HG10000657 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000657
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	60S ribosomal protein L26
Location	Chr09: 7700032 .. 7700472 (-)
RNA-Seq Expression	HG10000657
Synteny	HG10000657

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

mRNA sequence

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD

Homology

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BLAST of HG10000657 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S ribosomal protein L26-1-like [Benincasa hispida] >KAA0045834.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa] >TYJ99449.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 279.3 bits (713), Expect = 2.0e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. NCBI nr
Match: XP_004148028.1 (60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein Csa_006447 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 1.7e-70
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6605230.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035196.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.9 bits (699), Expect = 8.2e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6571308.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019317.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.5 bits (698), Expect = 1.1e-69
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of HG10000657 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.1e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of HG10000657 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.7e-60
Identity = 115/145 (79.31%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RR+ MS+PLS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of HG10000657 vs. ExPASy Swiss-Prot
Match: P12749 (60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of HG10000657 vs. ExPASy Swiss-Prot
Match: P61257 (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-44
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of HG10000657 vs. ExPASy TrEMBL
Match: A0A5A7TS06 (60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00090 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.5e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. ExPASy TrEMBL
Match: A0A1S3C7Q4 (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 9.5e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. ExPASy TrEMBL
Match: A0A0A0LJI3 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.0e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. ExPASy TrEMBL
Match: A0A6J1D6T1 (60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 PE=3 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. ExPASy TrEMBL
Match: A0A6J1L4P7 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of HG10000657 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 250.4 bits (638), Expect = 9.1e-67
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of HG10000657 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 245.7 bits (626), Expect = 2.2e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of HG10000657 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457837.1	2.0e-71	100.00	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S r...	[more]
XP_004148028.1	1.7e-70	99.32	60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein C...	[more]
XP_022149443.1	2.8e-70	97.26	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_022948229.1	8.2e-70	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]
XP_022931741.1	1.1e-69	97.26	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]

BLAST of HG10000657 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	1.3e-65	84.93	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	3.1e-64	83.56	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	4.7e-60	79.31	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
P12749	1.6e-44	67.61	60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1	[more]
P61257	3.6e-44	67.61	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]

BLAST of HG10000657 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TS06	9.5e-72	100.00	60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C7Q4	9.5e-72	100.00	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]
A0A0A0LJI3	8.0e-71	99.32	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=3 SV...	[more]
A0A6J1D6T1	1.4e-70	97.26	60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 ...	[more]
A0A6J1L4P7	4.0e-70	95.89	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=...	[more]

BLAST of HG10000657 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	9.1e-67	84.93	Translation protein SH3-like family protein	[more]
AT5G67510.1	2.2e-65	83.56	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 4.9E-6 score: 36.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 8.8E-10 score: 38.2
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 2.9E-38 score: 130.7
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 2.4E-51 score: 171.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.470404
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..144 e-value: 7.1E-57 score: 193.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF15	60S RIBOSOMAL PROTEIN L26-1-LIKE	coord: 1..146
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 4.06147E-15 score: 63.6878
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000657.1	HG10000657.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome