HG10000584 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000584
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Poly(A)-specific ribonuclease
Location	Chr09: 6672871 .. 6673474 (-)
RNA-Seq Expression	HG10000584
Synteny	HG10000584

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTAGAAGAAATCGAAGACTTCCCAGAAGAGAACCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTTCAAATTCGACGAATGCCTTAAATTCCACTCGATTCTGACTATCGACACTGAATTTCCTGGGTTTATCAGAAAATCCCCTTGGGGTTCGATTGAAGAAGCAATTTATGATGATTTCCGATTCAATGTGAACCAAACGAAACTGATTCAATTGGGTATTACGGCTTCTGATGATTCGGGTCAAATCGGCGGTTCATGGGAGTTCAATTTTTCCGATTTCGACTCAGAAACCGACGCTCAAGGTCCTTCCTCTGTTTCCTTTCTTGAACAAAACGGTTTGAATTTCCAAAAATTGAAGAAAGATGGAATACCCATTAGATTATTCACTGCGAATTTCTTAAGTATCATACGAAAACATAATGTTTTCAGATGGGTTACCTTCCATGGGCTATACGATTCGGGTATTTGTTAAAAGCCATGGGTTTAATCGCCGTCTTACCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGAATGGACGGGGAATTGTGAGGGATTTGAAACATATGGCTCGATTTTGTGA

mRNA sequence

ATGGGTAGAAGAAATCGAAGACTTCCCAGAAGAGAACCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTTCAAATTCGACGAATGCCTTAAATTCCACTCGATTCTGACTATCGACACTGAATTTCCTGGGTTTATCAGAAAATCCCCTTGGGGTTCGATTGAAGAAGCAATTTATGATGATTTCCGATTCAATGTGAACCAAACGAAACTGATTCAATTGGGTATTACGGCTTCTGATGATTCGGGTCAAATCGGCGGTTCATGGGAGTTCAATTTTTCCGATTTCGACTCAGAAACCGACGCTCAAGATGGGTTACCTTCCATGGGCTATACGATTCGGGTATTTGTTAAAAGCCATGGGTTTAATCGCCGTCTTACCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGAATGGACGGGGAATTGTGAGGGATTTGAAACATATGGCTCGATTTTGTGA

Coding sequence (CDS)

ATGGGTAGAAGAAATCGAAGACTTCCCAGAAGAGAACCTTTGATCCGACAAGTTTGGGCTTCGAATTTCGATTCCGAAATCTTCAAATTCGACGAATGCCTTAAATTCCACTCGATTCTGACTATCGACACTGAATTTCCTGGGTTTATCAGAAAATCCCCTTGGGGTTCGATTGAAGAAGCAATTTATGATGATTTCCGATTCAATGTGAACCAAACGAAACTGATTCAATTGGGTATTACGGCTTCTGATGATTCGGGTCAAATCGGCGGTTCATGGGAGTTCAATTTTTCCGATTTCGACTCAGAAACCGACGCTCAAGATGGGTTACCTTCCATGGGCTATACGATTCGGGTATTTGTTAAAAGCCATGGGTTTAATCGCCGTCTTACCGGAATCAATGGAGGAATTCGCGACGGTGGTGGTGAATGGACGGGGAATTGTGAGGGATTTGAAACATATGGCTCGATTTTGTGA

Protein sequence

MGRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFNRRLTGINGGIRDGGGEWTGNCEGFETYGSIL

Homology

[Close]

BLAST of HG10000584 vs. NCBI nr
Match: XP_038877840.1 (putative CCR4-associated factor 1 homolog 8, partial [Benincasa hispida])

HSP 1 Score: 199.5 bits (506), Expect = 2.1e-47
Identity = 96/107 (89.72%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MGRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEE 60
           MGRRNR  PRREPLIRQVWASNFDSEI KFDECL+ HSIL+IDTEFPGFIRKSP GSIEE
Sbjct: 1   MGRRNRARPRREPLIRQVWASNFDSEISKFDECLRLHSILSIDTEFPGFIRKSPRGSIEE 60

Query: 61  AIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQ 108
           AIYDDFRFNVNQTKLIQLGITA DDSG IGG+WEFNFSDFDSE DAQ
Sbjct: 61  AIYDDFRFNVNQTKLIQLGITACDDSGHIGGTWEFNFSDFDSEADAQ 107

[Close]

BLAST of HG10000584 vs. NCBI nr
Match: XP_031736916.1 (putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypothetical protein Csa_006644 [Cucumis sativus])

HSP 1 Score: 172.2 bits (435), Expect = 3.6e-39
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 2   GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEA 61
           GR   R  R +PLIRQVWASNFDSEI +FDECL+FH+ILTIDTEFPGFI +SP GSI++ 
Sbjct: 3   GRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDE 62

Query: 62  IYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDA 107
           +Y DF FNVNQTKLIQLGITASDD GQIGGSWEFNFSDFD E DA
Sbjct: 63  LYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADA 107

[Close]

BLAST of HG10000584 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-38
Identity = 75/97 (77.32%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 11  REPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNV 70
           R+ LI +VWASNFD+EI K +ECL+FH+I++IDTEFPGFIR SPWGSI+E +Y+DFRFNV
Sbjct: 7   RKSLIHKVWASNFDAEISKLEECLEFHTIVSIDTEFPGFIRNSPWGSIDETLYEDFRFNV 66

Query: 71  NQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQ 108
           NQTKLIQLG+TA DDSG+IGGSWEFNFSDFD E DAQ
Sbjct: 67  NQTKLIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQ 103

[Close]

BLAST of HG10000584 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-36
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIE 60
           MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQD 109
           E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSDFD + D Q+
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQN 109

[Close]

BLAST of HG10000584 vs. NCBI nr
Match: XP_023533171.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-36
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIE 60
           MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+
Sbjct: 1   MGRRNRARPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQD 109
           E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSDFD + D Q+
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQN 109

[Close]

BLAST of HG10000584 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 12  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVN 71
           +PL R+VW SN D E+ +  ECLK   ++  DTE+PG I ++ + S  +  Y   + NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 72  QTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFNRRLT 131
            TKLIQ G T  +  G+IGG WE NFS+F   +D ++ L         F++ HG + +  
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSI------EFLRRHGLDLQ-- 125

Query: 132 GINGGIRDGGGEWTG 147
                IRD G +  G
Sbjct: 126 ----KIRDEGVDMFG 128

[Close]

BLAST of HG10000584 vs. ExPASy Swiss-Prot
Match: Q9C6M9 (Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=CAF1-4 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-14
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFNRRLTGING 136
           QLG T  D  G I  +WE N SDF+     ++           F+KS+G N    G  G
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSI------AFLKSNGLNLDKIGEEG 114

[Close]

BLAST of HG10000584 vs. ExPASy Swiss-Prot
Match: Q9SFX6 (Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CAF1-3 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFN 128
           QLG T  D  G    +WE N SDFD     ++           F+KS+G N
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSI------AFLKSNGLN 111

[Close]

BLAST of HG10000584 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.7e-13
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 31  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIG 90
           ++CL+ +  + IDTEFP  +R++   + +E  Y D  F+V++ KLIQLG+T  D +G+IG
Sbjct: 5   EDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIG 64

Query: 91  GSWEFNFSDF 101
           G+WE NFSDF
Sbjct: 65  GTWEINFSDF 74

[Close]

BLAST of HG10000584 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-12
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N  +E+    +CLK  + + IDTEFPG ++++P  + +E  Y D +FNV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGITASDDSGQIGGSWEFNFSDFD 102
           QLG+T       I  +WE N SDF+
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFN 86

[Close]

BLAST of HG10000584 vs. ExPASy TrEMBL
Match: A0A0A0LPP0 (Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 82/105 (78.10%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 2   GRRNRRLPRREPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEA 61
           GR   R  R +PLIRQVWASNFDSEI +FDECL+FH+ILTIDTEFPGFI +SP GSI++ 
Sbjct: 3   GRNQTRSTREKPLIRQVWASNFDSEIARFDECLRFHTILTIDTEFPGFIAQSPRGSIDDE 62

Query: 62  IYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDA 107
           +Y DF FNVNQTKLIQLGITASDD GQIGGSWEFNFSDFD E DA
Sbjct: 63  LYKDFCFNVNQTKLIQLGITASDDLGQIGGSWEFNFSDFDFEADA 107

[Close]

BLAST of HG10000584 vs. ExPASy TrEMBL
Match: A0A6J1G7L2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.4e-36
Identity = 74/109 (67.89%), Postives = 90/109 (82.57%), Query Frame = 0


Query: 1   MGRRNRRLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIE 60
           MGRRNR  PRR  P I++VWASNFD EI + + CL+ + IL+IDTEFPG IR +PWGSI+
Sbjct: 1   MGRRNRERPRRRTPSIQEVWASNFDHEILRLERCLQANHILSIDTEFPGCIRSTPWGSID 60

Query: 61  EAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQD 109
           E +Y+D RFNVNQTKLIQLG+TASD+SGQ+ GSWEFNFSDFD + D Q+
Sbjct: 61  ERVYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQN 109

[Close]

BLAST of HG10000584 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.9e-36
Identity = 79/108 (73.15%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MGRRNRRLPRR--EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSI 60
           MG RN+   RR  +P IRQVWASNF+SEI +FDECL+FH+ILTIDTEFPGFI +SP  SI
Sbjct: 1   MGGRNQTRSRRSKKPFIRQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSI 60

Query: 61  EEAIYDDFRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDA 107
           +E IY +FRFNVNQ KLIQLGITAS+D GQIGGSWEFNFSDFD + D+
Sbjct: 61  DEEIYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDS 108

[Close]

BLAST of HG10000584 vs. ExPASy TrEMBL
Match: A0A1S4E611 (Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC107992290 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 2.5e-33
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 16  RQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKL 75
           RQVWASNF+SEI +FDECL+FH+ILTIDTEFPGFI +SP  SI+E IY +FRFNVNQ KL
Sbjct: 1   RQVWASNFNSEITQFDECLRFHTILTIDTEFPGFIIQSPRDSIDEEIYKNFRFNVNQMKL 60

Query: 76  IQLGITASDDSGQIGGSWEFNFSDFDSETDA 107
           IQLGITAS+D GQIGGSWEFNFSDFD + D+
Sbjct: 61  IQLGITASNDFGQIGGSWEFNFSDFDFQVDS 91

[Close]

BLAST of HG10000584 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.0e-31
Identity = 66/103 (64.08%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 7   RLPRRE-PLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDD 66
           R PR + PLIR+VWA N D EI + D CL  +SI++IDTEFPG I+++PWG+ +E +Y D
Sbjct: 6   RGPRGDNPLIREVWAYNLDHEIIRLDRCLLSYSIMSIDTEFPGCIKRTPWGTFDEELYAD 65

Query: 67  FRFNVNQTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQD 109
           FRFNVNQTK+IQLG+T SD+SG IGG+WEFNFSDFD E DA +
Sbjct: 66  FRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHN 108

[Close]

BLAST of HG10000584 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-18
Identity = 50/135 (37.04%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 12  EPLIRQVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVN 71
           +PL R+VW SN D E+ +  ECLK   ++  DTE+PG I ++ + S  +  Y   + NV 
Sbjct: 6   QPLARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSSDECYRAMKGNVE 65

Query: 72  QTKLIQLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFNRRLT 131
            TKLIQ G T  +  G+IGG WE NFS+F   +D ++ L         F++ HG + +  
Sbjct: 66  NTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSI------EFLRRHGLDLQ-- 125

Query: 132 GINGGIRDGGGEWTG 147
                IRD G +  G
Sbjct: 126 ----KIRDEGVDMFG 128

[Close]

BLAST of HG10000584 vs. TAIR 10
Match: AT1G27890.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-15
Identity = 46/119 (38.66%), Postives = 64/119 (53.78%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LI
Sbjct: 3   EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 62

Query: 77  QLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFNRRLTGING 136
           QLG T  D  G I  +WE N SDF+     ++           F+KS+G N    G  G
Sbjct: 63  QLGFTLFDRRG-ITKTWEINLSDFNEHKCFKNDKSI------AFLKSNGLNLDKIGEEG 114

[Close]

BLAST of HG10000584 vs. TAIR 10
Match: AT1G27820.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-15
Identity = 44/111 (39.64%), Postives = 61/111 (54.95%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N + E+    +CLK  S + IDTEFPG ++++P  + EE  Y D +FNV+ T LI
Sbjct: 8   EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRDMKFNVDNTHLI 67

Query: 77  QLGITASDDSGQIGGSWEFNFSDFDSETDAQDGLPSMGYTIRVFVKSHGFN 128
           QLG T  D  G    +WE N SDFD     ++           F+KS+G N
Sbjct: 68  QLGFTLFDRRG-FAKTWEINLSDFDEHKCFKNDKSI------AFLKSNGLN 111

[Close]

BLAST of HG10000584 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-14
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 0


Query: 31  DECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLIQLGITASDDSGQIG 90
           ++CL+ +  + IDTEFP  +R++   + +E  Y D  F+V++ KLIQLG+T  D +G+IG
Sbjct: 5   EDCLRSYRFIAIDTEFPSTLRETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRIG 64

Query: 91  GSWEFNFSDF 101
           G+WE NFSDF
Sbjct: 65  GTWEINFSDF 74

[Close]

BLAST of HG10000584 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-13
Identity = 35/85 (41.18%), Postives = 52/85 (61.18%), Query Frame = 0


Query: 17  QVWASNFDSEIFKFDECLKFHSILTIDTEFPGFIRKSPWGSIEEAIYDDFRFNVNQTKLI 76
           +VW  N  +E+    +CLK  + + IDTEFPG ++++P  + +E  Y D +FNV+ T LI
Sbjct: 4   EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRDMKFNVDNTHLI 63

Query: 77  QLGITASDDSGQIGGSWEFNFSDFD 102
           QLG+T       I  +WE N SDF+
Sbjct: 64  QLGLTLFGKG--ITKTWEINLSDFN 86

The following BLAST results are available for this feature:

BLAST of HG10000584 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877840.1	2.1e-47	89.72	putative CCR4-associated factor 1 homolog 8, partial [Benincasa hispida]	[more]
XP_031736916.1	3.6e-39	78.10	putative CCR4-associated factor 1 homolog 8 [Cucumis sativus] >KGN61926.1 hypoth...	[more]
XP_038895744.1	4.0e-38	77.32	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
XP_022947867.1	4.9e-36	67.89	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]
XP_023533171.1	6.4e-36	67.89	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10000584 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	1.8e-17	37.04	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9C6M9	1.4e-14	38.66	Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SFX6	1.9e-14	39.64	Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	2.7e-13	47.14	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	5.2e-12	41.18	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of HG10000584 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPP0	1.8e-39	78.10	Poly(A)-specific ribonuclease OS=Cucumis sativus OX=3659 GN=Csa_2G270190 PE=3 SV...	[more]
A0A6J1G7L2	2.4e-36	67.89	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3...	[more]
A0A5A7TRG1	6.9e-36	73.15	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S4E611	2.5e-33	78.02	Poly(A)-specific ribonuclease OS=Cucumis melo OX=3656 GN=LOC107992290 PE=3 SV=1	[more]
A0A6J1G7T4	1.0e-31	64.08	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]

BLAST of HG10000584 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	1.3e-18	37.04	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27890.1	1.0e-15	38.66	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G27820.1	1.3e-15	39.64	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	1.9e-14	47.14	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	3.7e-13	41.18	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..129 e-value: 1.7E-20 score: 75.1
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 13..107
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 13..107
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 11..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000584.1	HG10000584.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006402	mRNA catabolic process
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
cellular_component	GO:0030014	CCR4-NOT complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity