HG10001003 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10001003
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Phospho-N-acetylmuramoyl-pentapeptide-transferase, putative
Location	Chr09: 13024605 .. 13024967 (-)
RNA-Seq Expression	HG10001003
Synteny	HG10001003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGTAAGCCTTGAATCAACGATTCATCAATTTCCCTCTTCCAAAAATTCCTCCTTTAACAATTTCAAGTTTCAATTTATTGTTTGAAACTGTAAATTTCTTTGTCTTTTTCGCTATTTTTGAGATTTGGGAAATTTAATTATGCAGGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAA

mRNA sequence

ATGAAGAAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAA

Coding sequence (CDS)

ATGAAGAAATCGGGATTCATCGCCGCCTCCGTTGCCGCTGCATCCGCCGCCGCCATCTCCGCCTCCCCTTCTTCCTCTACTCTTATCTGCAACCCAAAAGTTCAATTCCCTCGCCAGGAAGGAAAGGAAGGAGAGAACTCTTCGTCTTCAACGGATAAATTTGCTCCCAAATTTGATGGATTGAGATTTATTGAAACTCTTGTAACGGCTCACAGATAA

Protein sequence

MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGENSSSSTDKFAPKFDGLRFIETLVTAHR

Homology

[Close]

BLAST of HG10001003 vs. NCBI nr
Match: XP_038902353.1 (uncharacterized protein LOC120088987 [Benincasa hispida])

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 67/72 (93.06%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGENSSSSTDKFAPKFDG 60
          MKKSGFIAASVA   AAA+SASPSSSTL+CNPKVQFPRQEGKEGENSSSSTDKFAPKFDG
Sbjct: 1  MKKSGFIAASVA---AAAVSASPSSSTLVCNPKVQFPRQEGKEGENSSSSTDKFAPKFDG 60

Query: 61 LRFIETLVTAHR 73
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 69

[Close]

BLAST of HG10001003 vs. NCBI nr
Match: XP_004139940.2 (cell wall integrity and stress response component 1 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 8.3e-23
Identity = 67/86 (77.91%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGEN-------------- 60
          MKKSGFIAASVAAASA+A  ASPSSSTL+CNPKV FPRQEGKEGEN              
Sbjct: 1  MKKSGFIAASVAAASASAAVASPSSSTLVCNPKVLFPRQEGKEGENSSSSSSSSSSSSSS 60

Query: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 73
          SSSSTDKFAPKFDGLRFIETLVTAHR
Sbjct: 61 SSSSTDKFAPKFDGLRFIETLVTAHR 86

[Close]

BLAST of HG10001003 vs. NCBI nr
Match: XP_022140652.1 (uncharacterized protein LOC111011258 [Momordica charantia])

HSP 1 Score: 115.2 bits (287), Expect = 2.4e-22
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGENSSSSTDKFAPKFDG 60
          MKKS FIAASVA AS AA+SASPSSST +CNPKVQFPRQEGK  ENSSSS DKFAPKFDG
Sbjct: 1  MKKSAFIAASVAGAS-AAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 73
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 71

[Close]

BLAST of HG10001003 vs. NCBI nr
Match: KAG6604795.1 (hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 7.0e-22
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKE-GENSSSSTDKFAPKFD 60
          MKKSGFIAASV AA AAA+SASPSSSTL C+PK+QFPRQE KE GENSSSS DKFAPKFD
Sbjct: 1  MKKSGFIAASVTAA-AAAVSASPSSSTLFCDPKIQFPRQEEKELGENSSSSADKFAPKFD 60

Query: 61 GLRFIETLVTAHR 73
          GLRFIETLVTAHR
Sbjct: 61 GLRFIETLVTAHR 72

[Close]

BLAST of HG10001003 vs. NCBI nr
Match: XP_022970726.1 (uncharacterized protein LOC111469626 [Cucurbita maxima])

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKE-GENSSSSTDKFAPKFD 60
          MKKSGFIAAS+AAAS AA+SASPSSSTL C+PK+Q PRQE KE GENSSSS DKFAPKFD
Sbjct: 1  MKKSGFIAASIAAAS-AAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFD 60

Query: 61 GLRFIETLVTAHR 73
          GLRFIETLVTAHR
Sbjct: 61 GLRFIETLVTAHR 72

[Close]

BLAST of HG10001003 vs. ExPASy TrEMBL
Match: A0A6J1CHM8 (uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011258 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGENSSSSTDKFAPKFDG 60
          MKKS FIAASVA AS AA+SASPSSST +CNPKVQFPRQEGK  ENSSSS DKFAPKFDG
Sbjct: 1  MKKSAFIAASVAGAS-AAVSASPSSSTFVCNPKVQFPRQEGKVEENSSSSADKFAPKFDG 60

Query: 61 LRFIETLVTAHR 73
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 71

[Close]

BLAST of HG10001003 vs. ExPASy TrEMBL
Match: A0A6J1I1D6 (uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.6e-22
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKE-GENSSSSTDKFAPKFD 60
          MKKSGFIAAS+AAAS AA+SASPSSSTL C+PK+Q PRQE KE GENSSSS DKFAPKFD
Sbjct: 1  MKKSGFIAASIAAAS-AAVSASPSSSTLFCDPKIQLPRQEEKELGENSSSSADKFAPKFD 60

Query: 61 GLRFIETLVTAHR 73
          GLRFIETLVTAHR
Sbjct: 61 GLRFIETLVTAHR 72

[Close]

BLAST of HG10001003 vs. ExPASy TrEMBL
Match: E0CTD2 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.3e-15
Identity = 56/79 (70.89%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQE---GKEGENS----SSSTDK 60
          MKKSGF AASVAAASA AISA PSSS  +CN K+Q  R E   GK+ ENS    SSS D+
Sbjct: 1  MKKSGFFAASVAAASATAISA-PSSSGFLCNSKIQLSRDEAVAGKDIENSESQRSSSADR 60

Query: 61 FAPKFDGLRFIETLVTAHR 73
          FAP+FDGLRFIETLVTAHR
Sbjct: 61 FAPRFDGLRFIETLVTAHR 78

[Close]

BLAST of HG10001003 vs. ExPASy TrEMBL
Match: A0A5N5FS08 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039583 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEG---KEGENSSSSTDKFAPK 60
          MKK GF+AASVAAASA A+SA+ SSS+ + +  ++F  QE    +  E SS+ST+KFAPK
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGDKRNQEKSSASTEKFAPK 60

Query: 61 FDGLRFIETLVTAHR 73
          FDGLRFIETLVTAHR
Sbjct: 61 FDGLRFIETLVTAHR 75

[Close]

BLAST of HG10001003 vs. ExPASy TrEMBL
Match: A0A5N5H9S3 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_041112 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 2.2e-13
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEG---KEGENSSSSTDKFAPK 60
          MKK GF+AASVAAASA A+SA+ SSS+ + +  ++F  QE    +  E SS+ST+KFAPK
Sbjct: 1  MKKPGFLAASVAAASATALSATSSSSSFVSDSTMRFSHQEAGVKRNQEKSSASTEKFAPK 60

Query: 61 FDGLRFIETLVTAHR 73
          FDGLRFIETLVTAHR
Sbjct: 61 FDGLRFIETLVTAHR 75

[Close]

BLAST of HG10001003 vs. TAIR 10
Match: AT4G28290.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; Has 45 Blast hits to 45 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 67.0 bits (162), Expect = 7.0e-12
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 0


Query: 1  MKKSGFIAASVA-AASAAAISA-SPSSSTLICNPKVQFPRQEGKE------GENSSSSTD 60
          MKK+G IAAS++ AASA AISA S ++S    +P+    RQE KE      G +     +
Sbjct: 1  MKKTGIIAASISVAASATAISAGSTNTSVSFSSPESNLSRQEAKEKQRKKKGSSEDGGDE 60

Query: 61 KFAPKFDGLRFIETLVTAHR 73
          KFAP+FDGLRFIETLVTAHR
Sbjct: 61 KFAPRFDGLRFIETLVTAHR 80

[Close]

BLAST of HG10001003 vs. TAIR 10
Match: AT5G42110.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 2.0e-06
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 0


Query: 1  MKKSGFIAASVAAASAAAISASPSSSTLICNPKVQFPRQEGKEGENSSSSTDKFAPKFDG 60
          MK S  + ASV A S AA+S+  SS     +PKV   R+        ++ +D F P+FDG
Sbjct: 1  MKVSSGVVASVIAVSTAALSS--SSILPPVSPKVWESRK--------TNGSDNFEPRFDG 60

Query: 61 LRFIETLVTAHR 73
          LRFIETLVTAHR
Sbjct: 61 LRFIETLVTAHR 62

The following BLAST results are available for this feature:

BLAST of HG10001003 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902353.1	2.3e-25	93.06	uncharacterized protein LOC120088987 [Benincasa hispida]	[more]
XP_004139940.2	8.3e-23	77.91	cell wall integrity and stress response component 1 [Cucumis sativus]	[more]
XP_022140652.1	2.4e-22	87.50	uncharacterized protein LOC111011258 [Momordica charantia]	[more]
KAG6604795.1	7.0e-22	87.67	hypothetical protein SDJN03_02112, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022970726.1	1.6e-21	86.30	uncharacterized protein LOC111469626 [Cucurbita maxima]	[more]

BLAST of HG10001003 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10001003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHM8	1.2e-22	87.50	uncharacterized protein LOC111011258 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1I1D6	7.6e-22	86.30	uncharacterized protein LOC111469626 OS=Cucurbita maxima OX=3661 GN=LOC111469626...	[more]
E0CTD2	5.3e-15	70.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0028g03790 PE=4 SV=...	[more]
A0A5N5FS08	2.2e-13	64.00	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A5N5H9S3	2.2e-13	64.00	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of HG10001003 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28290.1	7.0e-12	55.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G42110.1	2.0e-06	48.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..54
None	No IPR available	PANTHER	PTHR34683	EXPRESSED PROTEIN-RELATED	coord: 1..72
None	No IPR available	PANTHER	PTHR34683:SF2	EXPRESSED PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10001003.1	HG10001003.1	mRNA