGGATCTATTGGTGTTCCATTTATGCATGTTCATTATAATGTAACCAAGACTTTTCGTTGGGGTATGCTACTTTCCTCTCCCTTTCTCTCTCTTCCAATTCAGTATCCTCCCTTCGGGTAGTTTTTAAAAAATTTCATACATTGGCATCAGTTGCTTGAACCTTTTATCAGCATGGAGCAAAATTGAGAAATTGATAGGACTTTCTTTTTTTTTTCTCCGATGTAATCATAATGTTATATCATTTCGTATCTTGTTGGGATGTGATGAGGATGCTATGATTGTGTCAACCTAGTTGAGATAACCTGGTGCATCTGCTGATCCAATTCTTTTAGTTTCCATGGATATTATATATTATTGTAATTTGAGGAACAATCTCTTTTCATTTTATCAATGAAAAGTATTGTTTCCGTTTCAGAAAAAAAAAAAAAAAGACTTATCTTTTTTAAGTAAACACTTTTCGCTGATTAGGTGGAGAGGTACAACCCTATTCTATCTACTTCTCAAATCCCAGTGTAGTTAAAATCCACTTCAATTGAGTTAATTACAAAGGAAGTATAGTTACAAAAGGAATCGGAAAATGCATATCACCTAGGGGAATAAAATATAGCTAAATCTAAAACCTCTACCGAACTTCTCTTTAAATAAACTCCTGTTTCTTTCTAACTATATTCTTAAATTAAAGCTTTCTGTGCATTAGGTCACGAAGTCTGGGTCATTTTTTCTGAATCTCTAACTATATTCTTAAATTAAAGCTTTCTGTGCATTAGGTCACGAAGTCTCATTTTTCTGAATCTCTTTAAATAAACTCCTGTTTCTTTCTAACTATATTCTTAAATTAAAGCTCTTTGTGTATTAGGTCACGAAGTCTTGGTCATTTTTTCTGAATCTATGCCCACAAAACACTTGCTCAATATTTTCTGTATCAGAACTTCCCATCACCAAATAGACTTTGAATGGGGAGAAGAGAAAGGCCCATGGTGGCACAGAGAAGCAATAAAAAAGGACCTTGACATTCTGCTACTTTTAAGCCGAGCAAATAGCAGCTAGGATTGGTTTGGGCATCTAGAAATCTTTTTATGGTGTTCACTCGCTCAAAGCAAAGATCCCACGACAGGAATTTTATTTTCTTGCTGCTACTTGTCTTCTAAATAGCATCCCCGAGATGCATCCTTAAGGAAAAGGGTTAAACCCAAGAATTCTTAAAATGATGGTATAATTGAAACGATTCCAGATTGCATAAGCTTCCATCCTCTTTCATTCTGTTCCCTAGTTTAGCTGTAAATTGTCCAGCGAACGGAAGCAACTTGAGGATCTCCACCCACTAATCCCCAGTCTAGATTTCTTCCAGCCAAAATATTCTATGAATTAGTGGTCTTCCATATCGTCAACCTTGGGTATCTCTGTTGAAGTGTTCGACTCTCCACCTAAGTTTCATGCCAAGAGGATGTTCAACCACCTCCCAGTTAACTGTAGTGAAATTCTTAAGGAATATTTGGAGCGCTGAGTTGGTTATTATAGTCTGTGGGTTATAATAGTCTGTGTTTAGGGGTGCAGACTATTTTAGTCTGGGTAGGAAATAGTAAACACGGTAACAAAGAGGGAAAGAGAGGATGGGTAGGAAATAGTAAACATGGTAACAAAGGGAGATTTGAAATAGTAATACGATAGTTAATTGTAGGTTATAATAGTCGAAAACACCAACTATCATAATTGAAGTCCTTGCCCACTCCACCCACTTGAAGTTGGGCCCAAGCAACCCCTTAATGTCCCTCTAAAGTTAACCAATGTTCCACCCAGGATTCTGCCTGCTAATTGATTTCCTTCCTCTGGTAAACTTACAACTTTCCATTTTCATAAATACTAATTACTAATCTAGTATCACCCTTAGCTGGCTAGATTGTGTTGAATTGCCAAAACCATTTTGTTAAAATACCTCATTACTTCTCTTCTAATGCCTAATCTTTCACTGTATTATGGTTGTGAGATGGTATTCCAATTAACTAGGTGTCGTGATACTCTCCTTGTTGCCTACTACCCAAATGAGCCAAATCAAAATCTTGAGTTTTCTTTTCATTATTCCGGCCAGTTTCCCTTTTTATTATCTCTATCTACTTCTTTCATATGAGCCTTCCCATGTTCACACTTCTAATGAAACTTGGAAATTTCTGATTTAGCATGTAACATGCTCTTCCGACATGGTAGCCTTATTTCGTCCCTTATTATTCACCAATTTCTTAGGTAGTTGCACGCAGTCTTCTTTGTTTAAAGATATCTTATTCATCTTCTTTAATGCTTTCATAAATACTGCTTCGTCCTAACGGCCTGTTTTACTCCCTTCAGAAATACATGCCAGATTTGGCTGGACTTTTTTCACATGTGCTTGTTGATGTCAGTAGTGTTAAGGCGCTATGCTTTCGCTGGTACCCAAGAGGTAAAGATCTTGAGGCTTCTTTTGGCTTTTGAGAAAAATGACGGGCATGTTATTCTGAATTTTCTGTTTCTTATTAAAAGTAAGAAAGTTAGACATGTATTACTTTCTAGCAATTGTTCGTCTGTAATTGCAAACCTAGACCAGTATTCTTGCAAATATTGGAAACCTTTTTATGCCATGCCAGAAAGAAAATATGAAATGAAAGTGTTATCAAACATGTGCGCTTAATTTCCAAACTTTTCAAGTACATGTAACATTGATTAATTTCCAAACTTTTCTTGTAGTTTGGTTACCTAATATATCTCAATATATTTGAGTTCTTCTATCAATATCTCGTGCCTATGATATGTTAAGAAATTTTTATGTTTAGCCTTTTTGTTGAGTTTTTGTCAGTATGAACGTTTTCCTTTATAAACCAAACATAGACTCGCCCTTAGAACATTTGGTTATTCAATTACTTGTCCACACAGTAACAACCCATTTCCTTTCCAGATCAAAAGAAAGCCCCACCGAAAGAGAATAAACATAGGGCTATGGATGATATCAGAGAAAGCATAATGGAACTCAAATATTACAAGGAAAATATATTTAAGAATTCTAAAAAGTGATGCAAGAGGAGGTACCACAACCACCTGATTGTATGTCTGAACGGTACGGAGATCTTACTTTAAATTTCAAGTCTATCATTCATCTCCTAATTCAATTGTGTATAATGTACTATCTTCCGTTATTATGGATATTATGCTGTTAAGTGGTGCTTATAGACTTGTATATCTTACTCCTTTGTAAATTTGGGCTCTTTAAGGTGTATGCTATTGCTTATCTAAGTGATGAAAATTTTTCTCTTATTGCATGCCTGAGGATTTATTTATTTATTTTTTTATCGAAATTAATTTATTTTTAGTGCAGTTGCTGAATACATTTCTCGGAGCCTATATAGTAACGAGAGGATTTTATGCCATATGATATCTCAGATGAATTTGTGCTGAGTAACTGCTTTCAAATTGAAAGATGCATGCGATTAGAGTATTTGTAGGAGATCCTATATTACAATTTATTTTCTTTACGATCTGTGAATTTGCTAGCTTATATTTGAAACGGTAATTTAGTTTGGTAAATCATATTTGAAAGTTCCTCCTACTCCTAACTAGAGAGAGCTTTGGCCAGCTTCAAGAAATTAGCAGACAGATGGCCATAGCCAATCCATGGAAGCATTACAGCTCAGCTAGTCTCCCTTTGTTTTGTAGTCGGTTAGTTTGCACGTGTGGTACATCCTATTGTCTTTGTAGTTGGAATTTATCTGGTTGGAGGTTTGGTTTATTTTCTCTCCTTTCAGTACTTCATTATTTTCTACTCCCATCTTTTTGGTCCATTCAATTTCAGCCACAAAGGCCTATTTCCCTCTTTCCCAAAAGTTTGAAAAACTAAATATGGTGGGAGGGATCTTTTTAGAAGGGGTGAATTTCTAGTGCTGGGATCTACATTAATGTTTGTGGATTTCACCCTATTTTTTTGAAAAATACGACAAGTGACAAAGGGTGGTAGTATGAAAAAGTTTTCATACACTCTTCAGGTGATAGTAGTATTGAAAATTTTTCAATAAAAGATAGAAATTAAGGGGAGAGATGAATAAGGGGGGAACTTTTTTTTTTTTTTTGTCCAAATGAGCTATTTACTAAAACTTGAAACTAAAGCTCATAGATCAAACAAACACTTAAAATTAAGGGGCTAAAGTGAATAACTTGATTTCATTGGAGACTCAAACTCACGAGCAAACACGTGGAACATGTAGTTTCTTCTCACTTGTAATTATTGTATGCAACTTATGTATTGTACAAGTGAAATAACATTCTTGCAATGCATGTGCATTTTTTTTTAATAATATATTTTCACATGCAATGCATGTATTTTAATACTAGTATAATATACTAAAAAGCCTAATGAAAATTGTATTAACTTATAAAAGGGTTGTTTTGGTCAATTAGATTTTAATCATCATGGGTTGGCCTAGTGGTAAAAAAGGAGACAAAGTCTCAATAAATGAGTAAGAGGTAATGGGTTCAATCTATAGTTAAATTACATTTAATACGTAAATTTACAAGATTATGTAGGATAATCTGAATCATAGCCATGGATGCCCAGACACACCCACAACCATTTTAATGCTTCCAAGGATTGTCTATGGCCATCTCTCTCATTCCTGGGAGTTGGCCAAAGCTCTCTCTAAGAGTAGGAAGAACTTTCACATCTACTTCTGTTTAACCCTTGTCAATCTTGACTCCATTAAACCAAAGCTAATTCCTTCTTCTTTTCTTCTTCTTCTTCCATCCAATTTGTAGGATTTCATCTCCCTTCTTCCCCTGCACTTTCACACAACCAACACCCTCCCCCTCACCTTAAGCACACTCTCCACCAAGCCTTCCCAGCGACTGCCCCATGCTTTGAGGCAATTTTGCAAACACTTTCTCTGCATCTCCTCATTTATGACTCTCTCCACCTAGCTTGGGCTCCTCAAATAGCTTCTTCCCGCAACATTATCGGAGTCTCCATCATTTCTCATGTTGTTCATAGAGTCCACTACCCTGATTCCAAATTCCCACCCTTGGATTTTGTTCTTCACAATTATTGGGAAGCCAAGTACAACACTGTCGATGGACCAATTTTAGAAGAAAAAACCTCCTGCCTAGGTAGAGAAGCCTTTCTGTATTGCTTGAATGCTTCTGTTTATCGCGATGTAATTCTGATGAATAGCTTCAGAGGGGGAGGGGGTCATGCATGGATTATCTCTCTCTTCTCTTGAAGAAGAAAGTAATCCCGATTGGTCCTTTGGTGTACGAATCGAGTGAGGATGAAGATGAAGATTATTTGAGGATAAAAAATTGGCTGGACAAAAGAGAAGTATCGTTGACGATTTTGGTGGCATTTGGAAGCGAATTATTCCCGTCAAAGGAAGAAATGGAAGAGAAAGGGAATGCGTTAAAGGAGAGGGGCTAATTTCATATGGGTGGTTATGTTTAAGGAGAAGAGAGGAGGGGGATTGAGGAGGTGTTGCCGAAGGGGTTTGTGGAGAGGGATGGAGAAAGGGCGATGGTAGTGAAAGAATGGCCTCCACAGGGGAAAATACTAAAACATGGAAGTATTGGGAGATTTGTGAATCACTGTGGATGGAACTTTGTGTTGGAGAGCATCGCGTCTGGGGTATCCATAATATGGGTTCCAATGTTTGGGGACCAACCCTTTAATGTTGGAGTGGTGGAAGAAGCAAGTGTGGGGGTGGAGGCCAAGCGAGATCCAGATGGCAAAATTCAAGGACAAGAAATTGCAAGGTTGATCAAACAAGTAGTGATTAAAAAAACCATATAA

mRNA sequence

ATGGCGATGGAGCCACTTGTAAACGCATTCTCAGTGTTGGAGCTCGACGTTGAAGATGATTATGTTTGCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTCCCCTTCAAGAATAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATGTTCTGGCGGGAGAAAGACACAAGCAAGGTCAACCAGATATAGCTGCAGAAAATTACAAATTTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTTTAAATGTTGAAACAGATAGAATACTGGAGATAGCTTGTATAATTACCAATGGCAGTCTGACCAAATTGGTTGAGGGTCCTGATTTAGTGATTAACCAATCAAAAGAATGTCTAGAGAAAATGGGAGAATGGTGTCAAAGTCATCATGCTGCCAGTGGATTGACAAAAAAAGTGCTGCAAAGTTCAATTAGTGAACGAGAAGCTGAAAAACAGAAATACATGCCAGATTTGGCTGGACTTTTTTCACATGTGCTTGTTGATGTCAGTAGTGTTAAGGCGCTATGCTTTCGCTGGTACCCAAGAGGAGAAGAGAGGAGGGGGATTGAGGAGGTGTTGCCGAAGGGGTTTGTGGAGAGGGATGGAGAAAGGGCGATGGTAGTGAAAGAATGGCCTCCACAGGGGAAAATACTAAAACATGGAAGTATTGGGAGATTTGTGAATCACTGTGGATGGAACTTTGTGTTGGAGAGCATCGCGTCTGGGGTATCCATAATATGGGTTCCAATGTTTGGGGACCAACCCTTTAATGTTGGAGTGGTGGAAGAAGCAAGTGTGGGGGTGGAGGCCAAGCGAGATCCAGATGGCAAAATTCAAGGACAAGAAATTGCAAGGTTGATCAAACAAGTAGTGATTAAAAAAACCATATAA

Coding sequence (CDS)

ATGGCGATGGAGCCACTTGTAAACGCATTCTCAGTGTTGGAGCTCGACGTTGAAGATGATTATGTTTGCTCTCTTTCTACTTCCTCCAAAGATGACGCTACTGCTTCTTCCCCTTCAAGAATAGGAAAAAGCAAGAAGGAAGTTAATATCTCTGGTGATGTTCTGGCGGGAGAAAGACACAAGCAAGGTCAACCAGATATAGCTGCAGAAAATTACAAATTTCCTCTTGTTTGGATTGACCTGGAAATGACTGGTTTAAATGTTGAAACAGATAGAATACTGGAGATAGCTTGTATAATTACCAATGGCAGTCTGACCAAATTGGTTGAGGGTCCTGATTTAGTGATTAACCAATCAAAAGAATGTCTAGAGAAAATGGGAGAATGGTGTCAAAGTCATCATGCTGCCAGTGGATTGACAAAAAAAGTGCTGCAAAGTTCAATTAGTGAACGAGAAGCTGAAAAACAGAAATACATGCCAGATTTGGCTGGACTTTTTTCACATGTGCTTGTTGATGTCAGTAGTGTTAAGGCGCTATGCTTTCGCTGGTACCCAAGAGGAGAAGAGAGGAGGGGGATTGAGGAGGTGTTGCCGAAGGGGTTTGTGGAGAGGGATGGAGAAAGGGCGATGGTAGTGAAAGAATGGCCTCCACAGGGGAAAATACTAAAACATGGAAGTATTGGGAGATTTGTGAATCACTGTGGATGGAACTTTGTGTTGGAGAGCATCGCGTCTGGGGTATCCATAATATGGGTTCCAATGTTTGGGGACCAACCCTTTAATGTTGGAGTGGTGGAAGAAGCAAGTGTGGGGGTGGAGGCCAAGCGAGATCCAGATGGCAAAATTCAAGGACAAGAAATTGCAAGGTTGATCAAACAAGTAGTGATTAAAAAAACCATATAA

