HG10000608 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000608
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr09: 6939407 .. 6942736 (-)
RNA-Seq ExpressionHG10000608
SyntenyHG10000608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAAAATACATCGAGGTGGAAGCCAAGGCGATATTTGACGAAGTTCAAAAGCAATTGGACTAAGAAAAGGGTGAAACACAAGTTAAAACCACACGTCAAGGCTGAAGTTGAGGTCGAGATCAAGACTCCTAGTTTGATAAGAGGGGCATGTCCAATAATACATGCCCTGACTTTGGAGGAGAGGACAATTTCGGCCAAATACCCAAATTTTCCTAAGTCGAGGTCGAGGCTCCCATTTTGGTAAATGGGGCATCCCCAATGCATACCTAACATATGTGACTCAACATTCAACCTAGCTAATCCTATTAAGAACCCTAATTTGACTGTCTTAGGTCAAACTTTTCTTATGAATACATCATTACGACTCCAAGAGAAGTAAGTCAATTCTCACTCTCAAATCTTAAATCTTCCATACTATTTCACTCTCTAATTTAAACATCAGAGTATGTAGAGGCAAGCATCACGTCGGTTTGCATGTTTTTTTTTCTTTTGCAAGTGACGTTCTTCCCTCCTCCAAATAAATTTACATGAAGATCAGTACAAATGACGTAGAAAAAAAAAATTCTTTATATATATAAATGGTGCTAGGTGGTAGTAAATAAATACCTTGACGTCAGTACGAGTACGAGTTTTAAACTTTTGTAATTCCAAAAAAAAATAATAACAATAAATATTCCGTAAAAAAATATTAATAAAGCTCCATTAAGAAAGTATTAACTTTTAATTCTCTAATGACAAGAATCAGCCGCACGTGCCAAACTTTGTCTCACTCTGACAAATGAATCCAAGGATCATACGTGTACACGTGGCGCGTGGATGCAACCGATCTTACAGCGTGTACAATCCGCAGGCCGTTAAAACTTTCAACTAAACTAACTGCCGTTTATTTAGTTAATAATAATTATTTTTAATATCCAACCTGCCGTTTATGCAAACGTGAAATATTGGGGTCCACGCCTCACGCGCCTCCCTTGACAATCAATTTGCCACCACTGTTCACCATCCACCTGGCATTTTCGGTGGGCCCCACCTTGGCTGATTTTTCTATTTTTTTGCCAGTAACACACTTTGACACTTGTATCAAATCTATTCCAATAGTTTTATACATTATTAATTAATATATTTATATTATTTAAGAAAGAAACAGTCCATTTATACTCTAAATTATTGAGAGGTTTAAGTCTATTTCTTGTGTGACTTAAATTTATACCCTATATTAAATTTTATAACTTAAATTTAAATTTTTTTTAAGGATCTCAATTTGTACTCTCTGTTAATGTTGGAGAAAATTAATATATAAAAACTGAGTATACTAGCAAACTGATTATACCTCAATTAGAAATTAGAAACAGTACACTCAATATATAATATTCAAACTCAGAATGGTATAACAAGGCTTAGATATGGAAATAACCATAGACTTGAAAAAACCTCAAAACCTTTGAAAATTCAAAATGTAGTCGAGACACGTTTCTGATAAGCGTTATCCTGAAGACAATTATTCGATTTGCACAGGCTGCAAGCAAACTACAATGATCGTCCCAGCAGTATACTATGATTAACTCCGATAGAATTGTAACCTTGAACTACTCGAATTTGATAGAACTCTTGGATACTTGCTCTCAACTCAACTCAAGATGAAAAGAAAAAAAGAATGAGGAGAACTATTCAATTTGAAGTGAGATGCTACAAATGAAGAAACAAGTTACTATTTATAGGCTAGCAACTTAGTAACTCTCCAAAATATAAAATGAAATCAAATAAATATAAAAATTAAAACATTTGTCAAAGTTAACTCAATTATTGAGTTGTTACTTGATCAAAATCAACCACAACTTATTCAAATAGAAGAAATTACAAATTTAACTTTCATACATGTTAAATTTATATATGAAACATTATCTTAATTTGATGGTTTCAATCCAATTTAAAATTTATAACAATGAATTTAATCTACACAATTAAATCTCTTTTTATGTTTCAAATATTACAAAAGTTTCACTTTCTTTCCGGCTAAACTTATAGTTGTTGGTGTCTCATTTATCAATTTTATCAATATGATTGATAATACATAAAAAGTATATAGAAAAGTTTTTATATTGTAGACTACATATTTCTTCATTTTAAGTACTCGTACATTGTGTGGGTTTGGGATTTAAATTAAAAAGTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATAGAGATGTAAAAAGATATTCACATGGTCAATTATTTTGTTTTATTTTATGAAAATAGAAAAAAAATTGTTTTCATTCCTTAGACAATAATGCTCTAAAATTTCAATTTGGCTAGTGAGGCTTCTTGTATTATATATGATCATAATTCTATTTTTAAAATTTAAAATGCTTGTGGTATTTTCTTTAGTTTAATTCTTTTATTTTATTGGAAAGTCATTTTCTTGTTAAAAAGACAAAAAAAAAAAAAAAAAAAAAAACTTTTTTAACAAGGACAATTTATATAGGAACGTAATCTTTTAAAAAAAAGTACAAATATTTTATCTTAATGCCATAAATCACATCACTTTTTTTTGAAAGATATTTACCTATTGAATTAAAAAACAAAAAGGAAAATGCCACCATAAAGTTAAATCCCTACTCGACCATTTCTTTCCTTTCCTTTTTTTTTATTTAATTTTTAATTTATAAAAATTGTCACAAAGTCTAGGTGGACCATTCGAAAACGATGCCACGTGTCAATAAGCAAAAACATTATAAATATTTCACCAAATAAAGCGGAATAAATTTCCAACCAACCATATGCATCCACAAATCATAATATTATATAACATTACAAAATAAATCTCAGTTTTAATTACACATCACTACACTGATCACCCCCAAGGAAAATACTGGGAAAATTACATAAACATTTTTTTAAAAAAGAAAAAGAAAAAGAAAAGAAAAAACTATATTTTGTTTTTTTTTTAAATAAAAAAAATAAATCAAAGTTTCTGTTTCTATCCGCCAGTCAACTGGAAGCTTCATCGGAATCTAATATTCTCCGTCGACGATTACCACCGGCGGACTCCGGCGACGACAGCGACAAGCCACTCGATGCATCCGAAACCTTGCTTCTTGAGATTGTGGAAAAAGGTGCGGTCACCGGCGGCAGGCGGCGTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACGAGGGGGTTCTTGATGGGGAGTTCGTCCCAGGCGGTGGCGACGGCGGCGGAGGGGGGCGGCGAGGGGGAGTCCGAGAGGAGGTCTTTGAGACTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCCAATTCCGATGA

mRNA sequence

ATGTTAAAAAATACATCGAGGTGGAAGCCAAGGCGATATTTGACGAAGTTCAAAAGCAATTGGACTAAGAAAAGGGTGAAACACAAGTTAAAACCACACGTCAAGGCTGAAGTTGAGGTCGAGATCAAGACTCCTAGTTTGATAAGAGGGGCATGTCCAATAATACATGCCCTGACTTTGGAGGAGAGGACAATTTCGGCCAAATACCCAAATTTTCCTAAGTCGAGGTCGAGGCTCCCATTTTGTCAACTGGAAGCTTCATCGGAATCTAATATTCTCCGTCGACGATTACCACCGGCGGACTCCGGCGACGACAGCGACAAGCCACTCGATGCATCCGAAACCTTGCTTCTTGAGATTGTGGAAAAAGGTGCGGTCACCGGCGGCAGGCGGCGTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACGAGGGGGTTCTTGATGGGGAGTTCGTCCCAGGCGGTGGCGACGGCGGCGGAGGGGGGCGGCGAGGGGGAGTCCGAGAGGAGGTCTTTGAGACTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCCAATTCCGATGA

Coding sequence (CDS)

ATGTTAAAAAATACATCGAGGTGGAAGCCAAGGCGATATTTGACGAAGTTCAAAAGCAATTGGACTAAGAAAAGGGTGAAACACAAGTTAAAACCACACGTCAAGGCTGAAGTTGAGGTCGAGATCAAGACTCCTAGTTTGATAAGAGGGGCATGTCCAATAATACATGCCCTGACTTTGGAGGAGAGGACAATTTCGGCCAAATACCCAAATTTTCCTAAGTCGAGGTCGAGGCTCCCATTTTGTCAACTGGAAGCTTCATCGGAATCTAATATTCTCCGTCGACGATTACCACCGGCGGACTCCGGCGACGACAGCGACAAGCCACTCGATGCATCCGAAACCTTGCTTCTTGAGATTGTGGAAAAAGGTGCGGTCACCGGCGGCAGGCGGCGTGAGCATGGGCTGAAGGTAGGCCAAGGCGGCGTGTTTGACGAGGGGGTTCTTGATGGGGAGTTCGTCCCAGGCGGTGGCGACGGCGGCGGAGGGGGGCGGCGAGGGGGAGTCCGAGAGGAGGTCTTTGAGACTGGTGTAGGATTGAAGAGGGGTCATTTCGATGTCGGAGAATTCCAATTCCGATGA

Protein sequence

MLKNTSRWKPRRYLTKFKSNWTKKRVKHKLKPHVKAEVEVEIKTPSLIRGACPIIHALTLEERTISAKYPNFPKSRSRLPFCQLEASSESNILRRRLPPADSGDDSDKPLDASETLLLEIVEKGAVTGGRRREHGLKVGQGGVFDEGVLDGEFVPGGGDGGGGGRRGGVREEVFETGVGLKRGHFDVGEFQFR
Homology
[Close]
BLAST of HG10000608 vs. NCBI nr
Match: KGN62004.2 (hypothetical protein Csa_005914 [Cucumis sativus])

HSP 1 Score: 109.0 bits (271), Expect = 4.6e-20
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 0 

Query: 104 DDSDKPLDASETLLLEIVEKGAVTGGRRREHGLKVGQGGVFDEGVLDGEFVPGGGDGGGG 163
           DD  +PLDA++T+LLE  EKG V GG   EHGLKVG+GGVFD+ VLDGE V G G GGG 
Sbjct: 2   DDGGEPLDATKTVLLEDTEKGRVGGGGWGEHGLKVGEGGVFDKRVLDGELVEGWG-GGGW 61

Query: 164 GRRGGVREEVFETGVGLKRGHFD-VGEF 191
           GRR GV EEVFE GVGLKRGHFD VGEF
Sbjct: 62  GRRRGVGEEVFEAGVGLKRGHFDVVGEF 88

The following BLAST results are available for this feature:
BLAST of HG10000608 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62004.24.6e-2071.59hypothetical protein Csa_005914 [Cucumis sativus][more]
BLAST of HG10000608 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10000608 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10000608 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000608.1HG10000608.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
cellular_component GO:0000421 autophagosome membrane