HG10000825 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000825
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	agamous-like MADS-box protein AGL103
Location	Chr09: 9899669 .. 9900025 (-)
RNA-Seq Expression	HG10000825
Synteny	HG10000825

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGAGGAAAACTGAGCATGAAACTAATCAGCAACGAGAAATCTCGAAAGACGACGTTTTATAAGCGGAAAGCAAGTCTGTTACGAAAAGCTTACGAGCTATCTACACTGTGCGATGTTCGTACTTATGTCTTTGTCTATGGCCCTAACCAAAATGACCAATCTACCCTCCAACTTCACACGTGGCCCTCGTGTCCAGAACACGTCAACGAAATGATCGCTTCTTACAAGGCTAATTGTCTCCATAAACGTGCTCGCAAGGCCTTCGGTCTCCTCGACTTCTTCTCCGATAGGAAGAAGAAGATTGAAACCGACATGTCCAAGCTTCGCAAGGATGTTGCTGAAGCCAGGTAA

mRNA sequence

ATGGGGAGAGGAAAACTGAGCATGAAACTAATCAGCAACGAGAAATCTCGAAAGACGACGTTTTATAAGCGGAAAGCAAGTCTGTTACGAAAAGCTTACGAGCTATCTACACTGTGCGATGTTCGTACTTATGTCTTTGTCTATGGCCCTAACCAAAATGACCAATCTACCCTCCAACTTCACACGTGGCCCTCGTGTCCAGAACACGTCAACGAAATGATCGCTTCTTACAAGGCTAATTGTCTCCATAAACGTGCTCGCAAGGCCTTCGGTCTCCTCGACTTCTTCTCCGATAGGAAGAAGAAGATTGAAACCGACATGTCCAAGCTTCGCAAGGATGTTGCTGAAGCCAGGTAA

Coding sequence (CDS)

ATGGGGAGAGGAAAACTGAGCATGAAACTAATCAGCAACGAGAAATCTCGAAAGACGACGTTTTATAAGCGGAAAGCAAGTCTGTTACGAAAAGCTTACGAGCTATCTACACTGTGCGATGTTCGTACTTATGTCTTTGTCTATGGCCCTAACCAAAATGACCAATCTACCCTCCAACTTCACACGTGGCCCTCGTGTCCAGAACACGTCAACGAAATGATCGCTTCTTACAAGGCTAATTGTCTCCATAAACGTGCTCGCAAGGCCTTCGGTCTCCTCGACTTCTTCTCCGATAGGAAGAAGAAGATTGAAACCGACATGTCCAAGCTTCGCAAGGATGTTGCTGAAGCCAGGTAA

Protein sequence

MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQLHTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR

Homology

[Close]

BLAST of HG10000825 vs. NCBI nr
Match: XP_008460878.1 (PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa] >TYK02066.1 MADS-box protein SOC1-like [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.0e-50
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQ 60
           MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR  VFV+GPNQ NDQS LQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           LHTWP CP+ VN MIASYK NCLHKRARKAFGL+DFFS+RKKK+ETDMSKLRKDVAEAR
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEAR 119

[Close]

BLAST of HG10000825 vs. NCBI nr
Match: XP_038890378.1 (floral homeotic protein FBP1-like [Benincasa hispida])

HSP 1 Score: 204.1 bits (518), Expect = 6.5e-49
Identity = 102/118 (86.44%), Postives = 106/118 (89.83%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSMKLI NEKSRKTTFYKRKASLLRKAYELSTLCDVR  VFVYGPNQNDQS  Q+
Sbjct: 1   MGRGKLSMKLIGNEKSRKTTFYKRKASLLRKAYELSTLCDVRVCVFVYGPNQNDQSPFQV 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           HTWP C E VN +IASYK NCLHKRA KA GLLDFFS+RKKKIETDMSKLRKDVA+AR
Sbjct: 61  HTWPPCREDVNNLIASYKTNCLHKRAHKACGLLDFFSERKKKIETDMSKLRKDVAKAR 118

[Close]

BLAST of HG10000825 vs. NCBI nr
Match: XP_023512369.1 (agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR  VFVYGPN NDQS ++L
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNHNDQSPVEL 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           +TWP C E VN MIASYKANCLHKRARKAF LLDFFS+RKKK+E DMSKLRKDV EAR
Sbjct: 61  NTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEAR 118

[Close]

BLAST of HG10000825 vs. NCBI nr
Match: KAG6571340.1 (MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR  VFVYGPN NDQS ++L
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNHNDQSPVEL 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           +TWP C E VN MIASYKANCLHKRARKAF LLDFFS+RKKK+E DMSKLRKDV EAR
Sbjct: 61  NTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEAR 118

[Close]

BLAST of HG10000825 vs. NCBI nr
Match: KAG7011113.1 (MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR  VFVYGPN NDQS ++L
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNHNDQSPVEL 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           +TWP C E VN MIASYKANCLHKRARKAF LLDFFS+RKKK+E DMSKLRKDV EAR
Sbjct: 61  NTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEAR 118

[Close]

BLAST of HG10000825 vs. ExPASy Swiss-Prot
Match: Q9FIM0 (Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 6   LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V T + VYGP +  D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  SCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSK 110
                V  +I  YK + +    RK   +  F +D  K  E    K
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKK 109

[Close]

BLAST of HG10000825 vs. ExPASy Swiss-Prot
Match: Q39295 (Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.9e-07
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVY 49
          MGRGK+ +K I N  SR+ TF KR+A LL+KA+ELS LCD    V V+
Sbjct: 1  MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVF 48

[Close]

BLAST of HG10000825 vs. ExPASy Swiss-Prot
Match: Q38836 (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.4e-07
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYG--------PNQ 60
          MGRGK+ +K I N  +R+ TF KR+  LL+KAYELS LCD    + V+          N 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 NDQSTLQLHTWPSCPEHVN 72
          N +ST++ +   +C +  N
Sbjct: 61 NIRSTIERYK-KACSDSTN 78

[Close]

BLAST of HG10000825 vs. ExPASy Swiss-Prot
Match: G4MWZ7 (MADS-box MEF2 type transcription factor MIG1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) OX=242507 GN=MIG1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ 53
          MGR K+ +K I ++++R  TF KRK  L +KA+ELS LC V   VF++G N+
Sbjct: 1  MGRRKIEIKAIKDDRNRSVTFLKRKGGLFKKAHELSVLCSVDVAVFIFGTNK 52

[Close]

BLAST of HG10000825 vs. ExPASy Swiss-Prot
Match: A9YDN6 (MADS-box MEF2 type transcription factor MIG1 OS=Magnaporthe oryzae OX=318829 GN=MIG1 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 8.3e-07
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ 53
          MGR K+ +K I ++++R  TF KRK  L +KA+ELS LC V   VF++G N+
Sbjct: 1  MGRRKIEIKAIKDDRNRSVTFLKRKGGLFKKAHELSVLCSVDVAVFIFGTNK 52

[Close]

BLAST of HG10000825 vs. ExPASy TrEMBL
Match: A0A5D3BUZ8 (MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00490 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.7e-51
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQ 60
           MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR  VFV+GPNQ NDQS LQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           LHTWP CP+ VN MIASYK NCLHKRARKAFGL+DFFS+RKKK+ETDMSKLRKDVAEAR
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEAR 119

[Close]

BLAST of HG10000825 vs. ExPASy TrEMBL
Match: A0A1S3CDG6 (MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.7e-51
Identity = 105/119 (88.24%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQ 60
           MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR  VFV+GPNQ NDQS LQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVFVHGPNQSNDQSPLQ 60

Query: 61  LHTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           LHTWP CP+ VN MIASYK NCLHKRARKAFGL+DFFS+RKKK+ETDMSKLRKDVAEAR
Sbjct: 61  LHTWPPCPDEVNSMIASYKTNCLHKRARKAFGLIDFFSERKKKVETDMSKLRKDVAEAR 119

[Close]

BLAST of HG10000825 vs. ExPASy TrEMBL
Match: A0A6J1EVI5 (agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC111438359 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 98/118 (83.05%), Postives = 104/118 (88.14%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR  VFVYGPN NDQS ++L
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRACVFVYGPNHNDQSPVEL 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           +TWP C E VN MIASYKANCLHKRARKAF LLDFFS+RKKK+E DMSKLRKDV EAR
Sbjct: 61  NTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEAR 118

[Close]

BLAST of HG10000825 vs. ExPASy TrEMBL
Match: A0A0A0LME6 (MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.1e-45
Identity = 97/119 (81.51%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQ 60
           MGRGKLSMKLISNEKSRKTTF+KRKASLLRKAYELSTLCDVR  V V+GPNQ NDQS LQ
Sbjct: 1   MGRGKLSMKLISNEKSRKTTFHKRKASLLRKAYELSTLCDVRVCVVVHGPNQSNDQSPLQ 60

Query: 61  LHTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           LHTWP   + VN MIASYK NCL+KR RK+FGL+DFFS+RKKK+ETDMSKLRKDV+E R
Sbjct: 61  LHTWPPSADEVNNMIASYKTNCLYKRVRKSFGLIDFFSERKKKVETDMSKLRKDVSEER 119

[Close]

BLAST of HG10000825 vs. ExPASy TrEMBL
Match: A0A6J1ICD8 (agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.7e-45
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           MGRGKLSM+LI NEKSRKTTF KRK SLLRKAYELSTLCDVR  V V+GPN NDQS  +L
Sbjct: 1   MGRGKLSMQLIGNEKSRKTTFLKRKKSLLRKAYELSTLCDVRVCVLVHGPNHNDQSPFEL 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAEAR 119
           +TWP C E VN MIASYKANCLHKRARKAF LLDFFS+RKKK+E DMSKLRKDV EAR
Sbjct: 61  NTWPPCREEVNNMIASYKANCLHKRARKAFDLLDFFSERKKKLENDMSKLRKDVLEAR 118

[Close]

BLAST of HG10000825 vs. TAIR 10
Match: AT5G55690.1 (MADS-box transcription factor family protein )

HSP 1 Score: 68.2 bits (165), Expect = 5.2e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQ 60
          MGR  + M  I+NEK+R TT+ KRKA L +KA E STLC V T V VYGP++  D+  ++
Sbjct: 1  MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60

Query: 61 LHTWPSCPEHVNEMIASYK 79
             WP     V E++  Y+
Sbjct: 61 PELWPKDGSKVREILTKYR 79

[Close]

BLAST of HG10000825 vs. TAIR 10
Match: AT5G26630.1 (MADS-box transcription factor family protein )

HSP 1 Score: 61.6 bits (148), Expect = 4.8e-10
Identity = 41/116 (35.34%), Postives = 56/116 (48.28%), Query Frame = 0


Query: 1   MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQNDQSTLQL 60
           M R K+ M  I NE +RK+TF KRK  LL+KA EL  LC V  +  V  P +     L  
Sbjct: 1   MTRQKVKMTFIENETARKSTFKKRKKGLLKKAQELGILCGVPIFAVVNSPYE-----LNP 60

Query: 61  HTWPSCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSKLRKDVAE 117
             WPS  E  N++++ +K   +  + +K      F   R  K      KLRK+  E
Sbjct: 61  EVWPS-REAANQVVSQWKTMSVMDKTKKMVNQETFLQQRITKATESWKKLRKENKE 110

[Close]

BLAST of HG10000825 vs. TAIR 10
Match: AT5G58890.1 (AGAMOUS-like 82 )

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-09
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 0


Query: 6   LSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYGPNQ-NDQSTLQLHTWP 65
           + ++ I+N+K+R TT+ KRKASL +KA E STLC V T + VYGP +  D    +   WP
Sbjct: 6   VDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPEIWP 65

Query: 66  SCPEHVNEMIASYKANCLHKRARKAFGLLDFFSDRKKKIETDMSK 110
                V  +I  YK + +    RK   +  F +D  K  E    K
Sbjct: 66  KDETKVRAIIRKYK-DTVSTSCRKETNVETFVNDVGKGNEVVTKK 109

[Close]

BLAST of HG10000825 vs. TAIR 10
Match: AT4G09960.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-08
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYG--------PNQ 60
          MGRGK+ +K I N  +R+ TF KR+  LL+KAYELS LCD    + V+          N 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 NDQSTLQLHTWPSCPEHVN 72
          N +ST++ +   +C +  N
Sbjct: 61 NIRSTIERYK-KACSDSTN 78

[Close]

BLAST of HG10000825 vs. TAIR 10
Match: AT4G09960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-08
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MGRGKLSMKLISNEKSRKTTFYKRKASLLRKAYELSTLCDVRTYVFVYG--------PNQ 60
          MGRGK+ +K I N  +R+ TF KR+  LL+KAYELS LCD    + V+          N 
Sbjct: 1  MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANN 60

Query: 61 NDQSTLQLHTWPSCPEHVN 72
          N +ST++ +   +C +  N
Sbjct: 61 NIRSTIERYK-KACSDSTN 78

The following BLAST results are available for this feature:

BLAST of HG10000825 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460878.1	2.0e-50	88.24	PREDICTED: MADS-box protein SOC1-like [Cucumis melo] >KAA0040750.1 MADS-box prot...	[more]
XP_038890378.1	6.5e-49	86.44	floral homeotic protein FBP1-like [Benincasa hispida]	[more]
XP_023512369.1	2.3e-46	83.05	agamous-like MADS-box protein AGL103 [Cucurbita pepo subsp. pepo]	[more]
KAG6571340.1	2.3e-46	83.05	MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7011113.1	2.3e-46	83.05	MADS-box transcription factor PHERES 2, partial [Cucurbita argyrosperma subsp. a...	[more]

BLAST of HG10000825 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIM0	4.4e-08	37.14	Agamous-like MADS-box protein AGL82 OS=Arabidopsis thaliana OX=3702 GN=AGL82 PE=...	[more]
Q39295	4.9e-07	56.25	Agamous-like MADS-box protein AGL15 OS=Brassica napus OX=3708 GN=AGL15 PE=3 SV=1	[more]
Q38836	6.4e-07	39.24	Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana OX=3702 GN=AGL11 PE=...	[more]
G4MWZ7	8.3e-07	48.08	MADS-box MEF2 type transcription factor MIG1 OS=Magnaporthe oryzae (strain 70-15...	[more]
A9YDN6	8.3e-07	48.08	MADS-box MEF2 type transcription factor MIG1 OS=Magnaporthe oryzae OX=318829 GN=...	[more]

BLAST of HG10000825 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUZ8	9.7e-51	88.24	MADS-box protein SOC1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CDG6	9.7e-51	88.24	MADS-box protein SOC1-like OS=Cucumis melo OX=3656 GN=LOC103499621 PE=4 SV=1	[more]
A0A6J1EVI5	1.1e-46	83.05	agamous-like MADS-box protein AGL103 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A0A0LME6	2.1e-45	81.51	MADS-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G336070 PE...	[more]
A0A6J1ICD8	2.7e-45	81.36	agamous-like MADS-box protein AGL103 OS=Cucurbita maxima OX=3661 GN=LOC111472387...	[more]

BLAST of HG10000825 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55690.1	5.2e-12	45.57	MADS-box transcription factor family protein	[more]
AT5G26630.1	4.8e-10	35.34	MADS-box transcription factor family protein	[more]
AT5G58890.1	3.1e-09	37.14	AGAMOUS-like 82	[more]
AT4G09960.2	4.5e-08	39.24	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.1	4.5e-08	39.24	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 93..113
None	No IPR available	PANTHER	PTHR11945:SF482	AGAMOUS-LIKE MADS-BOX PROTEIN AGL80	coord: 3..116
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..116
None	No IPR available	CDD	cd00120	MADS	coord: 2..65 e-value: 2.44466E-19 score: 73.317
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 3..23 score: 43.61 coord: 23..38 score: 62.47 coord: 38..59 score: 16.71
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..60 e-value: 6.4E-16 score: 68.9
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 11..52 e-value: 1.3E-16 score: 59.8
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..51 score: 18.768501
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 13..105 e-value: 3.7E-16 score: 61.0
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 2..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000825.1	HG10000825.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding