HG10000455 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000455
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Encodes a protein of unknown function that is a marker for oxidative stress response.
Location	Chr09: 5373939 .. 5374314 (-)
RNA-Seq Expression	HG10000455
Synteny	HG10000455

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAACAGAAAGAGCAACCATCAACTGCTGCAAACCCACCCATTCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCACGCGTCAATGGACGAACACAAATCATGCTTCAAGAAGACTATCGACAAGGTTTACTTCCATATTCTTCTCTGAGCATCTAAAAGGAATAAAATCATGTTTCTGAGATATGTGGTGGATGTATTTGCTAACAAATTCAAAAAATTTTGGTTGGTTACAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGAAATTCAGAGACGAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

mRNA sequence

ATGGAACAACAGAAAGAGCAACCATCAACTGCTGCAAACCCACCCATTCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCACGCGTCAATGGACGAACACAAATCATGCTTCAAGAAGACTATCGACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGAAATTCAGAGACGAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Coding sequence (CDS)

ATGGAACAACAGAAAGAGCAACCATCAACTGCTGCAAACCCACCCATTCCTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGATTTGAAGGATCACATCGACGAGTTCATTCACGCGTCAATGGACGAACACAAATCATGCTTCAAGAAGACTATCGACAAGATGTTCCGTATGTCAAAAGTTGTGGCAGATAGAAATTCAGAGACGAGTGGAGTTGAAAGTTCTCTGCCTCTTCGAACAACAGTATCAGAATAA

Protein sequence

MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMFRMSKVVADRNSETSGVESSLPLRTTVSE

Homology

[Close]

BLAST of HG10000455 vs. NCBI nr
Match: XP_008460939.1 (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. NCBI nr
Match: KAA0045538.1 (uncharacterized protein E6C27_scaffold243G00290 [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 2.2e-38
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
           MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 53  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 112

Query: 61  RMSKVVADRNSETSGVESSLPLRTTVSE 89
           RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 113 RMSKVVADRNSETNGVESSLPLRTTVSE 140

[Close]

BLAST of HG10000455 vs. NCBI nr
Match: XP_023006871.1 (uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023533150.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533151.1 uncharacterized protein LOC111795127 [Cucurbita pepo subsp. pepo] >XP_023533869.1 uncharacterized protein LOC111795589 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 8.5e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. NCBI nr
Match: KAG6605077.1 (Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 8.5e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1   MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
           MEQQKE+PS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 279 MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 338

Query: 61  RMSKVVADRNSETSGVESSLPLRTTVSE 89
           RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 339 RMSKVVADKNSETSGVESSLPLRTTVSE 366

[Close]

BLAST of HG10000455 vs. NCBI nr
Match: XP_004148843.1 (uncharacterized protein LOC101211034 [Cucumis sativus] >KGN61795.1 hypothetical protein Csa_006035 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.5e-37
Identity = 84/88 (95.45%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. ExPASy TrEMBL
Match: A0A5A7TRS7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00290 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1   MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
           MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 53  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 112

Query: 61  RMSKVVADRNSETSGVESSLPLRTTVSE 89
           RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 113 RMSKVVADRNSETNGVESSLPLRTTVSE 140

[Close]

BLAST of HG10000455 vs. ExPASy TrEMBL
Match: A0A1S3CDL9 (uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.1e-38
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. ExPASy TrEMBL
Match: A0A6J1KX05 (uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.1e-38
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PS AANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSAAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. ExPASy TrEMBL
Match: A0A0A0LIQ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247070 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 7.0e-38
Identity = 84/88 (95.45%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVADRNSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. ExPASy TrEMBL
Match: A0A6J1G5B9 (uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC111450996 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          MEQQKE+PS AANPPI SCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI+KMF
Sbjct: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADRNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSETSGVESSLPLRTTVSE
Sbjct: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 88

[Close]

BLAST of HG10000455 vs. TAIR 10
Match: AT4G39235.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 105.9 bits (263), Expect = 1.7e-23
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 7  QPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMFRMSKVV 66
          Q + +  P + SCRKK  ++ATF ED+KDHID+FIHASMDEHKSCF+KTI KMF +SK V
Sbjct: 4  QTNQSPKPAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAV 63

Query: 67 ADRNS-ETSGVESSLPLRTTVSE 89
          A++ + E  GVES LPL+TTVSE
Sbjct: 64 AEKQAVEAKGVESQLPLQTTVSE 86

[Close]

BLAST of HG10000455 vs. TAIR 10
Match: AT3G05570.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39235.1); Has 73 Blast hits to 73 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-22
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0


Query: 1  MEQQKEQPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKMF 60
          ME QK Q      P   SCRKK  ++A FLED+KDHID+FI+ASMD+HK+CF KTI KMF
Sbjct: 1  METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 61 RMSKVVADRNSETS--GVESSLPLRTTVSE 89
           +SK VAD+    +  GVES LPL+TTVS+
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

[Close]

BLAST of HG10000455 vs. TAIR 10
Match: AT2G21640.1 (Encodes a protein of unknown function that is a marker for oxidative stress response. )

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-14
Identity = 44/86 (51.16%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 13  NPPIP-----SCRKK-KNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTIDKM---FRMS 72
           NPP P     SCRK+ K++ ATF  +LKDH+DEFIHASMDEHK+CFK T+DK+   F  +
Sbjct: 19  NPPKPQVPASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKA 78

Query: 73  KVVADRNSETSG-VESSLPLRTTVSE 89
           + VA++  E    VE   PL+T V++
Sbjct: 79  EAVAEKQIEAKEVVEIHSPLQTAVTK 104

The following BLAST results are available for this feature:

BLAST of HG10000455 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460939.1	2.2e-38	96.59	PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo]	[more]
KAA0045538.1	2.2e-38	96.59	uncharacterized protein E6C27_scaffold243G00290 [Cucumis melo var. makuwa]	[more]
XP_023006871.1	8.5e-38	95.45	uncharacterized protein LOC111499535 [Cucurbita maxima] >XP_023006872.1 uncharac...	[more]
KAG6605077.1	8.5e-38	95.45	Epoxide hydrolase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_004148843.1	1.5e-37	95.45	uncharacterized protein LOC101211034 [Cucumis sativus] >KGN61795.1 hypothetical ...	[more]

BLAST of HG10000455 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10000455 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRS7	1.1e-38	96.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CDL9	1.1e-38	96.59	uncharacterized protein LOC103499674 OS=Cucumis melo OX=3656 GN=LOC103499674 PE=...	[more]
A0A6J1KX05	4.1e-38	95.45	uncharacterized protein LOC111499535 OS=Cucurbita maxima OX=3661 GN=LOC111499535...	[more]
A0A0A0LIQ4	7.0e-38	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247070 PE=4 SV=1	[more]
A0A6J1G5B9	3.5e-37	94.32	uncharacterized protein LOC111450996 OS=Cucurbita moschata OX=3662 GN=LOC1114509...	[more]

BLAST of HG10000455 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39235.1	1.7e-23	63.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G05570.1	4.1e-22	58.89	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G21640.1	3.1e-14	51.16	Encodes a protein of unknown function that is a marker for oxidative stress resp...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR33622:SF10	DIPEPTIDE TRANSPORT ATP-BINDING PROTEIN DPPF	coord: 3..88
None	No IPR available	PANTHER	PTHR33622	FAMILY NOT NAMED	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000455.1	HG10000455.1	mRNA