Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAATTTGCTCCCAACTCCAACACTGCGTCTGCCCCTGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACTCGGAGCCACTTAACTCTTTTGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGCCCATACACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCATTGATGTTAGGTCTGAAGACTTTGAGCCAGAAGTGCAGGCAAGTGGTGAGGCTTGTAGTAAGTCTACCGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAGGTTAGTTTGGTTCTTGATGGTGGGTGCACCGCGAACGTTGAGTTGGAATCTCAAGAGGATGATGGTGAAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAAAATTCATCATCTTCCAGTAGCGATGACAGCAATTGCGATGATGAAGAAGAAAAGGAGGACATGGTAAAAGCAGAGGGACAGAGAGAAATCGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTGACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAGACCTCGATTGTGATGGTGAAGACCTCGACGGAGAAGACGAAGAGGCTGGGGTTGGAGGACGTTGA
mRNA sequence
ATGGTAGAATTTGCTCCCAACTCCAACACTGCGTCTGCCCCTGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACTCGGAGCCACTTAACTCTTTTGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGCCCATACACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCATTGATGTTAGGTCTGAAGACTTTGAGCCAGAAGTGCAGGCAAGTGGTGAGGCTTGTAGTAAGTCTACCGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAGGTTAGTTTGGTTCTTGATGGTGGGTGCACCGCGAACGTTGAGTTGGAATCTCAAGAGGATGATGGTGAAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAAAATTCATCATCTTCCAGTAGCGATGACAGCAATTGCGATGATGAAGAAGAAAAGGAGGACATGGTAAAAGCAGAGGGACAGAGAGAAATCGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTGACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAGACCTCGATTGTGATGGTGAAGACCTCGACGGAGAAGACGAAGAGGCTGGGGTTGGAGGACGTTGA
Coding sequence (CDS)
ATGGTAGAATTTGCTCCCAACTCCAACACTGCGTCTGCCCCTGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACTCGGAGCCACTTAACTCTTTTGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGCCCATACACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCATTGATGTTAGGTCTGAAGACTTTGAGCCAGAAGTGCAGGCAAGTGGTGAGGCTTGTAGTAAGTCTACCGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAGGTTAGTTTGGTTCTTGATGGTGGGTGCACCGCGAACGTTGAGTTGGAATCTCAAGAGGATGATGGTGAAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAAAATTCATCATCTTCCAGTAGCGATGACAGCAATTGCGATGATGAAGAAGAAAAGGAGGACATGGTAAAAGCAGAGGGACAGAGAGAAATCGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTGACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAGACCTCGATTGTGATGGTGAAGACCTCGACGGAGAAGACGAAGAGGCTGGGGTTGGAGGACGTTGA
Protein sequence
MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELTSPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLNSIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEIDEEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAWDSDGEDLDCDGEDLDGEDEEAGVGGR
Homology
BLAST of HG10000977 vs. NCBI nr
Match:
XP_008466591.1 (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo] >KAA0041662.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa] >TYJ97966.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 369.4 bits (947), Expect = 2.6e-98
Identity = 217/265 (81.89%), Postives = 236/265 (89.06%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEF+PNSN AS PDGLLHASSKLKNSEPL+SFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1 MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQTLLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEACS STDLN
Sbjct: 61 SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGESDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEE+SSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD DDEDEEASADDMVAW
Sbjct: 181 EEEESSSSSSSGDY---DDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEAG G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEAGAEG 262
BLAST of HG10000977 vs. NCBI nr
Match:
XP_016902388.1 (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo] >TYK11128.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 364.8 bits (935), Expect = 6.5e-97
Identity = 215/265 (81.13%), Postives = 232/265 (87.55%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPNSNT SAPDGLLH SSKLKNS PL+SFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1 MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQ LLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEAC+ STDLN
Sbjct: 61 SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGE+DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEENSSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD D EDEEASADDMVAW
Sbjct: 181 EEEENSSSSSSSDY---DDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEA G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEARAEG 262
BLAST of HG10000977 vs. NCBI nr
Match:
KAA0042953.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 359.8 bits (922), Expect = 2.1e-95
Identity = 215/270 (79.63%), Postives = 233/270 (86.30%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPNSNT SAPDGLLH SSKLKNSEPL+SFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1 MVEFAPNSNTTSAPDGLLHTSSKLKNSEPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQ LLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEAC+ STDLN
Sbjct: 61 SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGE+DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
+EEENSSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD D EDEEASADDMVAW
Sbjct: 181 KEEENSSSSSSSDY---DDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAW 240
Query: 241 DS-----DGEDLDCDGEDLDGEDEEAGVGG 266
D+ DGEDLD D EDLDGE+EEA G
Sbjct: 241 DNDGEDLDGEDLDGDDEDLDGEEEEARAEG 267
BLAST of HG10000977 vs. NCBI nr
Match:
XP_031736889.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 [Cucumis sativus])
HSP 1 Score: 354.8 bits (909), Expect = 6.7e-94
Identity = 214/291 (73.54%), Postives = 234/291 (80.41%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPN+NTASAPDGLLH SSKLKNSEPL+SFDSKAIDYS DSFLDYDSLNDW DELT
Sbjct: 1 MVEFAPNTNTASAPDGLLHDSSKLKNSEPLDSFDSKAIDYSLVDSFLDYDSLNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQAS----------- 120
SPNM TQTLLPE DAHL+QSV+KSVPVID VQ VRSEDF+ E++ S
Sbjct: 61 SPNMVDTQTLLPEGDAHLSQSVQKSVPVIDGVQSNFVRSEDFKIEMKTSGEACSNSTDFN 120
Query: 121 ---------------GEACSKSTDLNSIIEEGMSKVSLVLDGGCTANVELESQEDDGESD 180
GEACS STD NSIIEEGMSKVSLVLDGGC + VELES+ DDGE D
Sbjct: 121 SITEEGMPKVTLVLDGEACSNSTDFNSIIEEGMSKVSLVLDGGCISKVELESEADDGEGD 180
Query: 181 VESEGTSSTSTSSSSSSGRSSDSEIDEEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREI 240
VESEGTSS STSSSSSSG SSD+E+DEEEE+SSSS+S + CDDEEEKE++V+AEG+REI
Sbjct: 181 VESEGTSSASTSSSSSSGGSSDNEVDEEEEDSSSSTS--AGCDDEEEKENIVEAEGKREI 240
Query: 241 GELEEGEIRDVDDEDEEASADDMVAWDSDGEDLDCDGEDLDGEDEEAGVGG 266
GELEEGEIRD DDEDEEA ADDMVAWD+DGEDL D EDLDGE+EEAG G
Sbjct: 241 GELEEGEIRDADDEDEEAFADDMVAWDNDGEDLKEDDEDLDGEEEEAGAEG 289
BLAST of HG10000977 vs. NCBI nr
Match:
XP_022970813.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucurbita maxima])
HSP 1 Score: 292.0 bits (746), Expect = 5.3e-75
Identity = 185/269 (68.77%), Postives = 210/269 (78.07%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSE--PLNSFDSKAIDYSFADSFLDYDSLNDWIDE 60
MVE + NS TASAPDGLLHASSKLKNSE PL+SFDSK +DYSFADSFLDYDSLNDWIDE
Sbjct: 1 MVELSSNSTTASAPDGLLHASSKLKNSEPLPLDSFDSKPVDYSFADSFLDYDSLNDWIDE 60
Query: 61 LTSPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTD 120
TSP MA QT+LPEA++H+NQ VEKSVP++ +QPI QA GEAC+KSTD
Sbjct: 61 FTSPVMADAQTILPEAESHVNQPVEKSVPIVGEIQPI----------AQAGGEACAKSTD 120
Query: 121 LNSIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSS-SSSSGRSSDS 180
LN IIEEGMSKVSLV+DGG T N+E +S+EDD ESD ESEGTSS STSS SSSS SSD
Sbjct: 121 LNCIIEEGMSKVSLVIDGGSTGNIESDSREDDDESDAESEGTSSASTSSDSSSSSGSSDD 180
Query: 181 EIDEEEENSSSSSSDDSNC-DDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADD 240
D++EE+SSSSSS DS+C DD E KE+ VKA+ EIGELEEGEI D D+ED+EASADD
Sbjct: 181 GKDDDEESSSSSSSGDSSCHDDVETKENSVKADVHTEIGELEEGEISDADNEDKEASADD 240
Query: 241 MVAWDSDGEDLDCDGEDLDGEDEEAGVGG 266
MVAWD DGE+LD E+EEAG G
Sbjct: 241 MVAWDGDGEELD--------EEEEAGPEG 251
BLAST of HG10000977 vs. ExPASy TrEMBL
Match:
A0A5A7TE26 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00720 PE=3 SV=1)
HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98
Identity = 217/265 (81.89%), Postives = 236/265 (89.06%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEF+PNSN AS PDGLLHASSKLKNSEPL+SFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1 MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQTLLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEACS STDLN
Sbjct: 61 SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGESDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEE+SSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD DDEDEEASADDMVAW
Sbjct: 181 EEEESSSSSSSGDY---DDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEAG G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEAGAEG 262
BLAST of HG10000977 vs. ExPASy TrEMBL
Match:
A0A1S3CRN9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN=LOC103503966 PE=3 SV=1)
HSP 1 Score: 369.4 bits (947), Expect = 1.3e-98
Identity = 217/265 (81.89%), Postives = 236/265 (89.06%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEF+PNSN AS PDGLLHASSKLKNSEPL+SFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1 MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQTLLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEACS STDLN
Sbjct: 61 SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGESDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEE+SSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD DDEDEEASADDMVAW
Sbjct: 181 EEEESSSSSSSGDY---DDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEAG G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEAGAEG 262
BLAST of HG10000977 vs. ExPASy TrEMBL
Match:
A0A5D3CIV9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00340 PE=3 SV=1)
HSP 1 Score: 364.8 bits (935), Expect = 3.1e-97
Identity = 215/265 (81.13%), Postives = 232/265 (87.55%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPNSNT SAPDGLLH SSKLKNS PL+SFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1 MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQ LLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEAC+ STDLN
Sbjct: 61 SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGE+DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEENSSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD D EDEEASADDMVAW
Sbjct: 181 EEEENSSSSSSSDY---DDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEA G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEARAEG 262
BLAST of HG10000977 vs. ExPASy TrEMBL
Match:
A0A1S4E2D7 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN=LOC103498379 PE=3 SV=1)
HSP 1 Score: 364.8 bits (935), Expect = 3.1e-97
Identity = 215/265 (81.13%), Postives = 232/265 (87.55%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPNSNT SAPDGLLH SSKLKNS PL+SFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1 MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQ LLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEAC+ STDLN
Sbjct: 61 SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGE+DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
EEEENSSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD D EDEEASADDMVAW
Sbjct: 181 EEEENSSSSSSSDY---DDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAW 240
Query: 241 DSDGEDLDCDGEDLDGEDEEAGVGG 266
D+DGEDLD D EDLDGE+EEA G
Sbjct: 241 DNDGEDLDGDDEDLDGEEEEARAEG 262
BLAST of HG10000977 vs. ExPASy TrEMBL
Match:
A0A5A7TI04 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00250 PE=3 SV=1)
HSP 1 Score: 359.8 bits (922), Expect = 1.0e-95
Identity = 215/270 (79.63%), Postives = 233/270 (86.30%), Query Frame = 0
Query: 1 MVEFAPNSNTASAPDGLLHASSKLKNSEPLNSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
MVEFAPNSNT SAPDGLLH SSKLKNSEPL+SFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1 MVEFAPNSNTTSAPDGLLHTSSKLKNSEPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60
Query: 61 SPNMAHTQTLLPEADAHLNQSVEKSVPVIDAVQPIDVRSEDFEPEVQASGEACSKSTDLN 120
SPNM TQ LLPE DAHL+QSVEKSVPVID VQ VRSEDF+ E+QASGEAC+ STDLN
Sbjct: 61 SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120
Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGESDVESEGTSSTSTSSSSSSGRSSDSEID 180
SIIEEGMSKVSLVLDGGCT+ VELES+ DDGE+DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180
Query: 181 EEEENSSSSSSDDSNCDDEEEKEDMVKAEGQREIGELEEGEIRDVDDEDEEASADDMVAW 240
+EEENSSSSSS D D+EE+E +V+AEG+REIGELEEGEIRD D EDEEASADDMVAW
Sbjct: 181 KEEENSSSSSSSDY---DDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAW 240
Query: 241 DS-----DGEDLDCDGEDLDGEDEEAGVGG 266
D+ DGEDLD D EDLDGE+EEA G
Sbjct: 241 DNDGEDLDGEDLDGDDEDLDGEEEEARAEG 267
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008466591.1 | 2.6e-98 | 81.89 | PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1... | [more] |
XP_016902388.1 | 6.5e-97 | 81.13 | PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1... | [more] |
KAA0042953.1 | 2.1e-95 | 79.63 | H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis m... | [more] |
XP_031736889.1 | 6.7e-94 | 73.54 | H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 [Cucumis sativu... | [more] |
XP_022970813.1 | 5.3e-75 | 68.77 | H/ACA ribonucleoprotein complex non-core subunit NAF1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7TE26 | 1.3e-98 | 81.89 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw... | [more] |
A0A1S3CRN9 | 1.3e-98 | 81.89 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN... | [more] |
A0A5D3CIV9 | 3.1e-97 | 81.13 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw... | [more] |
A0A1S4E2D7 | 3.1e-97 | 81.13 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN... | [more] |
A0A5A7TI04 | 1.0e-95 | 79.63 | H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw... | [more] |
Match Name | E-value | Identity | Description | |