HG10001018 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10001018
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 13287881 .. 13288888 (-)
RNA-Seq ExpressionHG10001018
SyntenyHG10001018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGGTTTTTTGGTTGGTCATTCTGTAAGTTCTATGCTCCATGTGGATCGTAATCTTTCCTATATTTCTGCCACTTGGAAGAGTTTTTCATAGTTTCCTTGGCTTGGAGTTTGATTTTCCTTCCCCCTTTCTGAAATCTCGTGTGTTCTATGAAATGAAATCCTTTCTCCTTGAAGGAAAAAAGGGTGTTTCTCTTACACCTAGCTTGGGAGGTTGTGCTACCCCCTGCGTGCTCACCCACATATTTTGTTTTCAGCTTTATTCATTTCTTTTATTTTTGATACAGTAACCAACCAATTATAGCATCAATTTTTACTATTTTCTGTCTGCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATGTGAGTATCCTTATCTCAGATTATGAAACCTGTTAGTTTTTGTAGGCTTATAGAATTTTGTTCACTCTGCCTGACCAAAATTGATTATGTTTGGATTTGGATATTTCACTGGATGATAGGAGGTGGGTCAACTGTGAATGTATTGGCGTGCCTCAGCTGTTGATATTGAGATTACTTATATGATTTCAAATTATTATTTATTTATTATTTCTTTTTTTTTTTTTTTTTTTCTTTTACAAAAATGCGGACTATGCAATGGTTTTTTTTCTTTAACATTTATTATTTTCTCATTTTTTTCTCTTCGGGAGTTTGCATCCTTTGAGCATCAGTTTCTTTTTATTTATTAAATAAAAATGTTTCTTTTCTGGTTAAAATGAAATATTAGATGGTGGACATGGTAAATGTGAGAAACTGGAATGAGTTTTATTGATTCTCTTGTCTGCGATTTGTAGAAGGATGAAACAAACTTGGCTGGTGATAAGGCTTTTTGA

mRNA sequence

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATAAGGATGAAACAAACTTGGCTGGTGATAAGGCTTTTTGA

Coding sequence (CDS)

ATGGTTGCAACTTCTAAGTTCCTCTTTTTGGCTAAGGATGGAGAGGAACACAAGCTCTTCAATAACAAAGTTAAATCTATTGGAGGGATTTTGGATCAGACCTCCCATTTTGGTAATGGTGATAATGGTTCTACCTCTGGGCTAGATGTATCTCGATCAAAGCTGTCCAGACATTTCCAAGTAGCAGATAAGGATGAAACAAACTTGGCTGGTGATAAGGCTTTTTGA

Protein sequence

MVATSKFLFLAKDGEEHKLFNNKVKSIGGILDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKAF
Homology
[Close]
BLAST of HG10001018 vs. NCBI nr
Match: XP_022944300.1 (uncharacterized protein LOC111448786 isoform X2 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 120 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 163

[Close]
BLAST of HG10001018 vs. NCBI nr
Match: XP_023512555.1 (uncharacterized protein LOC111777262 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 120 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 163

[Close]
BLAST of HG10001018 vs. NCBI nr
Match: XP_022944299.1 (uncharacterized protein LOC111448786 isoform X1 [Cucurbita moschata])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 124 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 167

[Close]
BLAST of HG10001018 vs. NCBI nr
Match: KAG6570308.1 (hypothetical protein SDJN03_29223, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 113 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 156

[Close]
BLAST of HG10001018 vs. NCBI nr
Match: XP_023512556.1 (uncharacterized protein LOC111777262 isoform X3 [Cucurbita pepo subsp. pepo] >XP_023512557.1 uncharacterized protein LOC111777262 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 73.6 bits (179), Expect = 8.4e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 85  LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 128

[Close]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match: A0A6J1FVD5 (uncharacterized protein LOC111448786 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111448786 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 85  LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 128

[Close]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match: A0A6J1FWG5 (uncharacterized protein LOC111448786 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448786 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 124 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 167

[Close]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match: A0A6J1FYK8 (uncharacterized protein LOC111448786 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448786 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 4.1e-10
Identity = 37/44 (84.09%), Postives = 37/44 (84.09%), Query Frame = 0 

Query: 31  LDQTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           L   SHFGNGDN STSG DVSRSKLSRHFQVAD D TNLAGDKA
Sbjct: 120 LSGISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLAGDKA 163

[Close]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match: A0A6J1J8X1 (uncharacterized protein LOC111483665 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483665 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 33  QTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           + SHFGNGDN STSG DVSRSKLSRHFQVAD D TNL GD A
Sbjct: 173 EISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLTGDMA 214

[Close]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match: A0A6J1JDZ5 (uncharacterized protein LOC111483665 isoform X9 OS=Cucurbita maxima OX=3661 GN=LOC111483665 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 5.9e-09
Identity = 34/42 (80.95%), Postives = 35/42 (83.33%), Query Frame = 0 

Query: 33  QTSHFGNGDNGSTSGLDVSRSKLSRHFQVADKDETNLAGDKA 75
           + SHFGNGDN STSG DVSRSKLSRHFQVAD D TNL GD A
Sbjct: 69  EISHFGNGDNSSTSGPDVSRSKLSRHFQVADNDGTNLTGDMA 110

The following BLAST results are available for this feature:
BLAST of HG10001018 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022944300.18.4e-1084.09uncharacterized protein LOC111448786 isoform X2 [Cucurbita moschata][more]
XP_023512555.18.4e-1084.09uncharacterized protein LOC111777262 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_022944299.18.4e-1084.09uncharacterized protein LOC111448786 isoform X1 [Cucurbita moschata][more]
KAG6570308.18.4e-1084.09hypothetical protein SDJN03_29223, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023512556.18.4e-1084.09uncharacterized protein LOC111777262 isoform X3 [Cucurbita pepo subsp. pepo] >XP... [more]
BLAST of HG10001018 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10001018 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FVD54.1e-1084.09uncharacterized protein LOC111448786 isoform X3 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FWG54.1e-1084.09uncharacterized protein LOC111448786 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1FYK84.1e-1084.09uncharacterized protein LOC111448786 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1J8X15.9e-0980.95uncharacterized protein LOC111483665 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JDZ55.9e-0980.95uncharacterized protein LOC111483665 isoform X9 OS=Cucurbita maxima OX=3661 GN=L... [more]
BLAST of HG10001018 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10001018.1HG10001018.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane