HG10001052 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001052
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	COP9 signalosome complex subunit 2
Location	Chr09: 13583426 .. 13584002 (-)
RNA-Seq Expression	HG10001052
Synteny	HG10001052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACTATGTTTTCGAGTACTCGGACGATGAACCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGTTCCTGGAATGTTGTCTTGAAGTTTTGCAATCGCATTCTTTCTTGTCCTATGTTGTTTTTCTATTTTTAATAGCATCATTTGATCCAATATATTCATTAATAGGGTTGGTTGAAACGGACCCCGAAGGAGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGGTAAGTGTGGTTGTGATTTCTTTGTTTCTGCTTCCTAGATTCTTGGACACAAATTCTATGCAGGCTCACTATCCAATAATCTTTCACTCATTCGTTTTGGATATCTGTGGTGACAGGCTGTGTTTTATAAGTTCTTAAAGTAGTGGGGTGATTGTGGTAGTTTAACTTTAATTTTTGAAACAAACTTGTAGTTTGCTTCTCAATGACCAGGTCATGCTTTCTGAAAATGGAAAGCATTGGATCAAAGGACACATGATTCTTATTGTTGATCTTGATCCTATATGGCTAGGGATTCTTCATGGTAGATAA

mRNA sequence

ATGGAGGACTATGTTTTCGAGTACTCGGACGATGAACCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTTGAAACGGACCCCGAAGGAGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGTTTGCTTCTCAATGACCAGGTCATGCTTTCTGAAAATGGAAAGCATTGGATCAAAGGACACATGATTCTTATTGTTGATCTTGATCCTATATGGCTAGGGATTCTTCATGGTAGATAA

Coding sequence (CDS)

ATGGAGGACTATGTTTTCGAGTACTCGGACGATGAACCTGAAGAGCAGGACGTTGATATTGAAAATCAATACTACAACTCTAAAGGGTTGGTTGAAACGGACCCCGAAGGAGCTCTTGCAGGGTTTGCTGAGGTGGTACGCATGGAACCCGAGAAGGCAGAGTGTTTGCTTCTCAATGACCAGGTCATGCTTTCTGAAAATGGAAAGCATTGGATCAAAGGACACATGATTCTTATTGTTGATCTTGATCCTATATGGCTAGGGATTCTTCATGGTAGATAA

Protein sequence

MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLLNDQVMLSENGKHWIKGHMILIVDLDPIWLGILHGR

Homology

[Close]

BLAST of HG10001052 vs. NCBI nr
Match: KAG6412554.1 (hypothetical protein SASPL_125234 [Salvia splendens])

HSP 1 Score: 107.8 bits (268), Expect = 5.0e-20
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECL 57
          MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGAL GFAEVVRMEPEKAECL
Sbjct: 7  MEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEGALEGFAEVVRMEPEKAECL 62

[Close]

BLAST of HG10001052 vs. NCBI nr
Match: GFS37825.1 (proteasome family protein [Actinidia rufa])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL 59
          MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE ++L
Sbjct: 9  MEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWVML 66

[Close]

BLAST of HG10001052 vs. NCBI nr
Match: XP_008449850.1 (PREDICTED: COP9 signalosome complex subunit 2 [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 7  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 60

[Close]

BLAST of HG10001052 vs. NCBI nr
Match: XP_038901340.1 (COP9 signalosome complex subunit 2 [Benincasa hispida])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 7  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 60

[Close]

BLAST of HG10001052 vs. NCBI nr
Match: XP_008786801.1 (COP9 signalosome complex subunit 2 isoform X1 [Phoenix dactylifera])

HSP 1 Score: 105.9 bits (263), Expect = 1.9e-19
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 7  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 60

[Close]

BLAST of HG10001052 vs. ExPASy Swiss-Prot
Match: Q8W207 (COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CSN2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.7e-18
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSD+E EEQDVDIENQYYNSKG+VET+PE AL+GFAEVV+MEPEKA+
Sbjct: 7  MEDYGFEYSDEEQEEQDVDIENQYYNSKGMVETEPEEALSGFAEVVQMEPEKAD 60

[Close]

BLAST of HG10001052 vs. ExPASy Swiss-Prot
Match: Q6IQT4 (COP9 signalosome complex subunit 2 OS=Danio rerio OX=7955 GN=cops2 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 2  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Sbjct: 14 EDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGE 66

[Close]

BLAST of HG10001052 vs. ExPASy Swiss-Prot
Match: P61201 (COP9 signalosome complex subunit 2 OS=Homo sapiens OX=9606 GN=COPS2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 2  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Sbjct: 14 EDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGE 66

[Close]

BLAST of HG10001052 vs. ExPASy Swiss-Prot
Match: P61202 (COP9 signalosome complex subunit 2 OS=Mus musculus OX=10090 GN=Cops2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 2  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Sbjct: 14 EDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGE 66

[Close]

BLAST of HG10001052 vs. ExPASy Swiss-Prot
Match: P61203 (COP9 signalosome complex subunit 2 OS=Rattus norvegicus OX=10116 GN=Cops2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-08
Identity = 30/53 (56.60%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 2  EDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          EDY  EYS+D   E +VD+ENQYYNSK L E DP+ AL+ F +V+ +E EK E
Sbjct: 14 EDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGE 66

[Close]

BLAST of HG10001052 vs. ExPASy TrEMBL
Match: A0A4D9C4Q3 (COP9 signalosome complex subunit 2 OS=Salvia splendens OX=180675 GN=COPS2 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 63/92 (68.48%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLLND 60
          MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGAL GFAEVVRMEPEKAEC     
Sbjct: 7  MEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEGALEGFAEVVRMEPEKAECFDKGF 66

Query: 61 QVMLSENGKHWIKGHMILIVDLDPIWLGILHG 93
          QV  SE       GH+I I  L   +L +  G
Sbjct: 67 QV--SE------YGHIIWIYSLTVGFLFMFRG 90

[Close]

BLAST of HG10001052 vs. ExPASy TrEMBL
Match: A0A7J0DLT2 (Proteasome family protein OS=Actinidia rufa OX=165716 GN=Acr_00g0054160 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 7.0e-20
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAECLLL 59
          MEDY FEYSD+EPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE ++L
Sbjct: 9  MEDYGFEYSDEEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAEWVML 66

[Close]

BLAST of HG10001052 vs. ExPASy TrEMBL
Match: A0A5A7TF99 (COP9 signalosome complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00560 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1   MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
           MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 76  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 129

[Close]

BLAST of HG10001052 vs. ExPASy TrEMBL
Match: A0A5D3DEF1 (COP9 signalosome complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00770 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1   MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
           MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 76  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 129

[Close]

BLAST of HG10001052 vs. ExPASy TrEMBL
Match: A0A0A0KZ23 (PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G274790 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 9.1e-20
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE
Sbjct: 7  MEDYGFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 60

[Close]

BLAST of HG10001052 vs. TAIR 10
Match: AT2G26990.1 (proteasome family protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.6e-19
Identity = 45/54 (83.33%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MEDYVFEYSDDEPEEQDVDIENQYYNSKGLVETDPEGALAGFAEVVRMEPEKAE 55
          MEDY FEYSD+E EEQDVDIENQYYNSKG+VET+PE AL+GFAEVV+MEPEKA+
Sbjct: 7  MEDYGFEYSDEEQEEQDVDIENQYYNSKGMVETEPEEALSGFAEVVQMEPEKAD 60

The following BLAST results are available for this feature:

BLAST of HG10001052 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6412554.1	5.0e-20	94.64	hypothetical protein SASPL_125234 [Salvia splendens]	[more]
GFS37825.1	1.4e-19	91.38	proteasome family protein [Actinidia rufa]	[more]
XP_008449850.1	1.9e-19	98.15	PREDICTED: COP9 signalosome complex subunit 2 [Cucumis melo]	[more]
XP_038901340.1	1.9e-19	98.15	COP9 signalosome complex subunit 2 [Benincasa hispida]	[more]
XP_008786801.1	1.9e-19	98.15	COP9 signalosome complex subunit 2 isoform X1 [Phoenix dactylifera]	[more]

BLAST of HG10001052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W207	3.7e-18	83.33	COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CSN2 PE=1 ...	[more]
Q6IQT4	1.2e-08	56.60	COP9 signalosome complex subunit 2 OS=Danio rerio OX=7955 GN=cops2 PE=2 SV=1	[more]
P61201	1.2e-08	56.60	COP9 signalosome complex subunit 2 OS=Homo sapiens OX=9606 GN=COPS2 PE=1 SV=1	[more]
P61202	1.2e-08	56.60	COP9 signalosome complex subunit 2 OS=Mus musculus OX=10090 GN=Cops2 PE=1 SV=1	[more]
P61203	1.2e-08	56.60	COP9 signalosome complex subunit 2 OS=Rattus norvegicus OX=10116 GN=Cops2 PE=1 S...	[more]

BLAST of HG10001052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D9C4Q3	1.4e-20	68.48	COP9 signalosome complex subunit 2 OS=Salvia splendens OX=180675 GN=COPS2 PE=4 S...	[more]
A0A7J0DLT2	7.0e-20	91.38	Proteasome family protein OS=Actinidia rufa OX=165716 GN=Acr_00g0054160 PE=4 SV=...	[more]
A0A5A7TF99	9.1e-20	98.15	COP9 signalosome complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3DEF1	9.1e-20	98.15	COP9 signalosome complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0KZ23	9.1e-20	98.15	PCI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G274790 PE=4 SV...	[more]

BLAST of HG10001052 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26990.1	2.6e-19	83.33	proteasome family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR10678	26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2	coord: 1..55
None	No IPR available	PANTHER	PTHR10678:SF12	SUBFAMILY NOT NAMED	coord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001052.1	HG10001052.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000502	proteasome complex