Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGACAAATGGGGGGGTGGAAAAAGAACAGTACCCACTATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAGTATTTGTGGGTTTGATCTGTGTGTGTCTGTGCTAA mRNA sequence
ATGCAAGACAAATGGGGGGGTGGAAAAAGAACAGTACCCACTATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAGTATTTGTGGGTTTGATCTGTGTGTGTCTGTGCTAA Coding sequence (CDS)
ATGCAAGACAAATGGGGGGGTGGAAAAAGAACAGTACCCACTATGGCATCTGAGAGAAGAAGTGGGCGGAGCAATAAGGCGGCAGTGGAGGTGGAGGTGGAGGTGGCGGTGGTGGTAGCCTTGGCCGTCCTGATGAGTGGGTCCGGGCGGTGGGCACCACAGGAAAAGGGATTGGGAAGGGGAAACAATGAGAAGCAGAGGAAGAGGAGAAGAAGAAGAAGAAGAAGAAGAATGGATTGGGGGAAAGGAAAAGGAAAAGGAATGACATTTCTTCACTTTTGGGTTGACCAGGTGGAATTTGCAATTTCTGGGAGCGAAGTATTTGTGGGTTTGATCTGTGTGTGTCTGTGCTAA Protein sequence
MQDKWGGGKRTVPTMASERRSGRSNKAAVEVEVEVAVVVALAVLMSGSGRWAPQEKGLGRGNNEKQRKRRRRRRRRRMDWGKGKGKGMTFLHFWVDQVEFAISGSEVFVGLICVCLC
Homology
BLAST of HG10000987 vs. ExPASy TrEMBL
Match:
A0A0A0KB46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128630 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.6e-11
Identity = 55/77 (71.43%), Postives = 57/77 (74.03%), Query Frame = 0
Query: 15 MASERRSGRSNKAAVEVEVEVAVVVALAVLMSGSGRWAPQEKGLGRGNNEKQRKRRRRRR 74 M SE RS AV V V VA VVALAVL SGSGRWAPQEKGLGRGN EKQR+RRR R Sbjct: 1 MTSEGRS------AVAVAVAVA-VVALAVLKSGSGRWAPQEKGLGRGNKEKQRRRRRGRG 60 Query: 75 RRRMDWG-KGKGKGMTF 91 R RM+ G GKGKGMTF Sbjct: 61 RGRMELGVYGKGKGMTF 70
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0KB46 2.6e-11 71.43 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G128630 PE=4 SV=1 [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
A T G C A A G A C A A A T G G G G G G G T G G A A A A A G A A C A G T A C C C A C T A T G G C A T C T G A G A G A A G A A G T G G G C G G A G C A A T A A G G C G G C A G T G G A G G T G G A G G T G G A G G T G G C G G T G G T G G T A G C C T T G G C C G T C C T G A T G A G T G G G T C C G G G C G G T G G G C A C C A C A G G A A A A G G G A T T G G G A A G G G G A A A C A A T G A G A A G C A G A G G A A G A G G A G A A G A A G A A G A A G A A G A A G A A G A A T G G A T T G G G G G A A A G G A A A A G G A A A A G G A A T G A C A T T T C T T C A C T T T T G G G T T G A C C A G G T G G A A T T T G C A A T T T C T G G G A G C G A A G T A T T T G T G G G T T T G A T C T G T G T G T G T C T G T G C T A A 50 100 150 200 250 300 350 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 50..83
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..23
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 63..81
Relationships
The following mRNA feature(s) are a part of this gene: