HG10000865 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000865
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionEnvelope-like protein
LocationChr09: 10301410 .. 10301595 (-)
RNA-Seq ExpressionHG10000865
SyntenyHG10000865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGATCTTGTGCGTGAACTTAAGGCAGGAGTTAAACAGGGGTGGCCCAAGTTTGGACAACTACTAAATGTCGCTAACCTAAATGTGAAATATGATATTCTTCACAAGATCGACATTGCTAATTGGTATCCCTCCACCCATGGATCTGGTGTTTCTCCTGCCCTAGCCACCCTCATCTATTAG

mRNA sequence

ATGCAGGATCTTGTGCGTGAACTTAAGGCAGGAGTTAAACAGGGGTGGCCCAAGTTTGGACAACTACTAAATGTCGCTAACCTAAATGTGAAATATGATATTCTTCACAAGATCGACATTGCTAATTGGTATCCCTCCACCCATGGATCTGGTGTTTCTCCTGCCCTAGCCACCCTCATCTATTAG

Coding sequence (CDS)

ATGCAGGATCTTGTGCGTGAACTTAAGGCAGGAGTTAAACAGGGGTGGCCCAAGTTTGGACAACTACTAAATGTCGCTAACCTAAATGTGAAATATGATATTCTTCACAAGATCGACATTGCTAATTGGTATCCCTCCACCCATGGATCTGGTGTTTCTCCTGCCCTAGCCACCCTCATCTATTAG

Protein sequence

MQDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY
Homology
BLAST of HG10000865 vs. NCBI nr
Match: KAA0063956.1 (uncharacterized protein E6C27_scaffold616G001050 [Cucumis melo var. makuwa] >TYK05183.1 uncharacterized protein E5676_scaffold1415G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-08
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  EL  G +  WP  GQ L  A+L+VKY IL+KI IANWYPSTH S +S +LA LIY
Sbjct: 235 KQLAVELFGGTEHSWPSDGQ-LPAASLSVKYAILNKIGIANWYPSTHASIISTSLAQLIY 293

BLAST of HG10000865 vs. NCBI nr
Match: KAA0040347.1 (uncharacterized protein E6C27_scaffold460G00530 [Cucumis melo var. makuwa] >TYK23357.1 uncharacterized protein E5676_scaffold142G004210 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 4   LVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 62
           L   L  G+   WP  G  +  A LNVKY ILHKIDIANW+PS+H S +S AL T +Y
Sbjct: 51  LATVLPGGILSTWPVNG--IPAAALNVKYAILHKIDIANWFPSSHASSISTALGTFLY 106

BLAST of HG10000865 vs. NCBI nr
Match: TYK26099.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  +L +G+ + WP  GQ L+VA L++KY ILHKI IANW PSTH S VS  L   IY
Sbjct: 158 EQLALQLSSGLVKSWPSEGQ-LSVACLSMKYAILHKIGIANWIPSTHASTVSATLGHFIY 216

BLAST of HG10000865 vs. NCBI nr
Match: KAA0059659.1 (envelope-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  +L +G+ + WP  GQ L+VA L++KY ILHKI IANW PSTH S VS  L   IY
Sbjct: 158 EQLALQLSSGLVKSWPSEGQ-LSVACLSMKYAILHKIGIANWIPSTHASTVSATLGHFIY 216

BLAST of HG10000865 vs. NCBI nr
Match: XP_038904458.1 (uncharacterized protein LOC120090822 [Benincasa hispida])

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1   MQDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLI 60
           ++DLV EL    +  WP+ GQ L  A LNVKY +LH+I I +W PS+H S +S ALATL+
Sbjct: 105 LRDLVFELIGEARSTWPRRGQ-LPTAGLNVKYTLLHRIGIYSWCPSSHKSSLSIALATLM 164

Query: 61  Y 62
           Y
Sbjct: 165 Y 164

BLAST of HG10000865 vs. ExPASy TrEMBL
Match: A0A5D3BZM1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00540 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.8e-08
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  EL  G +  WP  GQ L  A+L+VKY IL+KI IANWYPSTH S +S +LA LIY
Sbjct: 235 KQLAVELFGGTEHSWPSDGQ-LPAASLSVKYAILNKIGIANWYPSTHASIISTSLAQLIY 293

BLAST of HG10000865 vs. ExPASy TrEMBL
Match: A0A5D3DIA8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004210 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.9e-08
Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 4   LVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 62
           L   L  G+   WP  G  +  A LNVKY ILHKIDIANW+PS+H S +S AL T +Y
Sbjct: 51  LATVLPGGILSTWPVNG--IPAAALNVKYAILHKIDIANWFPSSHASSISTALGTFLY 106

BLAST of HG10000865 vs. ExPASy TrEMBL
Match: A0A5A7V1K3 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00990 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  +L +G+ + WP  GQ L+VA L++KY ILHKI IANW PSTH S VS  L   IY
Sbjct: 158 EQLALQLSSGLVKSWPSEGQ-LSVACLSMKYAILHKIGIANWIPSTHASTVSATLGHFIY 216

BLAST of HG10000865 vs. ExPASy TrEMBL
Match: A0A5D3DRS1 (Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00030 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.0e-08
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 2   QDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLIY 61
           + L  +L +G+ + WP  GQ L+VA L++KY ILHKI IANW PSTH S VS  L   IY
Sbjct: 158 EQLALQLSSGLVKSWPSEGQ-LSVACLSMKYAILHKIGIANWIPSTHASTVSATLGHFIY 216

BLAST of HG10000865 vs. ExPASy TrEMBL
Match: A0A5D3C5S4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00400 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-07
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0

Query: 1   MQDLVRELKAGVKQGWPKFGQLLNVANLNVKYDILHKIDIANWYPSTHGSGVSPALATLI 60
           ++ L  EL  G    WP  GQLL VA+L VKY ILH+I I+NW PSTH S +S +L   +
Sbjct: 316 LERLAEELMGGTVLVWPVDGQLL-VASLTVKYSILHQIGISNWIPSTHASTISTSLGHFV 375

Query: 61  Y 62
           Y
Sbjct: 376 Y 375

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063956.13.7e-0856.67uncharacterized protein E6C27_scaffold616G001050 [Cucumis melo var. makuwa] >TYK... [more]
KAA0040347.11.4e-0753.45uncharacterized protein E6C27_scaffold460G00530 [Cucumis melo var. makuwa] >TYK2... [more]
TYK26099.11.9e-0753.33envelope-like protein [Cucumis melo var. makuwa][more]
KAA0059659.11.9e-0753.33envelope-like protein [Cucumis melo var. makuwa][more]
XP_038904458.12.4e-0752.46uncharacterized protein LOC120090822 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZM11.8e-0856.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DIA86.9e-0853.45Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V1K39.0e-0853.33Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54... [more]
A0A5D3DRS19.0e-0853.33Envelope-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
A0A5D3C5S42.0e-0750.82Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000865.1HG10000865.1mRNA