HG10000978 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000978
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chromosome transmission fidelity protein
Location	Chr09: 12697943 .. 12698149 (-)
RNA-Seq Expression	HG10000978
Synteny	HG10000978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGCTTTTGCTTTATGGTGGATCAGAAGCGGAAGGTGCGGCGGAGTAGGCCGGCGCCTGGAATTTGCTCCAGGTGCGGCGGAGGAGCCAGCGTAGCCGATATGAAAACCGCCACTAGATTCTGTCACGTTCCCTTTTATTGGAAATCCTGGAGAGCACTCATTTGTACCTTTTGTGGATCTGTTCTTCGATCTTATCGCTAA

mRNA sequence

ATGGTTTGCTTTTGCTTTATGGTGGATCAGAAGCGGAAGGTGCGGCGGAGTAGGCCGGCGCCTGGAATTTGCTCCAGGTGCGGCGGAGGAGCCAGCGTAGCCGATATGAAAACCGCCACTAGATTCTGTCACGTTCCCTTTTATTGGAAATCCTGGAGAGCACTCATTTGTACCTTTTGTGGATCTGTTCTTCGATCTTATCGCTAA

Coding sequence (CDS)

ATGGTTTGCTTTTGCTTTATGGTGGATCAGAAGCGGAAGGTGCGGCGGAGTAGGCCGGCGCCTGGAATTTGCTCCAGGTGCGGCGGAGGAGCCAGCGTAGCCGATATGAAAACCGCCACTAGATTCTGTCACGTTCCCTTTTATTGGAAATCCTGGAGAGCACTCATTTGTACCTTTTGTGGATCTGTTCTTCGATCTTATCGCTAA

Protein sequence

MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFCGSVLRSYR

Homology

[Close]

BLAST of HG10000978 vs. NCBI nr
Match: XP_038902212.1 (uncharacterized protein LOC120088840 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 7.5e-34
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. NCBI nr
Match: XP_022944461.1 (uncharacterized protein LOC111448908 [Cucurbita moschata] >XP_023511881.1 uncharacterized protein LOC111776763 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.6 bits (379), Expect = 4.9e-33
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQKR++RRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. NCBI nr
Match: XP_008448201.1 (PREDICTED: uncharacterized protein LOC103490465 [Cucumis melo])

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MV FCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVFFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. NCBI nr
Match: XP_022986417.1 (uncharacterized protein LOC111484159 [Cucurbita maxima])

HSP 1 Score: 149.1 bits (375), Expect = 1.4e-32
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQKR+++RSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVCFCFLVDQKRRIQRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. NCBI nr
Match: XP_022140680.1 (uncharacterized protein LOC111011282 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 5.4e-32
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VD+KR+VRRSRPAPGICSRCGGGA VADMKTATRFCHVPFYWKSWRA+ICTFC
Sbjct: 1  MVCFCFLVDEKRRVRRSRPAPGICSRCGGGARVADMKTATRFCHVPFYWKSWRAIICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. ExPASy TrEMBL
Match: A0A6J1FUH3 (uncharacterized protein LOC111448908 OS=Cucurbita moschata OX=3662 GN=LOC111448908 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.4e-33
Identity = 65/68 (95.59%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQKR++RRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVCFCFLVDQKRRIRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. ExPASy TrEMBL
Match: A0A6J1J7G8 (uncharacterized protein LOC111484159 OS=Cucurbita maxima OX=3661 GN=LOC111484159 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.9e-33
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQKR+++RSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVCFCFLVDQKRRIQRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. ExPASy TrEMBL
Match: A0A1S3BJR8 (uncharacterized protein LOC103490465 OS=Cucumis melo OX=3656 GN=LOC103490465 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.9e-33
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MV FCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC
Sbjct: 1  MVFFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. ExPASy TrEMBL
Match: A0A6J1CFS7 (uncharacterized protein LOC111011282 OS=Momordica charantia OX=3673 GN=LOC111011282 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.6e-32
Identity = 63/68 (92.65%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VD+KR+VRRSRPAPGICSRCGGGA VADMKTATRFCHVPFYWKSWRA+ICTFC
Sbjct: 1  MVCFCFLVDEKRRVRRSRPAPGICSRCGGGARVADMKTATRFCHVPFYWKSWRAIICTFC 60

Query: 61 GSVLRSYR 69
          GSVLRSYR
Sbjct: 61 GSVLRSYR 68

[Close]

BLAST of HG10000978 vs. ExPASy TrEMBL
Match: A0A6P6S4N3 (uncharacterized protein LOC113687797 OS=Coffea arabica OX=13443 GN=LOC113687800 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 8.4e-31
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQ RKVRRS+PA GICSRCGGGASVADMKTATRFCHVPFYWK+WRA+ICTFC
Sbjct: 1  MVCFCFLVDQTRKVRRSKPAAGICSRCGGGASVADMKTATRFCHVPFYWKTWRAIICTFC 60

Query: 61 GSVLRSYR 69
          G++LRSYR
Sbjct: 61 GAILRSYR 68

[Close]

BLAST of HG10000978 vs. TAIR 10
Match: AT1G52855.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 122.9 bits (307), Expect = 1.0e-28
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQ RKV+RS+PA G CSRCG  AS+ADMKT+TRFC +P YW+SWRA++C+FC
Sbjct: 1  MVCFCFLVDQTRKVKRSKPAAGTCSRCGHCASIADMKTSTRFCFIPIYWRSWRAVVCSFC 60

Query: 61 GSVLRSYR 69
          GSVL+SYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of HG10000978 vs. TAIR 10
Match: AT3G15534.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52855.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.0 bits (297), Expect = 1.5e-27
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          MVCFCF+VDQKRKV+ S+PA G CSRCG GA VADMKT+TRFC +P Y +SWRA++C+FC
Sbjct: 1  MVCFCFLVDQKRKVKGSKPAAGTCSRCGRGARVADMKTSTRFCLIPIYCRSWRAIVCSFC 60

Query: 61 GSVLRSYR 69
          GSVL+SYR
Sbjct: 61 GSVLKSYR 68

[Close]

BLAST of HG10000978 vs. TAIR 10
Match: AT2G20835.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15534.1); Has 66 Blast hits to 66 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-24
Identity = 44/67 (65.67%), Postives = 57/67 (85.07%), Query Frame = 0


Query: 1  MVCFCFMVDQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 60
          M  FCF+VDQ++KVR  +PA G+CSRCGGGA VADM+T+TRFC VPFY K+W+A++C  C
Sbjct: 1  MAIFCFLVDQRKKVRGRKPAAGLCSRCGGGAVVADMRTSTRFCGVPFYRKAWKAIVCHIC 60

Query: 61 GSVLRSY 68
          G+VL+SY
Sbjct: 61 GAVLKSY 67

[Close]

BLAST of HG10000978 vs. TAIR 10
Match: AT4G29905.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G57123.1); Has 73 Blast hits to 73 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.6 bits (96), Expect = 3.0e-04
Identity = 19/52 (36.54%), Postives = 30/52 (57.69%), Query Frame = 0


Query: 9  DQKRKVRRSRPAPGICSRCGGGASVADMKTATRFCHVPFYWKSWRALICTFC 61
          ++K ++ R + APG+C  CGG  S  D++T   FC +P  +K  R   C+ C
Sbjct: 9  EEKTELGRQQ-APGMCPYCGGKVSAVDIETKWLFCFLPLCFKVKRKYSCSSC 59

The following BLAST results are available for this feature:

BLAST of HG10000978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902212.1	7.5e-34	100.00	uncharacterized protein LOC120088840 [Benincasa hispida]	[more]
XP_022944461.1	4.9e-33	95.59	uncharacterized protein LOC111448908 [Cucurbita moschata] >XP_023511881.1 unchar...	[more]
XP_008448201.1	1.4e-32	98.53	PREDICTED: uncharacterized protein LOC103490465 [Cucumis melo]	[more]
XP_022986417.1	1.4e-32	94.12	uncharacterized protein LOC111484159 [Cucurbita maxima]	[more]
XP_022140680.1	5.4e-32	92.65	uncharacterized protein LOC111011282 [Momordica charantia]	[more]

BLAST of HG10000978 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10000978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUH3	2.4e-33	95.59	uncharacterized protein LOC111448908 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A6J1J7G8	6.9e-33	94.12	uncharacterized protein LOC111484159 OS=Cucurbita maxima OX=3661 GN=LOC111484159...	[more]
A0A1S3BJR8	6.9e-33	98.53	uncharacterized protein LOC103490465 OS=Cucumis melo OX=3656 GN=LOC103490465 PE=...	[more]
A0A6J1CFS7	2.6e-32	92.65	uncharacterized protein LOC111011282 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6P6S4N3	8.4e-31	88.24	uncharacterized protein LOC113687797 OS=Coffea arabica OX=13443 GN=LOC113687800 ...	[more]

BLAST of HG10000978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G52855.1	1.0e-28	73.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G15534.1	1.5e-27	73.53	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20835.1	2.6e-24	65.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G29905.1	3.0e-04	36.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33320	METHIONYL-TRNA SYNTHETASE	coord: 1..67
None	No IPR available	PANTHER	PTHR33320:SF2	OS07G0564200 PROTEIN	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000978.1	HG10000978.1	mRNA