HG10000877 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000877
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionDNA-binding storekeeper protein-related transcriptional regulator
LocationChr09: 10637069 .. 10637542 (-)
RNA-Seq ExpressionHG10000877
SyntenyHG10000877
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATACACAGGCAAAAACGGGAGTTATTCAAAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCGAATTCTCAATTGTCAGATAAAGTGTATAGGTTGAGGAAGAAATTCTTGAAGGATAAATGTAAAATGGAATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTCAAATTTTTGTTGAAAATATCAAGCTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

mRNA sequence

ATGAAATACACAGGCAAAAACGGGAGTTATTCAAAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCGAATTCTCAATTGTCAGATAAAGTGTATAGGTTGAGGAAGAAATTCTTGAAGGATAAATGTAAAATGGAATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTCAAATTTTTGTTGAAAATATCAAGCTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Coding sequence (CDS)

ATGAAATACACAGGCAAAAACGGGAGTTATTCAAAGGAGTTCTACCATTTTGTGAAGGGGAAGTTGAGTAGTGAGGTATCGAATTCTCAATTGTCAGATAAAGTGTATAGGTTGAGGAAGAAATTCTTGAAGGATAAATGTAAAATGGAATTAGATGGAAAAATGAGTAAATTTTCAGATAGTAATAAGGAGAAGTTGTTTGAGTTATGGAGCAACATTTGGGGCGACCAAAACCCTAAAACTACTGGACCCCCATATTCTTCAATAATTCAATGGAAGCCTGAAGAAGTTGATCGGTTCTATGAGAAAAGGTTTCAAATTTTTGTTGAAAATATCAAGCTTGACATCACCTACATTCCACCTGATGTTTTGCAACACATTAGAAAAGAATGGGAAGATGTGAGGAGTGCTAGGAATGATTATCAGTTCAAGAATGCCAAGTTACTTGTGGAAATCTCTGATATTAAGATGTAG

Protein sequence

MKYTGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDSNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIPPDVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIKM
Homology
BLAST of HG10000877 vs. NCBI nr
Match: XP_038877618.1 (STOREKEEPER protein-like [Benincasa hispida])

HSP 1 Score: 196.8 bits (499), Expect = 1.4e-46
Identity = 108/165 (65.45%), Postives = 127/165 (76.97%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKM-SKFSD 61
           ++ GKNG+YSK FYHFVKGKLS EVSNSQLS KVYRLRK+F+K+K     +  M  KF D
Sbjct: 29  EFAGKNGNYSKAFYHFVKGKLSGEVSNSQLSTKVYRLRKRFMKNKRNDNNNNNMREKFPD 88

Query: 62  SNKEKLFELWSNIWGD--QNPKTT----GPPYSS---IIQWKPEEVDRFYEKRFQIFVEN 121
              EK+FEL  NIWGD  +NPK+T    GP  SS   IIQWKPEEV+RFYEKRF+IF+EN
Sbjct: 89  ---EKVFELSRNIWGDDQENPKSTIGGGGPSSSSSINIIQWKPEEVERFYEKRFKIFLEN 148

Query: 122 IKLDITYIPPDVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIK 157
           +KLD+T IP  VL+ +RKEWEDVR ARNDY+ KNA LL EISDI+
Sbjct: 149 MKLDVTSIPTHVLEDVRKEWEDVRRARNDYELKNADLLEEISDIR 190

BLAST of HG10000877 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 2.2e-36
Identity = 84/155 (54.19%), Postives = 115/155 (74.19%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDS 61
           ++ GKNGSYSK+FYHFVK KLS +VSNSQLSDKVYRLRK+FLKD+CK ++  K SK   +
Sbjct: 78  EFAGKNGSYSKDFYHFVKNKLSVDVSNSQLSDKVYRLRKRFLKDECKGKIRMKFSK--GN 137

Query: 62  NKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIPP 121
             EKL+E+ +NIWG  +   T    S   QWK E V+R  E+ F+  +EN+K+DI+ IPP
Sbjct: 138 QLEKLYEMSNNIWGSNS--NTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP 197

Query: 122 DVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIK 157
           +VL  IRK+WE ++ A+++Y+ KNA LL++IS I+
Sbjct: 198 NVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIR 228

BLAST of HG10000877 vs. NCBI nr
Match: KAG6607617.1 (hypothetical protein SDJN03_00959, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-11
Identity = 33/65 (50.77%), Postives = 54/65 (83.08%), Query Frame = 0

Query: 92  WKPEEVDRFYEKRFQIFVENIKLDITYIPPDVLQHIRKEWEDVRSARNDYQFKNAKLLVE 151
           WK E V ++Y K F+++ +++K+D++ I P++LQ +RK+WED+ +A+++YQ KNAKLLVE
Sbjct: 44  WKSEAVHKWYGKMFRMYFKHLKMDMSCIQPNLLQTLRKDWEDMLTAKHEYQLKNAKLLVE 103

Query: 152 ISDIK 157
           ISDI+
Sbjct: 104 ISDIR 108

BLAST of HG10000877 vs. NCBI nr
Match: XP_023521141.1 (probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 3.2e-11
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSD 61
           ++ G N SYSK FY FVK +L +++VS +Q+S+K+ R +K++LK++C+ +++    KFS+
Sbjct: 69  QFGGSNASYSKAFYEFVKKRLNNNQVSMNQMSNKIDRFKKEYLKNECRKKVND--LKFSE 128

Query: 62  SNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIP 121
            ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI  + 
Sbjct: 129 YHEFEVFMLSRRIWGGKRSKSNGGRMK-------------YAKGFSEYLEEMDIDIDCLT 185

Query: 122 PDVLQHIRKEWE 133
           P  L+H +KEWE
Sbjct: 189 PSCLEHFKKEWE 185

BLAST of HG10000877 vs. NCBI nr
Match: KAG6585873.1 (putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-10
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSD 61
           ++ G N SYSK FY FVK +L +++VS  QLS+K+ R +K++LK++C+ + +    KFS+
Sbjct: 69  QFGGSNASYSKAFYEFVKKRLNNNQVSMHQLSNKIDRFKKEYLKNECRKKEND--LKFSE 128

Query: 62  SNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIP 121
            ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI  + 
Sbjct: 129 YHEFEVFMLSRRIWGGKRSKSNGGRMK-------------YAKGFLEYLEEMDIDIDCLT 185

Query: 122 PDVLQHIRKEWE 133
           P  L+H +KEWE
Sbjct: 189 PSCLEHFKKEWE 185

BLAST of HG10000877 vs. ExPASy Swiss-Prot
Match: Q94IK2 (STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.1e-05
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0

Query: 14  FYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDSNKEKLFELWSNI 73
           F+ F++GKL +EVS SQ+SDKV RL+KKFL +      DG+   F       +FE    I
Sbjct: 190 FHEFIRGKLQAEVSKSQISDKVRRLKKKFLTN----VKDGEEPVFKKGQDFLIFEHSKRI 247

Query: 74  WG 76
           WG
Sbjct: 250 WG 247

BLAST of HG10000877 vs. ExPASy Swiss-Prot
Match: O23063 (Probable transcription factor At4g00390 OS=Arabidopsis thaliana OX=3702 GN=At4g00390 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.3e-04
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 4   TGKNGSY-SKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDSN 63
           TGK+ S  +  FY F K  +S EVS SQ SDKV  LRKK+   + K E      +F  ++
Sbjct: 180 TGKSPSADTNAFYEFQKKSISFEVSKSQFSDKVRSLRKKYRAKEGKDE-----PRFVKAH 239

Query: 64  KEKLFELWSNIWG------DQNPKTTGPPYSSIIQWKPEEVD 99
            +K FEL   IWG      D N K+ G    S  + K E++D
Sbjct: 240 DKKAFELSKFIWGPKGIALDSNAKSNGVSKKSASKTK-EKLD 275

BLAST of HG10000877 vs. ExPASy TrEMBL
Match: A0A6J1DXL5 (probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111025442 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 84/155 (54.19%), Postives = 115/155 (74.19%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDS 61
           ++ GKNGSYSK+FYHFVK KLS +VSNSQLSDKVYRLRK+FLKD+CK ++  K SK   +
Sbjct: 78  EFAGKNGSYSKDFYHFVKNKLSVDVSNSQLSDKVYRLRKRFLKDECKGKIRMKFSK--GN 137

Query: 62  NKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIPP 121
             EKL+E+ +NIWG  +   T    S   QWK E V+R  E+ F+  +EN+K+DI+ IPP
Sbjct: 138 QLEKLYEMSNNIWGSNS--NTQNTQSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPP 197

Query: 122 DVLQHIRKEWEDVRSARNDYQFKNAKLLVEISDIK 157
           +VL  IRK+WE ++ A+++Y+ KNA LL++IS I+
Sbjct: 198 NVLXDIRKDWEQMKMAQDEYELKNANLLLQISHIR 228

BLAST of HG10000877 vs. ExPASy TrEMBL
Match: A0A0A0L833 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G498910 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 81/140 (57.86%), Postives = 96/140 (68.57%), Query Frame = 0

Query: 18  VKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELD-GKMSKFSDSNKEKLFELWSNIWGD 77
           ++GKLS EVSNSQLSDKVYRL+K+F+  K     D  KM  FSDSN +KLFEL SNIWGD
Sbjct: 49  LEGKLSVEVSNSQLSDKVYRLKKRFILMKANKSCDNNKMRTFSDSNYKKLFELSSNIWGD 108

Query: 78  -QNPKTTGPPYSSIIQWKPEEVDRFY--EKRFQIFVENIKLDITYIPPDVLQHIRKEWED 137
            +NPK +  P              FY  EK FQ+ +E +K+DIT+IPP  LQ+IRKEWED
Sbjct: 109 EENPKLSEDP----------SARGFYNDEKVFQMALEKLKVDITFIPPHDLQNIRKEWED 168

Query: 138 VRSARNDYQFKNAKLLVEIS 154
           V SARN Y+ K AKLL EIS
Sbjct: 169 VMSARNGYELKYAKLLEEIS 178

BLAST of HG10000877 vs. ExPASy TrEMBL
Match: A0A6J1GK86 (probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC111454655 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 7.7e-11
Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKL-SSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSD 61
           ++ G N SYSK FY FVK +L +++VS  QLS+K+ R +K++LK++C+ + +    KFS+
Sbjct: 69  QFGGSNASYSKAFYEFVKKRLNNNQVSMHQLSNKIDRFKKEYLKNECRKKEND--LKFSE 128

Query: 62  SNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIP 121
            ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI  + 
Sbjct: 129 YHEFEVFMLSRRIWGGKRSKSNGGRMK-------------YAKGFLEYLEEMDIDIDCLT 185

Query: 122 PDVLQHIRKEWE 133
           P  L+H +KEWE
Sbjct: 189 PSCLEHFKKEWE 185

BLAST of HG10000877 vs. ExPASy TrEMBL
Match: A0A6J1I882 (probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471848 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-10
Identity = 46/132 (34.85%), Postives = 75/132 (56.82%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKLS-SEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSD 61
           ++ G N SYSK FY FVK +LS ++VS  Q S+K+ R +K++LK++C+ + +    KFS+
Sbjct: 69  EFGGSNASYSKAFYEFVKKRLSNNQVSMHQTSNKIDRFKKEYLKNECRKKEND--LKFSE 128

Query: 62  SNKEKLFELWSNIWGDQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKLDITYIP 121
            ++ ++F L   IWG +  K+ G                 Y K F  ++E + +DI  + 
Sbjct: 129 YHEFEVFMLSKRIWGARRSKSNGGGMK-------------YAKGFLEYLEEMDIDIDCLT 185

