HG10000994 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000994
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	lanC-like protein GCL2
Location	Chr09: 12922659 .. 12923033 (-)
RNA-Seq Expression	HG10000994
Synteny	HG10000994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAACTTCGTACCAGAGGCAGAAACTGCAGCTGCTGCAGAATCAATTGAAGATTCTTTTCTAAAAGATCTCTCGATGCCATACCCAATTATCTCGGAGCGTTTTAAACGGGAAGCTTTGGACCTTAAAGAAACTGTAAGTATTCCTCTTCTTGTTCTGCATTTCGCTTTCATTTGGGTGTTTTTTTTAAATGCCCACCAGATGTTTGTGTTAATGTTTCAGACAGTAAGAGTAATTGGGCCACGTATGCATGATTTCACACTCTATTCTGGGCCTCTTGGAATGACTTTCTTGCTTTTAAAAGCTCACGAGGTCCCTTCAAATAACAATGATCTTAGACTCTGCGCTCAAATTGTTATGGCTTGTGATTAA

mRNA sequence

ATGCCAAACTTCGTACCAGAGGCAGAAACTGCAGCTGCTGCAGAATCAATTGAAGATTCTTTTCTAAAAGATCTCTCGATGCCATACCCAATTATCTCGGAGCGTTTTAAACGGGAAGCTTTGGACCTTAAAGAAACTACAGTAAGAGTAATTGGGCCACGTATGCATGATTTCACACTCTATTCTGGGCCTCTTGGAATGACTTTCTTGCTTTTAAAAGCTCACGAGGTCCCTTCAAATAACAATGATCTTAGACTCTGCGCTCAAATTGTTATGGCTTGTGATTAA

Coding sequence (CDS)

ATGCCAAACTTCGTACCAGAGGCAGAAACTGCAGCTGCTGCAGAATCAATTGAAGATTCTTTTCTAAAAGATCTCTCGATGCCATACCCAATTATCTCGGAGCGTTTTAAACGGGAAGCTTTGGACCTTAAAGAAACTACAGTAAGAGTAATTGGGCCACGTATGCATGATTTCACACTCTATTCTGGGCCTCTTGGAATGACTTTCTTGCTTTTAAAAGCTCACGAGGTCCCTTCAAATAACAATGATCTTAGACTCTGCGCTCAAATTGTTATGGCTTGTGATTAA

Protein sequence

MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTVRVIGPRMHDFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD

Homology

[Close]

BLAST of HG10000994 vs. NCBI nr
Match: XP_022140440.1 (lanC-like protein GCL2 [Momordica charantia])

HSP 1 Score: 130.2 bits (326), Expect = 9.6e-27
Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
           MP+FVP  ETAAA ES  DSFLKDLSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10  MPDFVP--ETAAAVESSGDSFLKDLSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61  DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           DFTLYSG LG   LLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70  DFTLYSGALGTALLLLKAHEVTSNHIDLSLCAQIVKACD 106

[Close]

BLAST of HG10000994 vs. NCBI nr
Match: KAG7010366.1 (LanC-like protein GCL2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. NCBI nr
Match: XP_022943721.1 (lanC-like protein GCL2 isoform X1 [Cucurbita moschata] >XP_022943722.1 lanC-like protein GCL2 isoform X1 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. NCBI nr
Match: KAG6570504.1 (LanC-like protein GCL2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. NCBI nr
Match: XP_022943723.1 (lanC-like protein GCL2 isoform X2 [Cucurbita moschata])

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. ExPASy Swiss-Prot
Match: Q8VZQ6 (LanC-like protein GCL2 OS=Arabidopsis thaliana OX=3702 GN=GCL2 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-17
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
           MP+FV E E+ +  +++ +     L+MPY  +S++ KR ALDLKET V       G  + 
Sbjct: 10  MPDFVKEKESVSGGDTLRNL----LAMPYSSLSQQLKRSALDLKETVVIETWGFSGQTVE 69

Query: 61  DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           DFTLYSG LG  FLL +A++V  N NDL LC +IV ACD
Sbjct: 70  DFTLYSGTLGAAFLLFRAYQVTGNANDLSLCLEIVKACD 104

[Close]

BLAST of HG10000994 vs. ExPASy Swiss-Prot
Match: F4IEM5 (LanC-like protein GCR2 OS=Arabidopsis thaliana OX=3702 GN=GCR2 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.8e-13
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESI---EDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGP 60
           MP FVPE + +   E++   +DS  K LS+PY   SE+  R AL +K+  V       G 
Sbjct: 10  MPEFVPE-DLSGEEETVTECKDSLTKLLSLPYKSFSEKLHRYALSIKDKVVWETWERSGK 69

Query: 61  RMHDFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           R+ D+ LY+G LG  +LL K+++V  N +DL+LC + V ACD
Sbjct: 70  RVRDYNLYTGVLGTAYLLFKSYQVTRNEDDLKLCLENVEACD 110

[Close]

BLAST of HG10000994 vs. ExPASy TrEMBL
Match: A0A6J1CF36 (lanC-like protein GCL2 OS=Momordica charantia OX=3673 GN=LOC111011116 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.6e-27
Identity = 72/99 (72.73%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
           MP+FVP  ETAAA ES  DSFLKDLSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10  MPDFVP--ETAAAVESSGDSFLKDLSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61  DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           DFTLYSG LG   LLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70  DFTLYSGALGTALLLLKAHEVTSNHIDLSLCAQIVKACD 106

[Close]

BLAST of HG10000994 vs. ExPASy TrEMBL
Match: A0A6J1FSH6 (lanC-like protein GCL2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448386 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-23
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. ExPASy TrEMBL
Match: A0A6J1FXB1 (lanC-like protein GCL2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448386 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.0e-23
Identity = 67/99 (67.68%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISERFKR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERFKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLY+G LG  FLLLKAHEV SN+ DL LCAQIV ACD
Sbjct: 70 DFTLYAGALGTAFLLLKAHEVTSNHIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. ExPASy TrEMBL
Match: A0A6J1JCS6 (lanC-like protein GCL2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483856 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-22
Identity = 66/99 (66.67%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISER KR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERLKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLYSG LG  FLLLKAHEV +N  DL LCAQIV ACD
Sbjct: 70 DFTLYSGALGTAFLLLKAHEVTANRIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. ExPASy TrEMBL
Match: A0A6J1J9S1 (lanC-like protein GCL2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483856 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 5.9e-22
Identity = 66/99 (66.67%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 1  MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
          MP+FVP  ETAAA ESI       LSMPYPIISER KR ALDLKE  V     V G R+ 
Sbjct: 10 MPDFVP--ETAAAVESI-------LSMPYPIISERLKRAALDLKEAIVLETWGVTGQRVR 69

Query: 61 DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
          DFTLYSG LG  FLLLKAHEV +N  DL LCAQIV ACD
Sbjct: 70 DFTLYSGALGTAFLLLKAHEVTANRIDLSLCAQIVKACD 99

[Close]

BLAST of HG10000994 vs. TAIR 10
Match: AT2G20770.1 (GCR2-like 2 )

HSP 1 Score: 89.4 bits (220), Expect = 1.7e-18
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESIEDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGPRMH 60
           MP+FV E E+ +  +++ +     L+MPY  +S++ KR ALDLKET V       G  + 
Sbjct: 10  MPDFVKEKESVSGGDTLRNL----LAMPYSSLSQQLKRSALDLKETVVIETWGFSGQTVE 69

Query: 61  DFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           DFTLYSG LG  FLL +A++V  N NDL LC +IV ACD
Sbjct: 70  DFTLYSGTLGAAFLLFRAYQVTGNANDLSLCLEIVKACD 104

[Close]

BLAST of HG10000994 vs. TAIR 10
Match: AT1G52920.1 (G protein coupled receptor )

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-14
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 0


Query: 1   MPNFVPEAETAAAAESI---EDSFLKDLSMPYPIISERFKREALDLKETTV----RVIGP 60
           MP FVPE + +   E++   +DS  K LS+PY   SE+  R AL +K+  V       G 
Sbjct: 10  MPEFVPE-DLSGEEETVTECKDSLTKLLSLPYKSFSEKLHRYALSIKDKVVWETWERSGK 69

Query: 61  RMHDFTLYSGPLGMTFLLLKAHEVPSNNNDLRLCAQIVMACD 96
           R+ D+ LY+G LG  +LL K+++V  N +DL+LC + V ACD
Sbjct: 70  RVRDYNLYTGVLGTAYLLFKSYQVTRNEDDLKLCLENVEACD 110

[Close]

BLAST of HG10000994 vs. TAIR 10
Match: AT5G65280.1 (GCR2-like 1 )

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 31/89 (34.83%), Postives = 42/89 (47.19%), Query Frame = 0


Query: 19  DSFLKDLSMP-YPIISERFKREALDLKETTVRVI------------GPRMHDFTLYSGPL 78
           D  L + S P   + +E F R A  LK   V               GP + D T+Y+G L
Sbjct: 31  DHLLSEPSAPTISLPTESFLRAATLLKNQVVEATWKGGVEALASGSGPVL-DPTVYTGLL 90

Query: 79  GMTFLLLKAHEVPSNNNDLRLCAQIVMAC 95
           G  F  LK++EV  N+ DL  CA+I+  C
Sbjct: 91  GTAFTCLKSYEVTRNHQDLLTCAEIIDTC 118

The following BLAST results are available for this feature:

BLAST of HG10000994 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140440.1	9.6e-27	72.73	lanC-like protein GCL2 [Momordica charantia]	[more]
KAG7010366.1	1.9e-22	67.68	LanC-like protein GCL2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943721.1	1.9e-22	67.68	lanC-like protein GCL2 isoform X1 [Cucurbita moschata] >XP_022943722.1 lanC-like...	[more]
KAG6570504.1	1.9e-22	67.68	LanC-like protein GCL2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943723.1	1.9e-22	67.68	lanC-like protein GCL2 isoform X2 [Cucurbita moschata]	[more]

BLAST of HG10000994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZQ6	2.5e-17	47.47	LanC-like protein GCL2 OS=Arabidopsis thaliana OX=3702 GN=GCL2 PE=2 SV=1	[more]
F4IEM5	2.8e-13	41.18	LanC-like protein GCR2 OS=Arabidopsis thaliana OX=3702 GN=GCR2 PE=1 SV=1	[more]

BLAST of HG10000994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CF36	4.6e-27	72.73	lanC-like protein GCL2 OS=Momordica charantia OX=3673 GN=LOC111011116 PE=3 SV=1	[more]
A0A6J1FSH6	9.0e-23	67.68	lanC-like protein GCL2 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448386 ...	[more]
A0A6J1FXB1	9.0e-23	67.68	lanC-like protein GCL2 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448386 ...	[more]
A0A6J1JCS6	5.9e-22	66.67	lanC-like protein GCL2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483856 PE...	[more]
A0A6J1J9S1	5.9e-22	66.67	lanC-like protein GCL2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483856 PE...	[more]

BLAST of HG10000994 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20770.1	1.7e-18	47.47	GCR2-like 2	[more]
AT1G52920.1	2.0e-14	41.18	G protein coupled receptor	[more]
AT5G65280.1	1.1e-04	34.83	GCR2-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012341	Six-hairpin glycosidase-like superfamily	GENE3D	1.50.10.10		coord: 1..95 e-value: 3.1E-11 score: 44.3
None	No IPR available	PANTHER	PTHR12736:SF22	LANC-LIKE PROTEIN GCL2	coord: 1..95
None	No IPR available	PANTHER	PTHR12736	LANC-LIKE PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000994.1	HG10000994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process