Protein sequence

MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQKYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEERRGIEEVLPKGFVERDGERAMVVKEWPPQGKILKHGSIGRFVNHCGWNFVLESIASGVSIIWVPMFGDQPFNVGVVEEASVGVEAKRDPDGKIQGQEIARLIKQVVIKKTI
Homology
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BLAST of HG10001058 vs. NCBI nr
Match: XP_038902868.1 (oligoribonuclease isoform X1 [Benincasa hispida] >XP_038902870.1 oligoribonuclease isoform X1 [Benincasa hispida])

HSP 1 Score: 332.8 bits (852), Expect = 3.1e-87
Identity = 171/219 (78.08%), Postives = 183/219 (83.56%), Query Frame = 0 

Query: 1   MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERH 60
           MAM+PLVNAFSVLELD EDD + +LSTSSKDDATASSPSR GKSKKEVNISGD+L GE+ 
Sbjct: 1   MAMKPLVNAFSVLELDAEDDQIPALSTSSKDDATASSPSRTGKSKKEVNISGDILTGEKQ 60

Query: 61  KQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSK 120
           KQGQPD+AAENYKFPLVWIDLEMTGL+VETDRILEIACIITNGSLTKLVEGPDLVI+QSK
Sbjct: 61  KQGQPDVAAENYKFPLVWIDLEMTGLHVETDRILEIACIITNGSLTKLVEGPDLVIHQSK 120

Query: 121 ECLEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ------------------------ 180
           ECLEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                        
Sbjct: 121 ECLEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIEFVKKHVGSYKLHLAGNSVYMD 180

Query: 181 -----KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
                KYMPDLAGLFSHVLVDVSSVKALCFRWYPR +++
Sbjct: 181 FIFLKKYMPDLAGLFSHVLVDVSSVKALCFRWYPRDQKK 219

[Close]
BLAST of HG10001058 vs. NCBI nr
Match: XP_022996309.1 (oligoribonuclease [Cucurbita maxima])

HSP 1 Score: 314.7 bits (805), Expect = 8.6e-82
Identity = 163/217 (75.12%), Postives = 173/217 (79.72%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           MEP VNAFSVLELD EDD VC  ST SKD+  ASS SR GKSKKEVNISGD+L GER KQ
Sbjct: 1   MEPFVNAFSVLELDAEDDQVCPPSTFSKDEGAASSSSRTGKSKKEVNISGDILMGERQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
            QPD+AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGP LVI+QSKEC
Sbjct: 61  SQPDVAAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPHLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIDFVKKHVGSYTLHLAGNSVYVDFT 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALCFRW+PR +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCFRWFPRDQKK 217

[Close]
BLAST of HG10001058 vs. NCBI nr
Match: XP_004142177.1 (oligoribonuclease [Cucumis sativus] >KGN54054.1 hypothetical protein Csa_017987 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 3.6e-80
Identity = 159/219 (72.60%), Postives = 174/219 (79.45%), Query Frame = 0 

Query: 1   MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERH 60
           MAM+PLVNAFS+LELD EDD + +LSTSSKDDAT S PS  GK KKEVNISGD+L GER 
Sbjct: 1   MAMKPLVNAFSLLELDAEDDQIPALSTSSKDDATVSYPSPTGKRKKEVNISGDILTGERQ 60

Query: 61  KQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSK 120
           KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACIITNG+LTKLVEGPDLVI+QSK
Sbjct: 61  KQGQPNAVAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGNLTKLVEGPDLVIHQSK 120

Query: 121 ECLEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ------------------------ 180
           ECL+KMGEWCQSHHAASGLTKKVL+S+ISEREAEKQ                        
Sbjct: 121 ECLDKMGEWCQSHHAASGLTKKVLRSTISEREAEKQVIQFVKKHVCTDKLHLAGNSVYMD 180

Query: 181 -----KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
                KYMPDLAGLFSHVLVDVSS+K LC RWYPR  ++
Sbjct: 181 FIFLKKYMPDLAGLFSHVLVDVSSIKTLCDRWYPRDRKK 219

[Close]
BLAST of HG10001058 vs. NCBI nr
Match: XP_022957669.1 (oligoribonuclease [Cucurbita moschata] >KAG6605859.1 Oligoribonuclease, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035809.1 Oligoribonuclease [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 308.9 bits (790), Expect = 4.7e-80
Identity = 162/217 (74.65%), Postives = 172/217 (79.26%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           MEP VNAFSVLELD EDD V   ST SKD+A ASS SR GKSKKEVNISGD+L G+R KQ
Sbjct: 1   MEPFVNAFSVLELDAEDDQVRPPSTFSKDEAAASSSSRTGKSKKEVNISGDILMGDRQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
            QPD AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGP LVI+QSKEC
Sbjct: 61  SQPDAAAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPHLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIEFVKKHVGSYTLHLAGNSVYVDFI 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALCFRW+PR +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCFRWFPRDQKK 217

[Close]
BLAST of HG10001058 vs. NCBI nr
Match: XP_023533182.1 (oligoribonuclease [Cucurbita pepo subsp. pepo] >XP_023533183.1 oligoribonuclease [Cucurbita pepo subsp. pepo] >XP_023533185.1 oligoribonuclease [Cucurbita pepo subsp. pepo])

HSP 1 Score: 305.1 bits (780), Expect = 6.8e-79
Identity = 162/217 (74.65%), Postives = 172/217 (79.26%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           MEP VNAFSVLELD EDD V   ST SKD+A ASS SR GKSKKE NISGD+L GER KQ
Sbjct: 1   MEPFVNAFSVLELDAEDDQVRPPSTFSKDEAAASSSSRTGKSKKE-NISGDILMGERQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
            QPD+AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGP LVI+QSKEC
Sbjct: 61  SQPDVAAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPHLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIEFVKKHVGSYTLHLAGNSVYVDFI 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALCFRW+PR +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCFRWFPRDQKK 216

[Close]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match: Q9ZVE0 (Oligoribonuclease OS=Arabidopsis thaliana OX=3702 GN=At2g26970 PE=2 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-45
Identity = 107/212 (50.47%), Postives = 128/212 (60.38%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           M  L NAFSVL               + +DA  +S S  GK ++ VN  G +  G+    
Sbjct: 1   MNKLSNAFSVLAF-------------ADEDAPMASSSSTGKQEESVN--GSLEDGD---- 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
                    YK PLVWIDLEMTGLNVE DRILEIACIITNG LT+ VEGPDLV+ Q+K+C
Sbjct: 61  ---------YKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEK--------------------------- 182
           L+KM +WCQ+HH ASGLTKKVL S+I+EREAE+                           
Sbjct: 121 LDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFL 180

Query: 183 --QKYMPDLAGLFSHVLVDVSSVKALCFRWYP 186
             +KYMP+LA LF H+LVDVSSVKALC RW+P
Sbjct: 181 FLKKYMPELAALFPHILVDVSSVKALCARWFP 184

[Close]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match: Q9Y3B8 (Oligoribonuclease, mitochondrial OS=Homo sapiens OX=9606 GN=REXO2 PE=1 SV=3)

HSP 1 Score: 119.8 bits (299), Expect = 5.3e-26
Identity = 60/151 (39.74%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 68  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMG 127
           A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M 
Sbjct: 35  AGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMS 94

Query: 128 EWCQSHHAASGLTKKVLQSSISEREAEKQ-----------------------------KY 187
           +WC+ HH  SGLTK V +S+I+ ++AE +                             KY
Sbjct: 95  DWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQTPPGLCPLAGNSVHEDKKFLDKY 154

Query: 188 MPDLAGLFSHVLVDVSSVKALCFRWYPRGEE 190
           MP       + ++DVS+VK LC RWYP   E
Sbjct: 155 MPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185

[Close]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match: A2VE52 (Oligoribonuclease, mitochondrial OS=Bos taurus OX=9913 GN=REXO2 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.2e-25
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 68  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMG 127
           A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M 
Sbjct: 35  AGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMS 94

Query: 128 EWCQSHHAASGLTKKVLQSSISEREAEKQ-----------------------------KY 187
           +WC+ HH  SGLTK V +S+++ ++AE +                             KY
Sbjct: 95  DWCKEHHGKSGLTKAVKESTMTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKY 154

Query: 188 MPDLAGLFSHVLVDVSSVKALCFRWYPRGEE 190
           MP       + ++DVS+VK LC RWYP   E
Sbjct: 155 MPQFMKHLHYRIIDVSTVKELCRRWYPEEYE 185

[Close]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match: Q9D8S4 (Oligoribonuclease, mitochondrial OS=Mus musculus OX=10090 GN=Rexo2 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 58/151 (38.41%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 68  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMG 127
           A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M 
Sbjct: 35  AGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMS 94

Query: 128 EWCQSHHAASGLTKKVLQSSISEREAEKQ-----------------------------KY 187
           +WC+ HH  SGLTK V +S+++ ++AE +                             K+
Sbjct: 95  DWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKH 154

Query: 188 MPDLAGLFSHVLVDVSSVKALCFRWYPRGEE 190
           MP       + ++DVS+VK LC RWYP   E
Sbjct: 155 MPQFMKHLHYRIIDVSTVKELCRRWYPEDYE 185

[Close]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match: Q5U1X1 (Oligoribonuclease, mitochondrial OS=Rattus norvegicus OX=10116 GN=Rexo2 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.0e-25
Identity = 58/151 (38.41%), Postives = 85/151 (56.29%), Query Frame = 0 

Query: 68  AAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKECLEKMG 127
           A E+    +VW+DLEMTGL++E D+I+E+AC+IT+  L  L EGP+L+I Q  E L+ M 
Sbjct: 35  AGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMS 94

Query: 128 EWCQSHHAASGLTKKVLQSSISEREAEKQ-----------------------------KY 187
           +WC+ HH  SGLTK V +S+++ ++AE +                             K+
Sbjct: 95  DWCKEHHGKSGLTKAVKESTVTLQQAEYEFLSFVRQQTPPGLCPLAGNSVHADKKFLDKH 154

Query: 188 MPDLAGLFSHVLVDVSSVKALCFRWYPRGEE 190
           MP       + ++DVS+VK LC RWYP   E
Sbjct: 155 MPQFMKHLHYRIIDVSTVKELCRRWYPEDYE 185

[Close]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match: A0A6J1K8C8 (oligoribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491575 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 4.2e-82
Identity = 163/217 (75.12%), Postives = 173/217 (79.72%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           MEP VNAFSVLELD EDD VC  ST SKD+  ASS SR GKSKKEVNISGD+L GER KQ
Sbjct: 1   MEPFVNAFSVLELDAEDDQVCPPSTFSKDEGAASSSSRTGKSKKEVNISGDILMGERQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
            QPD+AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGP LVI+QSKEC
Sbjct: 61  SQPDVAAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPHLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIDFVKKHVGSYTLHLAGNSVYVDFT 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALCFRW+PR +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCFRWFPRDQKK 217

[Close]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match: A0A0A0KZ28 (Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G279830 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.8e-80
Identity = 159/219 (72.60%), Postives = 174/219 (79.45%), Query Frame = 0 

Query: 1   MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERH 60
           MAM+PLVNAFS+LELD EDD + +LSTSSKDDAT S PS  GK KKEVNISGD+L GER 
Sbjct: 1   MAMKPLVNAFSLLELDAEDDQIPALSTSSKDDATVSYPSPTGKRKKEVNISGDILTGERQ 60

Query: 61  KQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSK 120
           KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACIITNG+LTKLVEGPDLVI+QSK
Sbjct: 61  KQGQPNAVAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGNLTKLVEGPDLVIHQSK 120

Query: 121 ECLEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ------------------------ 180
           ECL+KMGEWCQSHHAASGLTKKVL+S+ISEREAEKQ                        
Sbjct: 121 ECLDKMGEWCQSHHAASGLTKKVLRSTISEREAEKQVIQFVKKHVCTDKLHLAGNSVYMD 180

Query: 181 -----KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
                KYMPDLAGLFSHVLVDVSS+K LC RWYPR  ++
Sbjct: 181 FIFLKKYMPDLAGLFSHVLVDVSSIKTLCDRWYPRDRKK 219

[Close]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match: A0A6J1H2M6 (oligoribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459134 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.3e-80
Identity = 162/217 (74.65%), Postives = 172/217 (79.26%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           MEP VNAFSVLELD EDD V   ST SKD+A ASS SR GKSKKEVNISGD+L G+R KQ
Sbjct: 1   MEPFVNAFSVLELDAEDDQVRPPSTFSKDEAAASSSSRTGKSKKEVNISGDILMGDRQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
            QPD AAE+YKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGP LVI+QSKEC
Sbjct: 61  SQPDAAAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPHLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQSHHAASGLTKKVLQS+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQSHHAASGLTKKVLQSTISEREAEKQVIEFVKKHVGSYTLHLAGNSVYVDFI 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALCFRW+PR +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCFRWFPRDQKK 217

[Close]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match: A0A1S3BNX4 (oligoribonuclease OS=Cucumis melo OX=3656 GN=LOC103491603 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 7.4e-79
Identity = 159/219 (72.60%), Postives = 171/219 (78.08%), Query Frame = 0 

Query: 1   MAMEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERH 60
           MA +PLVNAFSVLELD EDD + +LSTSSKDDAT S  S  GKSKKEVNISGD+  GER 
Sbjct: 1   MATKPLVNAFSVLELDAEDDQIPALSTSSKDDATVSYSSSTGKSKKEVNISGDIPTGERQ 60

Query: 61  KQGQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSK 120
           KQGQP+  AE+YKFPLVWIDLEMTGLNVETDRILEIACIITNG+LTKLVEGPDLVI+QSK
Sbjct: 61  KQGQPNAVAEDYKFPLVWIDLEMTGLNVETDRILEIACIITNGNLTKLVEGPDLVIHQSK 120

Query: 121 ECLEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ------------------------ 180
           ECLEKMGEWCQSHHAASGLTKKV +S+ISEREAEKQ                        
Sbjct: 121 ECLEKMGEWCQSHHAASGLTKKVQRSTISEREAEKQVIEFVKKHVCCDKLHLAGNSVYMD 180

Query: 181 -----KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
                KYMPDLAGLFSHVLVDVSSVK LC RWYPR  ++
Sbjct: 181 FIFLKKYMPDLAGLFSHVLVDVSSVKTLCDRWYPRDRKK 219

[Close]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match: A0A6J1DKA2 (oligoribonuclease isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021263 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.7e-75
Identity = 152/217 (70.05%), Postives = 170/217 (78.34%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           M+ LVNAFSVLELD EDD + +LST SK DATASS S+ GKSKKEV+ISGD+  GER KQ
Sbjct: 1   MQSLVNAFSVLELDAEDDQIPALSTFSKPDATASSSSKTGKSKKEVDISGDIPTGERQKQ 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
              D+AAE+YK PLVWIDLEMTGLNVETDRILEIACI+TNG+LTKL EGPDLVI+QSKEC
Sbjct: 61  SLLDVAAEDYKLPLVWIDLEMTGLNVETDRILEIACIVTNGNLTKLAEGPDLVIHQSKEC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEKQ-------------------------- 182
           LEKMGEWCQ+HHAASGLTKKVL+S+ISEREAEKQ                          
Sbjct: 121 LEKMGEWCQTHHAASGLTKKVLRSTISEREAEKQVIEFVKKYVGSYTPLLAGNSVYTDFI 180

Query: 183 ---KYMPDLAGLFSHVLVDVSSVKALCFRWYPRGEER 191
              KYMPDLAGLFSHVLVDVSSVKALC RWYP+ +++
Sbjct: 181 FLKKYMPDLAGLFSHVLVDVSSVKALCCRWYPKDQKK 217

[Close]
BLAST of HG10001058 vs. TAIR 10
Match: AT2G26970.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 7.4e-47
Identity = 107/212 (50.47%), Postives = 128/212 (60.38%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           M  L NAFSVL               + +DA  +S S  GK ++ VN  G +  G+    
Sbjct: 1   MNKLSNAFSVLAF-------------ADEDAPMASSSSTGKQEESVN--GSLEDGD---- 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
                    YK PLVWIDLEMTGLNVE DRILEIACIITNG LT+ VEGPDLV+ Q+K+C
Sbjct: 61  ---------YKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEK--------------------------- 182
           L+KM +WCQ+HH ASGLTKKVL S+I+EREAE+                           
Sbjct: 121 LDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFL 180

Query: 183 --QKYMPDLAGLFSHVLVDVSSVKALCFRWYP 186
             +KYMP+LA LF H+LVDVSSVKALC RW+P
Sbjct: 181 FLKKYMPELAALFPHILVDVSSVKALCARWFP 184

[Close]
BLAST of HG10001058 vs. TAIR 10
Match: AT2G26970.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 4.0e-45
Identity = 103/212 (48.58%), Postives = 125/212 (58.96%), Query Frame = 0 

Query: 3   MEPLVNAFSVLELDVEDDYVCSLSTSSKDDATASSPSRIGKSKKEVNISGDVLAGERHKQ 62
           M  L NAFSVL    ED  + S S++                    +++G +  G+    
Sbjct: 1   MNKLSNAFSVLAFADEDAPMASSSSTE-------------------SVNGSLEDGD---- 60

Query: 63  GQPDIAAENYKFPLVWIDLEMTGLNVETDRILEIACIITNGSLTKLVEGPDLVINQSKEC 122
                    YK PLVWIDLEMTGLNVE DRILEIACIITNG LT+ VEGPDLV+ Q+K+C
Sbjct: 61  ---------YKQPLVWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDC 120

Query: 123 LEKMGEWCQSHHAASGLTKKVLQSSISEREAEK--------------------------- 182
           L+KM +WCQ+HH ASGLTKKVL S+I+EREAE+                           
Sbjct: 121 LDKMDDWCQTHHGASGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFL 180

Query: 183 --QKYMPDLAGLFSHVLVDVSSVKALCFRWYP 186
             +KYMP+LA LF H+LVDVSSVKALC RW+P
Sbjct: 181 FLKKYMPELAALFPHILVDVSSVKALCARWFP 180

[Close]
BLAST of HG10001058 vs. TAIR 10
Match: AT3G50740.1 (UDP-glucosyl transferase 72E1 )

HSP 1 Score: 95.9 bits (237), Expect = 5.9e-20
Identity = 46/114 (40.35%), Postives = 72/114 (63.16%), Query Frame = 0 

Query: 187 GEERRGIEEVLPKGFVERDGERAMVVKEWPPQGKILKHGSIGRFVNHCGWNFVLESIASG 246
           G+ R G  + LP+GFV R  ER  +V  W PQ +IL H ++G F+ HCGWN +LES+  G
Sbjct: 322 GKIRDGTPDYLPEGFVSRTHERGFMVSSWAPQAEILAHQAVGGFLTHCGWNSILESVVGG 381

Query: 247 VSIIWVPMFGDQPFNVGVV-EEASVGVEAKRDP-DGKIQGQEIARLIKQVVIKK 299
           V +I  P+F +Q  N  ++ EE  V V +K+ P +G I   EI  L++++++++
Sbjct: 382 VPMIAWPLFAEQMMNATLLNEELGVAVRSKKLPSEGVITRAEIEALVRKIMVEE 435

[Close]
BLAST of HG10001058 vs. TAIR 10
Match: AT1G05675.1 (UDP-Glycosyltransferase superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-19
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = 0 

Query: 181 FRWYPRGEERRGIEEVLPKGFVERDGERAMVVKEWPPQGKILKHGSIGRFVNHCGWNFVL 240
           F W  R  ERR     LP+ ++E  GE+ + V  W PQ ++L H SIG FV HCGWN  L
Sbjct: 302 FLWVVRETERR----KLPENYIEEIGEKGLTV-SWSPQLEVLTHKSIGCFVTHCGWNSTL 361

Query: 241 ESIASGVSIIWVPMFGDQPFNVGVVEEA-SVGVEAKRDPDGKIQGQEIARLIKQVV 296
           E ++ GV +I +P + DQP N   +E+   VGV  K D DG ++ +E  R +++V+
Sbjct: 362 EGLSLGVPMIGMPHWADQPTNAKFMEDVWKVGVRVKADSDGFVRREEFVRRVEEVM 412

[Close]
BLAST of HG10001058 vs. TAIR 10
Match: AT1G01420.1 (UDP-glucosyl transferase 72B3 )

HSP 1 Score: 92.8 bits (229), Expect = 5.0e-19
Identity = 40/99 (40.40%), Postives = 64/99 (64.65%), Query Frame = 0 

Query: 197 LPKGFVERDGERAMVVKEWPPQGKILKHGSIGRFVNHCGWNFVLESIASGVSIIWVPMFG 256
           LP+GF++R  E+ +VV  W PQ +IL H SIG F+ HCGWN  LESI +GV +I  P++ 
Sbjct: 328 LPQGFLDRTKEKGLVVGSWAPQAQILTHTSIGGFLTHCGWNSSLESIVNGVPLIAWPLYA 387

Query: 257 DQPFNVGVVEEASVGVEAKRDPDGKIQGQEIARLIKQVV 296
           +Q  N  ++ +    + A+   DG +  +E+AR++K ++
Sbjct: 388 EQKMNALLLVDVGAALRARLGEDGVVGREEVARVVKGLI 426

The following BLAST results are available for this feature:
BLAST of HG10001058 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902868.13.1e-8778.08oligoribonuclease isoform X1 [Benincasa hispida] >XP_038902870.1 oligoribonuclea... [more]
XP_022996309.18.6e-8275.12oligoribonuclease [Cucurbita maxima][more]
XP_004142177.13.6e-8072.60oligoribonuclease [Cucumis sativus] >KGN54054.1 hypothetical protein Csa_017987 ... [more]
XP_022957669.14.7e-8074.65oligoribonuclease [Cucurbita moschata] >KAG6605859.1 Oligoribonuclease, partial ... [more]
XP_023533182.16.8e-7974.65oligoribonuclease [Cucurbita pepo subsp. pepo] >XP_023533183.1 oligoribonuclease... [more]
BLAST of HG10001058 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9ZVE01.0e-4550.47Oligoribonuclease OS=Arabidopsis thaliana OX=3702 GN=At2g26970 PE=2 SV=2[more]
Q9Y3B85.3e-2639.74Oligoribonuclease, mitochondrial OS=Homo sapiens OX=9606 GN=REXO2 PE=1 SV=3[more]
A2VE521.2e-2539.07Oligoribonuclease, mitochondrial OS=Bos taurus OX=9913 GN=REXO2 PE=2 SV=1[more]
Q9D8S42.0e-2538.41Oligoribonuclease, mitochondrial OS=Mus musculus OX=10090 GN=Rexo2 PE=1 SV=2[more]
Q5U1X12.0e-2538.41Oligoribonuclease, mitochondrial OS=Rattus norvegicus OX=10116 GN=Rexo2 PE=2 SV=... [more]
BLAST of HG10001058 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1K8C84.2e-8275.12oligoribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111491575 PE=3 SV=1[more]
A0A0A0KZ281.8e-8072.60Exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G279830... [more]
A0A6J1H2M62.3e-8074.65oligoribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111459134 PE=3 SV=1[more]
A0A1S3BNX47.4e-7972.60oligoribonuclease OS=Cucumis melo OX=3656 GN=LOC103491603 PE=3 SV=1[more]
A0A6J1DKA21.7e-7570.05oligoribonuclease isoform X1 OS=Momordica charantia OX=3673 GN=LOC111021263 PE=3... [more]
BLAST of HG10001058 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G26970.17.4e-4750.47Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT2G26970.24.0e-4548.58Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
AT3G50740.15.9e-2040.35UDP-glucosyl transferase 72E1 [more]
AT1G05675.12.2e-1941.38UDP-Glycosyltransferase superfamily protein [more]
AT1G01420.15.0e-1940.40UDP-glucosyl transferase 72B3 [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 68..157
e-value: 1.8E-31
score: 111.3
NoneNo IPR availableGENE3D3.40.50.2000Glycogen Phosphorylase B;coord: 193..295
e-value: 3.9E-35
score: 123.8
NoneNo IPR availablePANTHERPTHR11046:SF18OLIGORIBONUCLEASE-LIKEcoord: 3..156
NoneNo IPR availablePANTHERPTHR11046:SF18OLIGORIBONUCLEASE-LIKEcoord: 156..190
NoneNo IPR availableSUPERFAMILY53756UDP-Glycosyltransferase/glycogen phosphorylasecoord: 183..296
IPR002213UDP-glucuronosyl/UDP-glucosyltransferasePFAMPF00201UDPGTcoord: 209..274
e-value: 9.9E-15
score: 54.3
IPR013520Exonuclease, RNase T/DNA polymerase IIIPFAMPF00929RNase_Tcoord: 77..156
e-value: 1.1E-13
score: 52.1
IPR022894OligoribonucleasePANTHERPTHR11046OLIGORIBONUCLEASE, MITOCHONDRIALcoord: 156..190
IPR022894OligoribonucleasePANTHERPTHR11046OLIGORIBONUCLEASE, MITOCHONDRIALcoord: 3..156
IPR022894OligoribonucleaseCDDcd06135Orncoord: 76..210
e-value: 1.65681E-56
score: 178.123
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 74..193

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001058.1HG10001058.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component GO:0005739 mitochondrion
molecular_function GO:0000175 3'-5'-exoribonuclease activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008194 UDP-glycosyltransferase activity