Query: 122 PDVLQHIRKEWE 133
           P  L+H +KEWE
Sbjct: 189 PSCLEHFKKEWE 185

BLAST of HG10000877 vs. ExPASy TrEMBL
Match: A0A6J1E125 (probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111025438 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 42/138 (30.43%), Postives = 75/138 (54.35%), Query Frame = 0

Query: 2   KYTGKNGSYSKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLK-DKCK-MELDGKMSKFS 61
           +++GKN +YS+EFY FVK KL  +VS  Q+ +K+  LR+K+L+ D+C  ++  G  S+  
Sbjct: 72  EFSGKNATYSEEFYEFVKKKLGGQVSMHQMRNKIRGLRRKYLENDECNGLKFCGSGSQ-- 131

Query: 62  DSNKEKLFELWSNIWG-----DQNPKTTGPPYSSIIQWKPEEVDRFYEKRFQIFVENIKL 121
             ++ K+      IWG     ++N    G    S+ Q         YE+ F   +E +++
Sbjct: 132 -QHQRKVLAWSKRIWGAAENENENKNKNGGGTRSVEQ---------YERGFVESLEEMEI 191

Query: 122 DITYIPPDVLQHIRKEWE 133
           ++  + P  L+ + K+WE
Sbjct: 192 EMDCLKPSCLEFLYKDWE 197

BLAST of HG10000877 vs. TAIR 10
Match: AT4G00390.1 (DNA-binding storekeeper protein-related transcriptional regulator )

HSP 1 Score: 47.0 bits (110), Expect = 1.6e-05
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 0

Query: 4   TGKNGSY-SKEFYHFVKGKLSSEVSNSQLSDKVYRLRKKFLKDKCKMELDGKMSKFSDSN 63
           TGK+ S  +  FY F K  +S EVS SQ SDKV  LRKK+   + K E      +F  ++
Sbjct: 180 TGKSPSADTNAFYEFQKKSISFEVSKSQFSDKVRSLRKKYRAKEGKDE-----PRFVKAH 239

Query: 64  KEKLFELWSNIWG------DQNPKTTGPPYSSIIQWKPEEVD 99
            +K FEL   IWG      D N K+ G    S  + K E++D
Sbjct: 240 DKKAFELSKFIWGPKGIALDSNAKSNGVSKKSASKTK-EKLD 275

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877618.11.4e-4665.45STOREKEEPER protein-like [Benincasa hispida][more]
XP_022158998.12.2e-3654.19probable transcription factor At4g01260 [Momordica charantia][more]
KAG6607617.13.2e-1150.77hypothetical protein SDJN03_00959, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023521141.13.2e-1134.09probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo][more]
KAG6585873.11.6e-1034.85putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia][more]
Match NameE-valueIdentityDescription
Q94IK26.1e-0545.16STOREKEEPER protein OS=Solanum tuberosum OX=4113 GN=STK PE=2 SV=1[more]
O230632.3e-0439.22Probable transcription factor At4g00390 OS=Arabidopsis thaliana OX=3702 GN=At4g0... [more]
Match NameE-valueIdentityDescription
A0A6J1DXL51.1e-3654.19probable transcription factor At4g01260 OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A0A0L8331.8e-2857.86Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G498910 PE=3 SV=1[more]
A0A6J1GK867.7e-1134.85probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1I8821.3e-1034.85probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471... [more]
A0A6J1E1252.6e-0630.43probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111... [more]
Match NameE-valueIdentityDescription
AT4G00390.11.6e-0539.22DNA-binding storekeeper protein-related transcriptional regulator [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007592GLABROUS1 enhancer-binding protein familyPFAMPF04504DUF573coord: 9..75
e-value: 4.9E-14
score: 52.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000877.1HG10000877.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated