HG10000866 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000866
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Ribosome-binding factor PSRP1
Location	Chr09: 10301903 .. 10307521 (-)
RNA-Seq Expression	HG10000866
Synteny	HG10000866

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGGTATTTTAACTTCATCTTTGCTCTTGTTTCTCACGCAATGCAAATTCTTATTTCTTTTATGTGTTTCACAAAACCTCTACCTGTTTGATGTCCCATTCTCTATGCTATTCTAATCACCATATCCCTTCTCTCAAACACTACCCTTGTAATTGTCAACTTCTCCATTTCCACTAAATGTAATTTACAAACCCTAATTTTAATTTCTCCAAGTAAGTCTGCATGCTAATTTCTGCCTCATTTCTTCAAATATTTTCCATATCAACATTCGTGTCCCTTAGAAATTACCTACTAACACTTATAAACAAGCTTCCTTAGTGGTAGAAAGTCTGTTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAATGTCTGTTTCTAGAAATTATCAGAGTTTCAGTTACCCAATTTATTGTATCCCCATGTTTCATATTTCAAACCTTGAGTGGATTTATTTTTCATTATGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTATTCTGTTGCTCCTTTATTTTAAAATTTTTTCTTATGAATTGAACCCTCATTCTTTTCCAACAACATTTGTGTTTATATAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCCTTCAACCTTTGGGTGTTTACTTTGAGTTCATTTCGCTGTAGATATTAATCATTTAAGGTGATATTAAGTTATAAAAACTCATGCATGCCATGCCTATTAATTTTTTTCTACATATCAAACTTACTGTGACTTCAGAATTACTAAACCACAACTTTTCTCACTTAGTTTTTGAAATCGTTGTTCTCTATGAAGAAAAAAAAACACATCAATTTCGTAGTTAATTTTCTTGCTCCTTTCCATTGATTGGCATTGGGAAGATTCTAGAGGCAGTACTCAGACTAGTTGAACCATGTGCAATAAGTTACTCCTTGCATAGGAGGCTAGAATGGAAAGAAGTGTATTCTCAATCTTGATTTCCCCTTATGATGAGCTATTTTCAACTGAATTCAGCCCAAAGTCGTAGCATTTTTATTTACATTATATAATTAATTAGTCCGTTCTTTTATTTCACAACATGATAGTTTAGATGAACATGAAAACATCGGAAGTTGGACCTTACAGCTGTAAGATAGAGGGCCTCCATAGTTTGTACAAGACTGTTATTTGTTATTTCTCACTGAGCTAACACTGTGTTCGAGTTATTTTATTGATCCTTTGCTCTTAATGAGTGTTTTGTGGTCCATTCGAATGTACTTGATCGTTCTCTGTTATAGCTTTTGATTCCCTAGCTTATTTTGTTGACATTCAATGTTGGTATCTCATTACTCATTTTTATCTTGATTTTAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTTATTATAATGATAATCTTGTTTTGTTGGGATTCTGTGCTGTTTATATCGTAGCTTATTGTCTTCATCCTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGATTGGACTTCACGGAGGAAGTTTCATGTTCAAGATATCTTACCACTGCTACATTCGCTTGAAACTGCAAAACTTCGACTGTAACATGCATCTGAAGGCCTCTCTTGCATAGAGTATATAGATTTAGATTTAAGGTTATTTGGTGATGAAGACAATTTTGGAACAAGAAATGAGTAAAAAGTGAAATGAGATGTAAAATATTCTAATGTATGAATGATCCAGCTTGCAGGGGTGTTACCATGCAAATATACTATTTTCTTTTGTAAGAATGATTTCTTTTCCCCTATCATACTCATGACAAGTTGTATTTGGTACTTAATCTTAATATATCTTTCATCCTTTCATGCTCCATGCTAAAAATAGCTTGCTTCCTAGAAATTAGCACTTTGGACTAATTCAAATAATTAAAATAGACTTGCACTTAAGTTAACTAACAGGTACAACCTAACCCTCTATTTATAGGGGACTGGGTTAACCTACCAACAACTAATTAATTATTTCAAATTAAAATTACAAAAATAGTAACCAACTAGTATGACTCTAATTGTTCTAATTCCCTGGAGTGACCATTTTAGGATCCTTGAGTGCCTTTCAAAGATCCCGACTTTATGTGAGTGAAGATATATTTTGTAAGATACTTTCAATTGCTTTCACCACTTGGCTCATCGTGGGGCGATTTATAGTTGATTCTTCAACACATTTTATTGCCAACTCCAAAAACCTTCCAAACTCAATTAGATTTGTCATCTCATTTATAATGGCTGCATCTATTATATGCATCAATCCATAATATGCTTTGTCGCTCTTGTTCATTAGTCGAGCCACTTCACGAACTAAATATGTCCCCTTCTCAATTGGCCGCTTAGAAGTAATCAATTCAAGCATAACAACTCCAAAGCTATACACATCACTCTTCTCAGTTAATCGTTGCGTTGTGTAATATTCAGGATCTAAATACCCCTGCAAAATGAATGCTCTATAAGAAAAAAAAAATACCTACATAACATCACCATAGGTGAACACTTAAGACATTCTATATAGATGACTTTACATCAAGAATGACATATATTGGATGATGAGAAGCACTTACCCACGTGCCTTTAACTCCAGTAGAAATATGTCCCTTTTCATGGTCAAATACAAGCTTGGACAGGCCAAAGTCTGCAACCTTCGCATTCAATTATTCATCTAAGAGAATATTGGAGGACTTAATATCTCTATGGATTATTGGAGGATTTGCGTAAGGTATCTAGCATTCGCTGATCCAGGTAAGCTACCGTCCTTCTTGCAGAGCACAAGTGTCCTATCTTTGCGTTCTCGAGTTTTTTTTCCAATCAAGATGGATACAACCACTCCCTAAATAGAAGTTACGCCTATTAATTATTTACCATTTGATTTCAAATTTAAAAAATTATATGGACGAATTCCTGGTTTGAATTACATTATGCCAACAGTTTTTAGACAAGTGTAGTCATTTAATCAAAAAATCAATACTCATTCATGTATAAAGAGAAAGAGTAAAAGCAAGGTTAAGTTATCAAAAATACCCCTTTAAACTATGGGTTTCGTTTCAAGAATACCCCTAAACATTGAAAAGTTTCATTCTAACCTTTGAAGTTTGAAATTTGTTTTAAAACAACCCTGCGTTTTGTCATTAAATTCATAGGTGAAAAAGTTGTGATTGCTTATGTGAATAAATCTAAACACGTGCATGAAAAAAAAAAAAAAAAAAAAAAAAGACACATGGCATCTGTGAACCATATATGTTGTAGTCTTCTTCCCTTCAACCCCATGTTTCTTTTTTTCTTTTTCTTTTTTTTGTTCTTTTGTTTATGATTTTTCTCCTAACTCTAACCTCCAAATTTACTTTCCGTACATATTTAGATTTGTTCACCTCAACAATATATGAGCAGACACAAACTTTTTCAACCATGCATTTAATGACAAAAGCCTAAAGGGTTGTTTTGAAATAAGCCTCAAATTTTGAGGGTTACAATGAAAATTTTTAAAGTTTAAAAATATAAATGAAACTAGTTTAGGGATATTTTTGATAATTTAACGTAATAAAATCTATGAAAACCTAAAAGTGGTTGGATTAAAATGCCAATGTATCTTATTTAGAGATTTCACCTCTAATTGCTTTGCCACCGACTCCAAAGCAAAACTAACTTTCCCGGGAGTGTGTTTAAAAAAGAAAAAAGAATAATGTGGATAAAAAAGGATAAATATTATATGTATCCATTTTTGTACTAAAGTACAAAACTGAAAGAATATGTCCCATGGAAACCAGGTAGATGTTTGAATTTCTAGCCTTGCTAATTGTGTAAATGATTAGTAAATATTAGTTAACAATATTTAGTCTTCATTGTCTTTATTTTTTTTCCTTATATATTGTAATGGGTCTTTCTCCTATATGAAAAGATCTAGGTTGCACATATTTATAAACATAAGACTAGTATTCTCTAAAATTTAAGATAGTATTAGAGCAAATAAATCCTAGTTGTCATCTCTAAAGTCCTAAAAACTTCCACACTTGAAATAAATCCTAGCCACACCATTCTTGATTGGTGTATCCTACTTTTAATCCTAGCCTTATTTGACGAGATTTTTATACGGATGATTCAATCCCAGCAGCGTTAATGTGGGATGACCCACTCCTAAAAAATGAATGAAAACTAACATTTTGCTTACGTCATAGAACACTTAACTGCCTGGAACTCAGTATTGCATTAGAGACGTCTCACCCATCGCTAAATGATCATGGCCCTAACTTGATGTTCATGTCAATTGTGATTTTTATTTGAAATTATAAGTTCACCGATCGGGCTAGCAAGTGACCTCCCACCGCGATATTATAACGTAATCCTGCCAAGATTTTTTAAAAATAAGAAGAGTACTTCTAATTCCAAGACAAACAAGTTGAAGAGGAATCTTCTAACGATCATGTGCCCATTGCGGCTTTGAGTAAGAGTAAGAAACCAACTACTGTTCTGAAATCCCTTAAGAAAATAAAATTTGAGATAAGGCTTGTGTCTGGTGAAAAGAAGAAGAAGGTTTCCTCTAAGCTGAAGAAACAAAGTGATCCTGATGAGTGTGTTGAATCCAATCAGGACTATGATGGCACATCTGGCTCTGAAGATGATGCCTCTATTCAAGATCCCAAGAGTTCTTCTCATTTAATTAGTAGGAAGGTACCTCCAAATGTTGTATCTGTGTCACTAGATGAAATCTCTTTTCATTCAAAAGAGAGTGTAGGACGTTAG

mRNA sequence

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGACAAACAAGTTGAAGAGGAATCTTCTAACGATCATGTGCCCATTGCGGCTTTGAGTAAGAGTAAGAAACCAACTACTGTTCTGAAATCCCTTAAGAAAATAAAATTTGAGATAAGGCTTGTGTCTGGTGAAAAGAAGAAGAAGGTTTCCTCTAAGCTGAAGAAACAAAGTGATCCTGATGAGTGTGTTGAATCCAATCAGGACTATGATGGCACATCTGGCTCTGAAGATGATGCCTCTATTCAAGATCCCAAGAGTTCTTCTCATTTAATTAGTAGGAAGGTACCTCCAAATGTTGTATCTGTGTCACTAGATGAAATCTCTTTTCATTCAAAAGAGAGTGTAGGACGTTAG

Coding sequence (CDS)

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGACAAACAAGTTGAAGAGGAATCTTCTAACGATCATGTGCCCATTGCGGCTTTGAGTAAGAGTAAGAAACCAACTACTGTTCTGAAATCCCTTAAGAAAATAAAATTTGAGATAAGGCTTGTGTCTGGTGAAAAGAAGAAGAAGGTTTCCTCTAAGCTGAAGAAACAAAGTGATCCTGATGAGTGTGTTGAATCCAATCAGGACTATGATGGCACATCTGGCTCTGAAGATGATGCCTCTATTCAAGATCCCAAGAGTTCTTCTCATTTAATTAGTAGGAAGGTACCTCCAAATGTTGTATCTGTGTCACTAGATGAAATCTCTTTTCATTCAAAAGAGAGTGTAGGACGTTAG

Protein sequence

MVATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETDKQVEEESSNDHVPIAALSKSKKPTTVLKSLKKIKFEIRLVSGEKKKKVSSKLKKQSDPDECVESNQDYDGTSGSEDDASIQDPKSSSHLISRKVPPNVVSVSLDEISFHSKESVGR

Homology

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BLAST of HG10000866 vs. NCBI nr
Match: XP_004147328.1 (ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hypothetical protein Csa_016934 [Cucumis sativus])

HSP 1 Score: 471.5 bits (1212), Expect = 7.3e-129
Identity = 252/279 (90.32%), Postives = 261/279 (93.55%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSLSPP              SSST+S+FP+SFSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLSPPF------------HSSSTVSYFPASFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 267

[Close]

BLAST of HG10000866 vs. NCBI nr
Match: XP_008460813.1 (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023.1 ribosome-binding factor PSRP1 [Cucumis melo var. makuwa])

HSP 1 Score: 459.9 bits (1182), Expect = 2.2e-125
Identity = 248/279 (88.89%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 267

[Close]

BLAST of HG10000866 vs. NCBI nr
Match: XP_038900446.1 (ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 447.2 bits (1149), Expect = 1.5e-121
Identity = 247/281 (87.90%), Postives = 256/281 (91.10%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQAL- 61
           +A LTSSM  ++L DHSL           SSSSSSSSSTISFFP+SFSLHFSALKV AL 
Sbjct: 1   MAALTSSMHTSLLPDHSL-----------SSSSSSSSSTISFFPASFSLHFSALKVHALS 60

Query: 62  -SSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVK 121
            SS  SAFFNSCKSFRT ETASRNRH SNSF++RMSWDGPLSSVKLIVQ KNLELTEAVK
Sbjct: 61  CSSTASAFFNSCKSFRTFETASRNRHASNSFNVRMSWDGPLSSVKLIVQAKNLELTEAVK 120

Query: 122 KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 181
           KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE
Sbjct: 121 KHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAE 180

Query: 182 TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGG 241
           TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDE+EEVF+ED G
Sbjct: 181 TVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEDEEVFEED-G 240

Query: 242 EVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           EVIDEIVR KYFDMPPLT+EEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 EVIDEIVRRKYFDMPPLTIEEAIEQLKNIDHDFYGFRNEET 269

[Close]

BLAST of HG10000866 vs. NCBI nr
Match: KAG7014676.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 429.9 bits (1104), Expect = 2.4e-116
Identity = 241/284 (84.86%), Postives = 253/284 (89.08%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SFSL    + + LK 
Sbjct: 1   MAALTSSMQTNLLSAHSLTP------SSSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+R+PAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIRDPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 278

[Close]

BLAST of HG10000866 vs. NCBI nr
Match: KAG6576623.1 (Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 429.5 bits (1103), Expect = 3.2e-116
Identity = 241/284 (84.86%), Postives = 252/284 (88.73%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSF----SLHFSALKV 61
           +A LTSSMQ N+LS HSL+P      SSSSSSSSSSSST+S FP+SF    S + + LK 
Sbjct: 1   MAALTSSMQTNLLSTHSLTP------SSSSSSSSSSSSTVSTFPTSFFLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 278

[Close]

BLAST of HG10000866 vs. ExPASy Swiss-Prot
Match: P19954 (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 2.1e-70
Identity = 154/271 (56.83%), Postives = 196/271 (72.32%), Query Frame = 0


Query: 18  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTI 77
           +++P L++S S+S + SS+ ++                    LSS  S F NSC     +
Sbjct: 10  NMNPNLTNSLSNSINLSSTPTN--------------------LSSLRSTFTNSCSLGLNV 69

Query: 78  ETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLV 137
              S     +    + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V KHSHLV
Sbjct: 70  AVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLV 129

Query: 138 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 197
           REVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLR
Sbjct: 130 REVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLR 189

Query: 198 KIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEE--EEV------FQEDGGEVIDEIVRTK 257
           KIK+K SD GRHMKGF+RSKVR+P P+ +  EE  EEV         +  + I+E+VRTK
Sbjct: 190 KIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTK 249

Query: 258 YFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           YFDMPPLT+ EA+EQL+N+DHDFY FRNEET
Sbjct: 250 YFDMPPLTITEAVEQLENVDHDFYAFRNEET 260

[Close]

BLAST of HG10000866 vs. ExPASy Swiss-Prot
Match: P74518 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=hpf PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.3e-27
Identity = 76/183 (41.53%), Postives = 116/183 (63.39%), Query Frame = 0


Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 162
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 163 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVR 222
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  +       S++ 
Sbjct: 61  AEVTVYA-NGTVIRAQEGSENLYASIDLVADKIARQLRKYKERIQD--KQHGNVKTSEIV 120

Query: 223 EPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 282
           E  P+     EE +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++
Sbjct: 121 EDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKD 170

[Close]

BLAST of HG10000866 vs. ExPASy Swiss-Prot
Match: P47908 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=hpf PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 3.9e-24
Identity = 70/179 (39.11%), Postives = 109/179 (60.89%), Query Frame = 0


Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+  +  H+    + K  E  
Sbjct: 61  TVYA-NGTVIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHV----QEKTSEVL 120

Query: 223 PIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETD 282
           P   +   + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T+
Sbjct: 121 P--EDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 170

[Close]

BLAST of HG10000866 vs. ExPASy Swiss-Prot
Match: Q9RVE7 (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=hpf PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.6e-14
Identity = 56/174 (32.18%), Postives = 98/174 (56.32%), Query Frame = 0


Query: 107 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 166
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 167 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSK---VREPAP 226
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK     +   +  PA 
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGRPEPLPGPAE 125

Query: 227 IVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 278
             V  +      +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++
Sbjct: 126 AEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQD 169

[Close]

BLAST of HG10000866 vs. ExPASy Swiss-Prot
Match: Q49VV1 (Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=hpf PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-13
Identity = 56/181 (30.94%), Postives = 103/181 (56.91%), Query Frame = 0


Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           ++  + G+NL +T+A++ ++EEK+GK ++++ + V      + V+  +        + EV
Sbjct: 2   IRFEIHGENLTITDAIRNYIEEKIGK-LERYFNDVPNATAHVKVKTYQ----NSATKIEV 61

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T+  KK   +RAEE  + +YA IDL+++ ++R++RK K + + R R+ +G   +    P 
Sbjct: 62  TIPLKK-VTLRAEERNDDLYAGIDLINNKLERQVRKYKTRVNRRNRN-RGEQEAFASLP- 121

Query: 223 PIVVEDEEEEVFQEDGGEVID--EIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 282
               E++E    Q D  E  +  EI+R K F + P+  EEA+ Q+  + HDF+ F + ET
Sbjct: 122 ----EEKEAVEIQNDENEADNEIEIIRAKNFSLKPMDSEEAVLQMDLLGHDFFIFTDRET 170

[Close]

BLAST of HG10000866 vs. ExPASy TrEMBL
Match: A0A5D3BQR1 (Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00050 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 1.1e-125
Identity = 248/279 (88.89%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 267

[Close]

BLAST of HG10000866 vs. ExPASy TrEMBL
Match: A0A1S3CCT7 (ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103499579 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 1.1e-125
Identity = 248/279 (88.89%), Postives = 257/279 (92.11%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEVFQEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 267

[Close]

BLAST of HG10000866 vs. ExPASy TrEMBL
Match: A0A6J1E3S3 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111430564 PE=3 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 1.3e-115
Identity = 238/284 (83.80%), Postives = 249/284 (87.68%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +A LTSSMQ N+LS HSL+P          SSSSSSSST+S FP+SFSL    + + LK 
Sbjct: 1   MAALTSSMQTNLLSAHSLTP----------SSSSSSSSTVSTFPTSFSLPTSTNSAVLKT 60

Query: 62  QALSSNTSAFFNSCK-SFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTE 121
            ALSS+ SAFFNSC   FRTI  A R RH + SFSIRMSWDGPLSSVKLIVQGKNLELTE
Sbjct: 61  HALSSHASAFFNSCNHCFRTIVVAPRKRHATRSFSIRMSWDGPLSSVKLIVQGKNLELTE 120

Query: 122 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 181
           AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE
Sbjct: 121 AVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEE 180

Query: 182 DAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQE 241
           DAETVYASIDLVSSI+QRKLRKIKEKDSD GRHMKGFDRSK+REPAPIVVEDEEEEV QE
Sbjct: 181 DAETVYASIDLVSSIMQRKLRKIKEKDSDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQE 240

Query: 242 DGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           DGGE IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 DGGEAIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 274

[Close]

BLAST of HG10000866 vs. ExPASy TrEMBL
Match: A0A6J1J523 (ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482691 PE=3 SV=1)

HSP 1 Score: 414.8 bits (1065), Expect = 3.9e-112
Identity = 227/257 (88.33%), Postives = 236/257 (91.83%), Query Frame = 0


Query: 29  SSSSSSSSSSSTISFFPSSFSL----HFSALKVQALSSNTSAFFNSCK-SFRTIETASRN 88
           SSSSSSSSSSST+S FP+SFSL    + + LK+ ALSS+ SAFFNSC   FRTI  A R 
Sbjct: 24  SSSSSSSSSSSTVSTFPTSFSLPTSTNSAVLKIHALSSHASAFFNSCNHCFRTIVIAPRK 83

Query: 89  RHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 148
           RH + SFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR
Sbjct: 84  RHATRSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVR 143

Query: 149 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKD 208
           LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSI+QRKLRKIKEKD
Sbjct: 144 LSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIMQRKLRKIKEKD 203

Query: 209 SDRGRHMKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIE 268
           SD GRHMKGFDRSK+REPAPIVVEDEEEEV QEDGGE IDEIVRTKYFDMPPLTVEEAIE
Sbjct: 204 SDHGRHMKGFDRSKIREPAPIVVEDEEEEVSQEDGGEAIDEIVRTKYFDMPPLTVEEAIE 263

Query: 269 QLKNIDHDFYGFRNEET 281
           QLKNIDHDFYGFRNEET
Sbjct: 264 QLKNIDHDFYGFRNEET 280

[Close]

BLAST of HG10000866 vs. ExPASy TrEMBL
Match: A0A6J1CJG5 (ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011561 PE=3 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 7.4e-111
Identity = 231/285 (81.05%), Postives = 241/285 (84.56%), Query Frame = 0


Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSL----HFSALKV 61
           +ATLTSSM  N+L                  S+ SSSST S FP+SFSL    + SALK+
Sbjct: 1   MATLTSSMHTNLL------------------SAPSSSSTFSTFPASFSLLTSTNSSALKI 60

Query: 62  QALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEA 121
             LSS+TS FFNSC  F TI+ A RNRH +NSF+IRMSWDGPLSSVKLIVQGKNLELTEA
Sbjct: 61  HPLSSHTSPFFNSCNCFTTIQIAPRNRHAANSFTIRMSWDGPLSSVKLIVQGKNLELTEA 120

Query: 122 VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEED 181
           VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR EED
Sbjct: 121 VKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRGEED 180

Query: 182 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVED--EEEEVFQ 241
           AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDR KVREPAPIVVED  EEEEV  
Sbjct: 181 AETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRLKVREPAPIVVEDEEEEEEVSL 240

Query: 242 EDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 281
           ED GEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET
Sbjct: 241 EDSGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEET 267

[Close]

BLAST of HG10000866 vs. TAIR 10
Match: AT5G24490.1 (30S ribosomal protein, putative )

HSP 1 Score: 294.3 bits (752), Expect = 1.5e-79
Identity = 153/205 (74.63%), Postives = 177/205 (86.34%), Query Frame = 0


Query: 82  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 141
           R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 142 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 201
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 202 KDSDRGRHMKGFDRSKVREPA-PIVVEDEEEEV-----FQEDGGEVIDEIVRTKYFDMPP 261
           KDSD GRHMKGF+R KVREP    VVED E+        +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 262 LTVEEAIEQLKNIDHDFYGFRNEET 281
           LTV EA+EQL+ + HDFYGF+NEET
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEET 265

The following BLAST results are available for this feature:

BLAST of HG10000866 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147328.1	7.3e-129	90.32	ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus] >KAE8651998.1 hyp...	[more]
XP_008460813.1	2.2e-125	88.89	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo] >TYK02023...	[more]
XP_038900446.1	1.5e-121	87.90	ribosome-binding factor PSRP1, chloroplastic [Benincasa hispida]	[more]
KAG7014676.1	2.4e-116	84.86	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
KAG6576623.1	3.2e-116	84.86	Ribosome-binding factor PSRP1, chloroplastic, partial [Cucurbita argyrosperma su...	[more]

BLAST of HG10000866 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19954	2.1e-70	56.83	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR...	[more]
P74518	1.3e-27	41.53	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
P47908	3.9e-24	39.11	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]
Q9RVE7	1.6e-14	32.18	Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13...	[more]
Q49VV1	3.1e-13	30.94	Ribosome hibernation promotion factor OS=Staphylococcus saprophyticus subsp. sap...	[more]

BLAST of HG10000866 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQR1	1.1e-125	88.89	Ribosome-binding factor PSRP1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CCT7	1.1e-125	88.89	ribosome-binding factor PSRP1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1E3S3	1.3e-115	83.80	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1J523	3.9e-112	88.33	ribosome-binding factor PSRP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CJG5	7.4e-111	81.05	ribosome-binding factor PSRP1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]

BLAST of HG10000866 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G24490.1	1.5e-79	74.63	30S ribosomal protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosome hibernation promoting factor/RaiA	TIGRFAM	TIGR00741	TIGR00741	coord: 104..206 e-value: 1.5E-18 score: 65.1
IPR003489	Ribosome hibernation promoting factor/RaiA	PFAM	PF02482	Ribosomal_S30AE	coord: 106..202 e-value: 2.4E-22 score: 79.5
IPR003489	Ribosome hibernation promoting factor/RaiA	CDD	cd00552	RaiA	coord: 104..202 e-value: 4.01406E-24 score: 93.3485
IPR038416	Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily	GENE3D	3.30.505.50		coord: 255..284 e-value: 2.5E-7 score: 32.3
IPR036567	Ribosome hibernation promotion factor-like	GENE3D	3.30.160.100		coord: 104..214 e-value: 1.6E-21 score: 78.5
IPR036567	Ribosome hibernation promotion factor-like	SUPERFAMILY	69754	Ribosome binding protein Y (YfiA homologue)	coord: 104..209
IPR032528	Sigma 54 modulation/S30EA ribosomal protein, C-terminal	PFAM	PF16321	Ribosom_S30AE_C	coord: 243..282 e-value: 3.0E-15 score: 55.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..342
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 346..374
None	No IPR available	PANTHER	PTHR33231	30S RIBOSOMAL PROTEIN	coord: 88..282
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN	coord: 88..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000866.1	HG10000866.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045900	negative regulation of translational elongation
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0043024	ribosomal small subunit binding
molecular_function	GO:0043022	ribosome binding