HG10000971 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000971
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSYP124 protein
LocationChr09: 12616571 .. 12618862 (+)
RNA-Seq ExpressionHG10000971
SyntenyHG10000971
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGGTAGGTTTCATCTCCCGATCTCATTTTTATGAATTTAGATCATCCGCTTCGACTTATTTCATTTTTGGATTTGTTCAATCTTCTATGTTCTCTGGATTTTTTGGAGTTTCATTTCGAAATGGAATTGTGGTTATATTTTTTTTCCCCAAGTTCTGTTTTTAGGTCTGGCTCAATATTTTCAAGGTATGCATTGATCTAAGGATCTTGAAAGGTGCGAATTTTTTTAGTTTTTGGAATGCATTTTACGTAATTAGACAACCCAGATTTTCTATGAGGAGATTTCACTATTATTCTTCGATAACGAAGGTTGTTGTCTTATGTCTATAATCGAAATGGGTATGAAGCATACTGAACTCTGATTTTAACCTCAATCTGGCAACAGAAAATTTCCAAGATATGGAAATTTTGGACTTGTATTTTTCTTGCATATTGTTACATCATTTGCTTCAACTGGGGACTGCTGCTATAGCTTTAACGGTGAAGTTTAAACAATGAAACATTGGTAGATTTATCACAATGAAAATGCAGGCATTGCATTATTACTTGCACTCCACCACTTCGTTGAGTGTTTGATGCAGATCGTTGTTATGTTTTAAAAGTACTATAATTTGCAAAAGTTATAATGGGGTTTTTCTTAGCCCTTTCTCTAGTGGGGTTTTGGTGGGCTTGTTTTGTTATATGCTCCCGTGTACTTTCATTTTTTTTTTTTGTCAATGAAGGCAGTTGTTAATGTATTAATAAAAATTGCTAAAAATTAGTTTGCTAATTTGAAAGATATATGTCAACACTACACATGAATACCTGCCATGTAGTAAAGATACAACAGTTTCGAAAGAATAACCTGCATACTGAATGGAACATAGAAAACCACCTGTGCATAAGACAGTCAACTGATTAGTAAAATTACTCATACTGGGTTATATAATTTTCTTTAAAATTTAACTTTCAGGGTCTTATCTAAAAAAACAAAAAATAACTTTCAGCGTTTGTTTACAAGACTACATTCTACACATGCATTTGGACTCGACTTCTTGTATTCCCTTTTGTAATGTTTGTTGTTGGAGAAAGATGAACGAATAATCAAACATTAAAGGAAAAGAAAGGAAACATCAAAAGATGAACAAATGAGCTTTTTTCTTTCAAGTATGACCCTCTTTGTTGATATTTGCAGACCACCATGGACCACCGAAGATTAACTGCTGGCAAGATCCAATGAGCCCATCTAAATGGAAGGAAGAGCATGTGAGACTTATTTTTCATATGAAACTACTAGCTTCTTTTTCTTTTCGTTTTTTTCAATTATTTTATTAATTTTTTGGTCTTTTTTCTTTTTTGTTCTTCCTATTTGCTCTCATCAAGTAGGAGGATTTAAGAATGAGATGTTAACCTTTCTAGACTTTCTATCAGAATCTCTTATTTATAATCAACTCAACAAAATACTTGATTTTGTTGTTTAAGAGTTCTTTTTGAACTCCATATTTTATGTAGTTTCATCAGTCACTTGTAGTGTTGTATTAGATTAGTTTCATTAAAGCTATAATTTGGAATTTATGGGTTCAATTTAGAGCTAAATGCAGCTGTTTGCCTCACAGTCACTGTATTACCTGTTCTCTTTGCTTTGCATAGGCTTTGAAGTCGAAAATTCTACTCCCTTAAATTTATTAGTTTTGCTTGAAACTTATGAGTCTTAGGTAGAATGCCCTGTTCTCCTTAGGTGTTCTTCTAGTTGGTGAAGAATTGATAAACAATGACTGCCCTCTTCTCTTAAGTGTTCTTCTTGACGTGGAGAATAAATAATTAATAAACAATGGCCTAATTATCATACTTGTGCCGTCTTTAATATTTAGTTGTTTCTTCTGGTTTCGTTCAAACATTATTTACTAATGAACTAATTGAACTTGTTCTGACATTTGCAGTTCGTGATTGTCTCTCTATCGGGATGGGGTCTACTCATCTTTGGAGGGTACAAATTCTTTACCAGGGGCAAAGGAAAGAAGGATGAGGTACTTCTGCACTTATTGTCTGTGCACTTTTTACACTTAAAACCACTTGCAATTACAGGTGATGTTAAATGAAATAATATTTGGCAGTCATGGATCGGTTTTGAGTTGTTTACAAGATTAACTTCTGAGAACAATTTACTTATGCCTCTTATTTGTGAGGAGGGAATGACACCTTAA

mRNA sequence

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGATTAACTGCTGGCAAGATCCAATGAGCCCATCTAAATGGAAGGAAGAGCATTTCGTGATTGTCTCTCTATCGGGATGGGGTCTACTCATCTTTGGAGGGTACAAATTCTTTACCAGGGGCAAAGGAAAGAAGGATGAGTCATGGATCGGTTTTGAGTTGTTTACAAGATTAACTTCTGAGAACAATTTACTTATGCCTCTTATTTGTGAGGAGGGAATGACACCTTAA

Coding sequence (CDS)

ATGGCTACCTTAGCGGCTGCTGCAGTTCGTCAAGCCAGAGCCCTAACTCGAGTCTCCTCTCCTCAGTCAACCGCCACCCTTATTCACAGGCGCGGTCTCGCTGGCGCTGCCGACCACCATGGACCACCGAAGATTAACTGCTGGCAAGATCCAATGAGCCCATCTAAATGGAAGGAAGAGCATTTCGTGATTGTCTCTCTATCGGGATGGGGTCTACTCATCTTTGGAGGGTACAAATTCTTTACCAGGGGCAAAGGAAAGAAGGATGAGTCATGGATCGGTTTTGAGTTGTTTACAAGATTAACTTCTGAGAACAATTTACTTATGCCTCTTATTTGTGAGGAGGGAATGACACCTTAA

Protein sequence

MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWIGFELFTRLTSENNLLMPLICEEGMTP
Homology
BLAST of HG10000971 vs. NCBI nr
Match: KAA0047889.1 (uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 2.8e-52
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 1   MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
           MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1   MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61  HFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWIGFELFTRLTSENNLLMPLICEEGMTP 120
           HFV+VSLSGWGLLIFGGYKFFTRGKG KDE W+ FELFT  TS NNL +P I EEGM P
Sbjct: 61  HFVLVSLSGWGLLIFGGYKFFTRGKGNKDELWVSFELFTISTSVNNLFIPFIFEEGMAP 119

BLAST of HG10000971 vs. NCBI nr
Match: XP_022140380.1 (uncharacterized protein LOC111011068 [Momordica charantia])

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPK+NCW+DPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWI 94
          HFVIVSLSGWGLL FGGYKFFTRGKGKK+E  +
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEKLV 93

BLAST of HG10000971 vs. NCBI nr
Match: XP_038900519.1 (uncharacterized protein LOC120087716 [Benincasa hispida])

HSP 1 Score: 181.4 bits (459), Expect = 4.5e-42
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHG PK+NCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGSPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLL FGGYKFFTRGKGKKDE
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKDE 90

BLAST of HG10000971 vs. NCBI nr
Match: XP_023532872.1 (uncharacterized protein LOC111794912 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 177.6 bits (449), Expect = 6.5e-41
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLI RRGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLL +GGYKFFT GKGKKDE
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDE 90

BLAST of HG10000971 vs. NCBI nr
Match: XP_008448206.1 (PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo])

HSP 1 Score: 177.2 bits (448), Expect = 8.5e-41
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDE 91
          HFV+VSLSGWG+LIFGGYKFFTRGKG KDE
Sbjct: 61 HFVLVSLSGWGVLIFGGYKFFTRGKGNKDE 90

BLAST of HG10000971 vs. ExPASy TrEMBL
Match: A0A5A7U364 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001630 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0

Query: 1   MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
           MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1   MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61  HFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWIGFELFTRLTSENNLLMPLICEEGMTP 120
           HFV+VSLSGWGLLIFGGYKFFTRGKG KDE W+ FELFT  TS NNL +P I EEGM P
Sbjct: 61  HFVLVSLSGWGLLIFGGYKFFTRGKGNKDELWVSFELFTISTSVNNLFIPFIFEEGMAP 119

BLAST of HG10000971 vs. ExPASy TrEMBL
Match: A0A6J1CEY6 (uncharacterized protein LOC111011068 OS=Momordica charantia OX=3673 GN=LOC111011068 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.7e-42
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPK+NCW+DPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKVNCWKDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWI 94
          HFVIVSLSGWGLL FGGYKFFTRGKGKK+E  +
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTRGKGKKEEKLV 93

BLAST of HG10000971 vs. ExPASy TrEMBL
Match: A0A1S3BJS2 (uncharacterized protein LOC103490467 OS=Cucumis melo OX=3656 GN=LOC103490467 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 4.1e-41
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAAVRQARAL RVSSPQSTA LIH+RGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1  MATLAAAAVRQARALARVSSPQSTANLIHKRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDE 91
          HFV+VSLSGWG+LIFGGYKFFTRGKG KDE
Sbjct: 61 HFVLVSLSGWGVLIFGGYKFFTRGKGNKDE 90

BLAST of HG10000971 vs. ExPASy TrEMBL
Match: A0A6J1I3K1 (uncharacterized protein LOC111469597 OS=Cucurbita maxima OX=3661 GN=LOC111469597 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.7e-40
Identity = 83/90 (92.22%), Postives = 85/90 (94.44%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAA AVRQARALTR SSPQSTATLI RRGLAGAADHHGPPK+NCWQDPMSPSKWKEE
Sbjct: 1  MATLAATAVRQARALTRASSPQSTATLIQRRGLAGAADHHGPPKVNCWQDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDE 91
          HFVIVSLSGWGLL +GGYKFFT GKGKKDE
Sbjct: 61 HFVIVSLSGWGLLFYGGYKFFTGGKGKKDE 90

BLAST of HG10000971 vs. ExPASy TrEMBL
Match: A0A6J1FYP0 (uncharacterized protein LOC111448907 OS=Cucurbita moschata OX=3662 GN=LOC111448907 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.6e-40
Identity = 83/93 (89.25%), Postives = 85/93 (91.40%), Query Frame = 0

Query: 1  MATLAAAAVRQARALTRVSSPQSTATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEE 60
          MATLAAAA RQARALTRVSSPQS ATLI RRGLAGAADHHGPPK+NCW DPMSPSKWKEE
Sbjct: 1  MATLAAAAARQARALTRVSSPQSAATLIQRRGLAGAADHHGPPKVNCWSDPMSPSKWKEE 60

Query: 61 HFVIVSLSGWGLLIFGGYKFFTRGKGKKDESWI 94
          HFVIVSLSGWGLL FGGYKFFT GKGKKDE  +
Sbjct: 61 HFVIVSLSGWGLLFFGGYKFFTGGKGKKDEKLV 93

BLAST of HG10000971 vs. TAIR 10
Match: AT2G20820.1 (unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-18
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 0

Query: 6  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHF 65
          A+  R+A +L ++ S +     A++  RR LAGAADHHG  K++ W+ P +P  WKEEHF
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHF 61

Query: 66 VIVSLSGWGLLIFGGYKFFTRGK 86
          V++SLSGWGLL + GYK  T GK
Sbjct: 62 VLISLSGWGLLFYSGYKLATGGK 84

BLAST of HG10000971 vs. TAIR 10
Match: AT2G20820.2 (unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 26/61 (42.62%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 6  AAAVRQARALTRVSSPQ---STATLIHRRGLAGAADHHGPPKINCWQDPMSPSKWKEEHF 64
          A+  R+A +L ++ S +     A++  RR LAGAADHHG  K++ W+ P +P  WKEEH+
Sbjct: 2  ASFARRAMSLAQIPSARISSGAASIGQRRCLAGAADHHGSTKVDFWKQPTNPGNWKEEHW 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047889.12.8e-5285.71uncharacterized protein E6C27_scaffold133G001630 [Cucumis melo var. makuwa][more]
XP_022140380.13.5e-4292.47uncharacterized protein LOC111011068 [Momordica charantia][more]
XP_038900519.14.5e-4296.67uncharacterized protein LOC120087716 [Benincasa hispida][more]
XP_023532872.16.5e-4194.44uncharacterized protein LOC111794912 [Cucurbita pepo subsp. pepo][more]
XP_008448206.18.5e-4192.22PREDICTED: uncharacterized protein LOC103490467 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3641.4e-5285.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A6J1CEY61.7e-4292.47uncharacterized protein LOC111011068 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A1S3BJS24.1e-4192.22uncharacterized protein LOC103490467 OS=Cucumis melo OX=3656 GN=LOC103490467 PE=... [more]
A0A6J1I3K12.7e-4092.22uncharacterized protein LOC111469597 OS=Cucurbita maxima OX=3661 GN=LOC111469597... [more]
A0A6J1FYP04.6e-4089.25uncharacterized protein LOC111448907 OS=Cucurbita moschata OX=3662 GN=LOC1114489... [more]
Match NameE-valueIdentityDescription
AT2G20820.12.2e-1850.60unknown protein; Has 44 Blast hits to 44 proteins in 13 species: Archae - 0; Bac... [more]
AT2G20820.22.7e-0842.62unknown protein; Has 36 Blast hits to 36 proteins in 10 species: Archae - 0; Bac... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35292EXPRESSED PROTEINcoord: 1..92
NoneNo IPR availablePANTHERPTHR35292:SF8SUBFAMILY NOT NAMEDcoord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000971.1HG10000971.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane