HG10000613 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000613
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	cysteine-rich and transmembrane domain-containing protein A-like
Location	Chr09: 6998693 .. 6999011 (+)
RNA-Seq Expression	HG10000613
Synteny	HG10000613

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACTACGACCACCAACAACCGCCTGTTGGGGCTCCGCCGCCGCAAGGTCAGCCACACAGGAGCTGTCCTCTCTTTTTATTTCTTTCATTAATTTGTTAGTTGTTGTTCATTCATTCATATCATATTTGTTGTAGGATTCCCTCCCAAGGACGCTTACCCTCCCCCAGGGTACCCTGTTCAGGGCTACCCTGCAGCGCAAGGCTACCCTCCGCCGCCGCCGCCGCCGGCTTATGGCCCACAGTACACTCAACCTCCTCCCAAGAATGAAACAACTGGTTGCCTTGAAGGATGGTCAGTCACCTTCCCTCTTTAA

mRNA sequence

ATGAGTTACTACGACCACCAACAACCGCCTGTTGGGGCTCCGCCGCCGCAAGGATTCCCTCCCAAGGACGCTTACCCTCCCCCAGGGTACCCTGTTCAGGGCTACCCTGCAGCGCAAGGCTACCCTCCGCCGCCGCCGCCGCCGGCTTATGGCCCACAGTACACTCAACCTCCTCCCAAGAATGAAACAACTGGTTGCCTTGAAGGATGGTCAGTCACCTTCCCTCTTTAA

Coding sequence (CDS)

ATGAGTTACTACGACCACCAACAACCGCCTGTTGGGGCTCCGCCGCCGCAAGGATTCCCTCCCAAGGACGCTTACCCTCCCCCAGGGTACCCTGTTCAGGGCTACCCTGCAGCGCAAGGCTACCCTCCGCCGCCGCCGCCGCCGGCTTATGGCCCACAGTACACTCAACCTCCTCCCAAGAATGAAACAACTGGTTGCCTTGAAGGATGGTCAGTCACCTTCCCTCTTTAA

Protein sequence

MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQYTQPPPKNETTGCLEGWSVTFPL

Homology

[Close]

BLAST of HG10000613 vs. NCBI nr
Match: XP_011649307.1 (cysteine-rich and transmembrane domain-containing protein WIH1 [Cucumis sativus] >KGN61955.1 hypothetical protein Csa_005974 [Cucumis sativus])

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY-PPPPPPPAYGPQYTQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY PPPPPPP Y PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEG 70
          KNETTGCLEG
Sbjct: 61 KNETTGCLEG 70

[Close]

BLAST of HG10000613 vs. NCBI nr
Match: KAG7035191.1 (hypothetical protein SDJN02_01986, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 65/76 (85.53%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQY---TQP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP Y PQY   TQ 
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPKNETTGCLEGWSVT 74
          PP  + TGCLEGWSVT
Sbjct: 61 PPPKDKTGCLEGWSVT 76

[Close]

BLAST of HG10000613 vs. NCBI nr
Match: XP_022947084.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 65/76 (85.53%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQY---TQP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP Y PQY   TQ 
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPKNETTGCLEGWSVT 74
          PP  + TGCLEGWSVT
Sbjct: 61 PPPKDKTGCLEGWSVT 76

[Close]

BLAST of HG10000613 vs. NCBI nr
Match: XP_008457737.2 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY-PPPPPPPAYGPQYTQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYPAAQGY PPPPPPP Y PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEG 70
          KNE+TGCLEG
Sbjct: 61 KNESTGCLEG 70

[Close]

BLAST of HG10000613 vs. NCBI nr
Match: XP_038901964.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 2.6e-27
Identity = 65/71 (91.55%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY--PPPPPPPAYGPQYTQPP 60
          MSYYDHQQPPVGAPPPQGFP KDAYPPPGYPVQGYPAAQGY  PPPPPPP Y PQY QPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPSKDAYPPPGYPVQGYPAAQGYPQPPPPPPPGYAPQYAQPP 60

Query: 61 PKNETTGCLEG 70
          PKNETTGCLEG
Sbjct: 61 PKNETTGCLEG 71

[Close]

BLAST of HG10000613 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-10
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPA---AQGYPPPPPPPAYGPQYTQPPPK 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP   PQY+Q P +
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQYSQAPQQ 61

Query: 64 NETTGCLEG 70
           +  G LEG
Sbjct: 62 KQNAGMLEG 67

[Close]

BLAST of HG10000613 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.8e-09
Identity = 44/85 (51.76%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------AAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PAYGPQYTQPP---PKNETTGCLEG 70
          P Y PQY  PP    +  + G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]

BLAST of HG10000613 vs. ExPASy TrEMBL
Match: A0A0A0LJA6 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271480 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.8e-29
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY-PPPPPPPAYGPQYTQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY PPPPPPP Y PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEG 70
          KNETTGCLEG
Sbjct: 61 KNETTGCLEG 70

[Close]

BLAST of HG10000613 vs. ExPASy TrEMBL
Match: A0A6J1G5R9 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451063 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.7e-28
Identity = 65/76 (85.53%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQY---TQP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP Y PQY   TQ 
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPKNETTGCLEGWSVT 74
          PP  + TGCLEGWSVT
Sbjct: 61 PPPKDKTGCLEGWSVT 76

[Close]

BLAST of HG10000613 vs. ExPASy TrEMBL
Match: A0A1S3C5S7 (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103497359 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.7e-28
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGY-PPPPPPPAYGPQYTQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYPAAQGY PPPPPPP Y PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEG 70
          KNE+TGCLEG
Sbjct: 61 KNESTGCLEG 70

[Close]

BLAST of HG10000613 vs. ExPASy TrEMBL
Match: A0A6J1G5U7 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451063 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.5e-25
Identity = 61/72 (84.72%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQY---TQP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP Y PQY   TQ 
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPKNETTGCLEG 70
          PP  + TGCLEG
Sbjct: 61 PPPKDKTGCLEG 72

[Close]

BLAST of HG10000613 vs. ExPASy TrEMBL
Match: A0A6J1L666 (cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita maxima OX=3661 GN=LOC111499542 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.2e-23
Identity = 58/72 (80.56%), Postives = 59/72 (81.94%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPAYGPQY---TQP 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP Y PQY   TQ 
Sbjct: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPKNETTGCLEG 70
          P   + TGCLEG
Sbjct: 61 PTPKDKTGCLEG 72

[Close]

BLAST of HG10000613 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-11
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 0


Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPA---AQGYPPPPPPPAYGPQYTQPPPK 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP   PQY+Q P +
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQYSQAPQQ 61

Query: 64 NETTGCLEG 70
           +  G LEG
Sbjct: 62 KQNAGMLEG 67

[Close]

BLAST of HG10000613 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 60.5 bits (145), Expect = 6.9e-10
Identity = 44/85 (51.76%), Postives = 48/85 (56.47%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------AAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PAYGPQYTQPP---PKNETTGCLEG 70
          P Y PQY  PP    +  + G LEG
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEG 83

[Close]

BLAST of HG10000613 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 7.2e-07
Identity = 39/71 (54.93%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGY-PVQGYPAAQ----GYPP---PPPPPAYG- 60
          MSY D Q  PV APPPQG+PPK+ YPP GY P  GYP  Q    GYPP   PPP   YG 
Sbjct: 1  MSYQDPQH-PVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQ 60

The following BLAST results are available for this feature:

BLAST of HG10000613 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649307.1	1.8e-28	94.29	cysteine-rich and transmembrane domain-containing protein WIH1 [Cucumis sativus]...	[more]
KAG7035191.1	1.2e-27	85.53	hypothetical protein SDJN02_01986, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022947084.1	1.2e-27	85.53	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [...	[more]
XP_008457737.2	1.2e-27	91.43	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_038901964.1	2.6e-27	91.55	cysteine-rich and transmembrane domain-containing protein WIH1-like [Benincasa h...	[more]

BLAST of HG10000613 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJW3	5.2e-10	57.97	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]
Q8S8M0	9.8e-09	51.76	Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th...	[more]

BLAST of HG10000613 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA6	8.8e-29	94.29	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271480 PE=3 ...	[more]
A0A6J1G5R9	5.7e-28	85.53	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 O...	[more]
A0A1S3C5S7	5.7e-28	91.43	cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A6J1G5U7	3.5e-25	84.72	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X2 O...	[more]
A0A6J1L666	7.2e-23	80.56	cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita...	[more]

BLAST of HG10000613 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67600.1	3.7e-11	57.97	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT2G41420.1	6.9e-10	51.76	proline-rich family protein	[more]
AT3G49845.1	7.2e-07	54.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..65
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..55
None	No IPR available	PANTHER	PTHR31568:SF102	SUBFAMILY NOT NAMED	coord: 1..74
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000613.1	HG10000613.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane