HG10000830 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000830
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L10
Location	Chr09: 9925144 .. 9926185 (+)
RNA-Seq Expression	HG10000830
Synteny	HG10000830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATTTGCTGGAAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCAAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTTCGCCGCGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGTATGCCCCTTCATTCTCATTGCATCTGATACTGTTCTATATTAAGTTCCAATGCCTTTCCCTTGAGTGTATATTTGATTGAATGATTACTGTACAAACTTTTCTCTCTCAGGGGATTCACGAAATTTAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAGATTATGCCAGATGGTGTTAATGCAAAGGTATTTGATACTTGATAATTGCAGTCCTGTTCTAACCTAGGAAAATTAATCTAATTGTAGTAAGGGGAGGCTACTTTTTCTAAAATTAATCTAATAAAAACATGAGCTTGGCTTAGTGGTATTGGCATGTGCTTCGACTTGGTTTCAATTCCCCACTTTGCAATTGTAGTACTCAAGTTAGGAGGATACTTTTTCTTCCTAGGAATTCGTTGCATTTAACTGAAGTCAAATTTACAAACTAAAGAAACATGGGGCACGTCTTTGAGCCAAACAACATAGTTATACCCTGGCAATGCTATGAATGGGCCTTCCTTGTTAGCTCTTGGGAACATATTTTTAATTGTGTAATATTGTATTTCTTGGTTGTTCATCACTTATAAGCAACAATCATTGGATCAATATGTTTATATATTTCAATAGTTTGTTCTGAGTTGTATTGTTCTGAATTTTTTTTTGAGTTAAAACTCATGGTGTGAAAATTGGACTGTGCAGCTTCTTGGATGCCATGGCCCTCTTGCAAACCGTCAGCCTGGAAGAGCTTTTCTACCCCAAACTGCCTAA

mRNA sequence

ATGGCGAAATTTGCTGGAAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCAAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTTCGCCGCGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGGGATTCACGAAATTTAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAGATTATGCCAGATGGTGTTAATGCAAAGCTTCTTGGATGCCATGGCCCTCTTGCAAACCGTCAGCCTGGAAGAGCTTTTCTACCCCAAACTGCCTAA

Coding sequence (CDS)

ATGGCGAAATTTGCTGGAAAAGATGCGTTTCATTTGAGGGTTAGAGTTCATCCCTTCCATGTTCTTCGAATTAACAAGATGCTTTCATGTGCTGGAGCTGATAGGCTCCAAACTGGTATGAGAGGTGCTTTTGGTAAGCCACAAGGAACTTGTGCAAGAGTCGCCATTGGTCAGGTTCTTCTTTCTGTTCGATGCAAGGACAGCAACAGCCAGCATGCTCAGGAGGCCCTTCGCCGCGCTAAGTTCAAGTTTCCTGGTCGTCAGAAGATCATTGTCAGCAGGAAGTGGGGATTCACGAAATTTAGCCGAGCTGATTATCTCAAGTTCAAGTCAGAGAACAAGATTATGCCAGATGGTGTTAATGCAAAGCTTCTTGGATGCCATGGCCCTCTTGCAAACCGTCAGCCTGGAAGAGCTTTTCTACCCCAAACTGCCTAA

Protein sequence

MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKLLGCHGPLANRQPGRAFLPQTA

Homology

[Close]

BLAST of HG10000830 vs. NCBI nr
Match: XP_008460864.1 (PREDICTED: 60S ribosomal protein L10 [Cucumis melo] >XP_038900395.1 60S ribosomal protein L10 [Benincasa hispida] >KAA0040746.1 60S ribosomal protein L10 [Cucumis melo var. makuwa] >TYK02062.1 60S ribosomal protein L10 [Cucumis melo var. makuwa])

HSP 1 Score: 301.2 bits (770), Expect = 4.8e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. NCBI nr
Match: XP_022148973.1 (60S ribosomal protein L10-like [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 4.0e-77
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +KSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLSYKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. NCBI nr
Match: XP_004147346.1 (60S ribosomal protein L10 [Cucumis sativus] >KGN62212.1 hypothetical protein Csa_016962 [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQT 145
           NAKLLGCHGPLANRQPGRAFL QT
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLSQT 219

[Close]

BLAST of HG10000830 vs. NCBI nr
Match: XP_022142890.1 (60S ribosomal protein L10-like [Momordica charantia] >XP_022142891.1 60S ribosomal protein L10-like [Momordica charantia])

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-76
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLNYKAENKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. NCBI nr
Match: XP_008459481.1 (PREDICTED: 60S ribosomal protein L10-like [Cucumis melo])

HSP 1 Score: 295.4 bits (755), Expect = 2.6e-76
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 101 MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 160

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGV
Sbjct: 161 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLAYKAENKILPDGV 220

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 221 NAKLLGCHGPLANRQPGRAFLPQTA 245

[Close]

BLAST of HG10000830 vs. ExPASy Swiss-Prot
Match: Q9SPB3 (60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 3.1e-72
Identity = 126/141 (89.36%), Postives = 136/141 (96.45%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K+AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV+IGQVL
Sbjct: 76  MTKYAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD NS HAQEALRRAKFKFP RQKIIVSRKWGFTKF+R DY+K+KS+N+I+PDGV
Sbjct: 136 LSVRCKDGNSHHAQEALRRAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAKLLGCHGPLANRQPG+AF+
Sbjct: 196 NAKLLGCHGPLANRQPGKAFI 216

[Close]

BLAST of HG10000830 vs. ExPASy Swiss-Prot
Match: P93847 (60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.0e-71
Identity = 130/141 (92.20%), Postives = 133/141 (94.33%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVL
Sbjct: 76  MTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD NS HAQEALRRAKFKFPGRQKIIVSRKWGFTKFSR DYLK+KSEN+I+PDGV
Sbjct: 136 LSVRCKDGNSNHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAKLLG HGPLA RQPGRAFL
Sbjct: 196 NAKLLGNHGPLAARQPGRAFL 216

[Close]

BLAST of HG10000830 vs. ExPASy Swiss-Prot
Match: Q9M5M7 (60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-70
Identity = 127/145 (87.59%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M KFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVL
Sbjct: 76  MTKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD+NS +AQEALRRAKFKFPGRQKIIVSRKWGFTK +RADY + KSEN+I+PDGV
Sbjct: 136 LSVRCKDNNSHNAQEALRRAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHG LANR+PGRAF+   A
Sbjct: 196 NAKLLGCHGRLANRKPGRAFIDAVA 220

[Close]

BLAST of HG10000830 vs. ExPASy Swiss-Prot
Match: Q40592 (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 1.4e-69
Identity = 126/137 (91.97%), Postives = 130/137 (94.89%), Query Frame = 0


Query: 5   AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVR 64
           AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQG CARVAIGQVLLSVR
Sbjct: 9   AGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVR 68

Query: 65  CKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGVNAKL 124
           CKD N+ HAQEALRRAKFKFP RQKIIVSRKWGFTKFSR DYLK+KSEN+I+PDGVNAKL
Sbjct: 69  CKDGNANHAQEALRRAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKL 128

Query: 125 LGCHGPLANRQPGRAFL 142
           LGCHG LA RQPGRAFL
Sbjct: 129 LGCHGRLAARQPGRAFL 145

[Close]

BLAST of HG10000830 vs. ExPASy Swiss-Prot
Match: O22431 (60S ribosomal protein L10 OS=Pinus taeda OX=3352 GN=RPL10 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 7.9e-68
Identity = 120/141 (85.11%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M KFAGKD FHLRVRVHPFHVLR NKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MVKFAGKDGFHLRVRVHPFHVLRSNKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVR +D++S HAQEALRRAKFKFPGR+KIIV+RKWGFTK++RADYLK+K+EN+I+PDGV
Sbjct: 136 LSVRSRDNHSNHAQEALRRAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           N KLLGC GPL+NR+PG+AFL
Sbjct: 196 NPKLLGCRGPLSNRKPGQAFL 216

[Close]

BLAST of HG10000830 vs. ExPASy TrEMBL
Match: A0A5A7TFE6 (60S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00450 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. ExPASy TrEMBL
Match: A0A1S3CDF3 (60S ribosomal protein L10 OS=Cucumis melo OX=3656 GN=LOC103499612 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.3e-78
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. ExPASy TrEMBL
Match: A0A6J1D5K0 (60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111017508 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 2.0e-77
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +KSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLSYKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. ExPASy TrEMBL
Match: A0A0A0LN38 (Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336100 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 5.7e-77
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQT 145
           NAKLLGCHGPLANRQPGRAFL QT
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLSQT 219

[Close]

BLAST of HG10000830 vs. ExPASy TrEMBL
Match: A0A6J1CM71 (60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111012895 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 9.7e-77
Identity = 141/145 (97.24%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL
Sbjct: 76  MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYL +K+ENKI+PDGV
Sbjct: 136 LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLNYKAENKILPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAKLLGCHGPLANRQPGRAFLPQTA
Sbjct: 196 NAKLLGCHGPLANRQPGRAFLPQTA 220

[Close]

BLAST of HG10000830 vs. TAIR 10
Match: AT1G14320.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 256.9 bits (655), Expect = 9.6e-69
Identity = 120/142 (84.51%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ K + E +++PDGV
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLP 143
           NAK L CHGPLANRQPG AFLP
Sbjct: 196 NAKFLSCHGPLANRQPGSAFLP 217

[Close]

BLAST of HG10000830 vs. TAIR 10
Match: AT1G26910.1 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 256.1 bits (653), Expect = 1.6e-68
Identity = 121/141 (85.82%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RADY K + E +I+PDGV
Sbjct: 136 LSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFL 142
           NAK L CHGPLANRQPG AFL
Sbjct: 196 NAKFLSCHGPLANRQPGSAFL 216

[Close]

BLAST of HG10000830 vs. TAIR 10
Match: AT1G66580.1 (senescence associated gene 24 )

HSP 1 Score: 248.1 bits (632), Expect = 4.5e-66
Identity = 118/145 (81.38%), Postives = 129/145 (88.97%), Query Frame = 0


Query: 1   MAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVL 60
           M K AGKDAFHLR+RVHPFHVLRINKMLSCAGADRLQTGMRGAFGK  GTCARVAIGQVL
Sbjct: 76  MVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVL 135

Query: 61  LSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSENKIMPDGV 120
           LSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y K ++  +I+PDGV
Sbjct: 136 LSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGV 195

Query: 121 NAKLLGCHGPLANRQPGRAFLPQTA 146
           NAK L  HGPLANRQPG AF+  T+
Sbjct: 196 NAKFLSNHGPLANRQPGSAFISATS 220

[Close]

BLAST of HG10000830 vs. TAIR 10
Match: AT1G14320.2 (Ribosomal protein L16p/L10e family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-36
Identity = 70/93 (75.27%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 52  ARVAIGQ--VLLSVRCKDSNSQHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKF 111
           AR+A  +  VLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RAD+ K 
Sbjct: 68  ARIACNKYMVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKL 127

Query: 112 KSENKIMPDGVNAKLLGCHGPLANRQPGRAFLP 143
           + E +++PDGVNAK L CHGPLANRQPG AFLP
Sbjct: 128 RQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLP 160

The following BLAST results are available for this feature:

BLAST of HG10000830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460864.1	4.8e-78	100.00	PREDICTED: 60S ribosomal protein L10 [Cucumis melo] >XP_038900395.1 60S ribosoma...	[more]
XP_022148973.1	4.0e-77	98.62	60S ribosomal protein L10-like [Momordica charantia]	[more]
XP_004147346.1	1.2e-76	99.31	60S ribosomal protein L10 [Cucumis sativus] >KGN62212.1 hypothetical protein Csa...	[more]
XP_022142890.1	2.0e-76	97.24	60S ribosomal protein L10-like [Momordica charantia] >XP_022142891.1 60S ribosom...	[more]
XP_008459481.1	2.6e-76	97.24	PREDICTED: 60S ribosomal protein L10-like [Cucumis melo]	[more]

BLAST of HG10000830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SPB3	3.1e-72	89.36	60S ribosomal protein L10 OS=Vitis riparia OX=96939 GN=RPL10 PE=2 SV=1	[more]
P93847	2.0e-71	92.20	60S ribosomal protein L10 OS=Solanum melongena OX=4111 GN=RPL10 PE=2 SV=1	[more]
Q9M5M7	1.3e-70	87.59	60S ribosomal protein L10 OS=Euphorbia esula OX=3993 GN=RPL10 PE=2 SV=1	[more]
Q40592	1.4e-69	91.97	60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum OX=4097 GN=RPL10 PE=2 ...	[more]
O22431	7.9e-68	85.11	60S ribosomal protein L10 OS=Pinus taeda OX=3352 GN=RPL10 PE=2 SV=1	[more]

BLAST of HG10000830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFE6	2.3e-78	100.00	60S ribosomal protein L10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CDF3	2.3e-78	100.00	60S ribosomal protein L10 OS=Cucumis melo OX=3656 GN=LOC103499612 PE=3 SV=1	[more]
A0A6J1D5K0	2.0e-77	98.62	60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111017508 PE...	[more]
A0A0A0LN38	5.7e-77	99.31	Ribosomal_L16 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G3361...	[more]
A0A6J1CM71	9.7e-77	97.24	60S ribosomal protein L10-like OS=Momordica charantia OX=3673 GN=LOC111012895 PE...	[more]

BLAST of HG10000830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14320.1	9.6e-69	84.51	Ribosomal protein L16p/L10e family protein	[more]
AT1G26910.1	1.6e-68	85.82	Ribosomal protein L16p/L10e family protein	[more]
AT1G66580.1	4.5e-66	81.38	senescence associated gene 24	[more]
AT1G14320.2	2.2e-36	75.27	Ribosomal protein L16p/L10e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016180	Ribosomal protein L10e/L16	PFAM	PF00252	Ribosomal_L16	coord: 4..91 e-value: 1.6E-20 score: 73.5
IPR016180	Ribosomal protein L10e/L16	CDD	cd01433	Ribosomal_L16_L10e	coord: 1..91 e-value: 3.01729E-30 score: 103.725
None	No IPR available	GENE3D	3.30.60.300		coord: 104..139 e-value: 1.3E-15 score: 58.5
None	No IPR available	PANTHER	PTHR11726:SF42	60S RIBOSOMAL PROTEIN L10-LIKE	coord: 1..142
IPR036920	Ribosomal protein L10e/L16 superfamily	GENE3D	3.90.1170.10	Ribosomal protein L10e/L16	coord: 1..103 e-value: 8.4E-60 score: 203.0
IPR036920	Ribosomal protein L10e/L16 superfamily	SUPERFAMILY	54686	Ribosomal protein L16p/L10e	coord: 1..101
IPR001197	Ribosomal protein L10e	PANTHER	PTHR11726	60S RIBOSOMAL PROTEIN L10	coord: 1..142
IPR018255	Ribosomal protein L10e, conserved site	PROSITE	PS01257	RIBOSOMAL_L10E	coord: 33..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000830.1	HG10000830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome