HG10000403 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000403
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description60S ribosomal protein L34
LocationChr09: 4802773 .. 4803749 (+)
RNA-Seq ExpressionHG10000403
SyntenyHG10000403
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAGTCCAACCAGCACCGCGTCGTCAAAACCCCCGGTAAATTGACATTGTTCTTCTACCATGTTTTAGAAGCATTTTCTAAATTACATCTCTTATCATTCGTTGTTTTGTTGAATTTCTCGTATGCTTCTGCATTTATTTGCAAGATCTGGTCTCTGCTGCTTAATCGGTTGTTTGTGATTTGATTCTTAGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCTAAATGCCCTGTTACTGGAAAGAGGATTCAAGGGGTGCGTATACACATATTTTTTGTTTTGCCTTTTCTTATCATTAAATAAGTTAGCTTCGAAGCTGTAGATTTTAATTTTAATTTCTTTTTGGTTTCGTTTTCGAGTATTGGGTATTTTATGGAGTAATTTAAGTATATAGAGACGTGGGATTTTCTGTACATCGTAGTTAAACTTGATTTTGCGTATCTTCTTCCTGATTTCTTCGTATGTAACTAGTAGCCAAATGTTGGCTTACGGGGAGCCGGTGTTCTTGTTTTATTTTTCATTTTTTATCAAATTATGTTGAATTTTAGAACTGGTTCTCACAATATTTCCATCTGATTGATTGTTGATATTTGGTGTCATGTGGGTTTTGTTTTAACAGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGTTGGCCAGGAACCGCAGGACTGTAAACCGCCCCTATGGTGGTGTATTGTCTGGAGGGGCTGTTAGAGAGAGGTGTGTTTCTTTGATGTTCACCACTGCATTGCATTGTCATCCCAGTATAGACGGTTGCTTGATTATTTCTAAAGAACTTCTCTTAATGTTGTAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTGCCAAGAGCTAG

mRNA sequence

ATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAGTCCAACCAGCACCGCGTCGTCAAAACCCCCGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCTAAATGCCCTGTTACTGGAAAGAGGATTCAAGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGTTGGCCAGGAACCGCAGGACTGTAAACCGCCCCTATGGTGGTGTATTGTCTGGAGGGGCTGTTAGAGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTGCCAAGAGCTAG

Coding sequence (CDS)

ATGGTCCAGCGGCTCACTTACCGTAAGCGGCACAGCTATGCCACCAAGTCCAACCAGCACCGCGTCGTCAAAACCCCCGGTGGAAAGCTTGTGTACCAGACCACGAAGAAGAGGGCCAGTGGTCCTAAATGCCCTGTTACTGGAAAGAGGATTCAAGGGATTCCTCACTTGAGGCCTGCTGAATACAAGAGGTCTAGGTTGGCCAGGAACCGCAGGACTGTAAACCGCCCCTATGGTGGTGTATTGTCTGGAGGGGCTGTTAGAGAGAGGATTATAAGAGCTTTTTTGGTTGAAGAGCAAAAGATTGTGAAGAAGGTTTTGAAGATCCAGAAGGCAAAGGAAAAACTAGCTGCCAAGAGCTAG

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Homology
[Close]
BLAST of HG10000403 vs. NCBI nr
Match: XP_011070999.1 (60S ribosomal protein L34 [Sesamum indicum] >XP_011096271.1 60S ribosomal protein L34 [Sesamum indicum] >XP_020547315.1 60S ribosomal protein L34 isoform X1 [Sesamum indicum] >XP_020547316.1 60S ribosomal protein L34 isoform X2 [Sesamum indicum])

HSP 1 Score: 227.3 bits (578), Expect = 7.3e-56
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of HG10000403 vs. NCBI nr
Match: XP_038893923.1 (60S ribosomal protein L34-like [Benincasa hispida])

HSP 1 Score: 226.9 bits (577), Expect = 9.5e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of HG10000403 vs. NCBI nr
Match: KAG8366344.1 (hypothetical protein BUALT_Bualt17G0070100 [Buddleja alternifolia])

HSP 1 Score: 226.5 bits (576), Expect = 1.2e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRARHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of HG10000403 vs. NCBI nr
Match: XP_022134504.1 (60S ribosomal protein L34-like [Momordica charantia])

HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRPYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. NCBI nr
Match: XP_004138175.3 (60S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protein L34 [Momordica charantia] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_038878407.1 60S ribosomal protein L34-like [Benincasa hispida] >KAG6586008.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019300.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6587535.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG6589504.1 60S ribosomal protein L34, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021512.1 60S ribosomal protein L34 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match: P41098 (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-56
Identity = 114/120 (95.00%), Postives = 117/120 (97.50%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match: P40590 (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.8e-56
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK AAK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match: Q42351 (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match: Q9FE65 (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.2e-53
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match: Q9LJW6 (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.5e-53
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RTVNR YGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match: A0A6I9SPA1 (60S ribosomal protein L34 OS=Sesamum indicum OX=4182 GN=LOC105156538 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.5e-56
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match: A0A6J1BYX4 (60S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111006730 PE=3 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 7.8e-56
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNRPYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRPYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match: A0A6J1I6I6 (60S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match: A0A6J1HLN7 (60S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match: A0A6J1DF78 (60S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-55
Identity = 118/120 (98.33%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARNRRTVNR YGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of HG10000403 vs. TAIR 10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 213.0 bits (541), Expect = 1.3e-55
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of HG10000403 vs. TAIR 10
Match: AT1G69620.1 (ribosomal protein L34 )

HSP 1 Score: 210.3 bits (534), Expect = 8.6e-55
Identity = 108/119 (90.76%), Postives = 112/119 (94.12%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAK 120
           EYKRSRL+RNRRTVNR YGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of HG10000403 vs. TAIR 10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 2.5e-54
Identity = 108/120 (90.00%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRPYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120
           EYKRSRLARN RTVNR YGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of HG10000403 vs. TAIR 10
Match: AT1G26880.2 (Ribosomal protein L34e superfamily protein )

HSP 1 Score: 171.4 bits (433), Expect = 4.4e-43
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 0 

Query: 1  MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
          MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1  MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61 EYKRSRLARNRRTVNRPYGGVLSGGAVRERII 93
          EYKRSRL+RNRRTVNR YGGVLSG AVRER +
Sbjct: 61 EYKRSRLSRNRRTVNRAYGGVLSGSAVRERFV 92

The following BLAST results are available for this feature:
BLAST of HG10000403 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011070999.17.3e-5698.3360S ribosomal protein L34 [Sesamum indicum] >XP_011096271.1 60S ribosomal protei... [more]
XP_038893923.19.5e-5699.1760S ribosomal protein L34-like [Benincasa hispida][more]
KAG8366344.11.2e-5598.33hypothetical protein BUALT_Bualt17G0070100 [Buddleja alternifolia][more]
XP_022134504.11.6e-5597.5060S ribosomal protein L34-like [Momordica charantia][more]
XP_004138175.32.1e-5598.3360S ribosomal protein L34 [Cucumis sativus] >XP_022152880.1 60S ribosomal protei... [more]
BLAST of HG10000403 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P410981.5e-5695.0060S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1[more]
P405905.8e-5694.1760S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1[more]
Q423511.9e-5490.8360S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1[more]
Q9FE651.2e-5390.7660S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1[more]
Q9LJW63.5e-5390.0060S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1[more]
BLAST of HG10000403 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6I9SPA13.5e-5698.3360S ribosomal protein L34 OS=Sesamum indicum OX=4182 GN=LOC105156538 PE=3 SV=1[more]
A0A6J1BYX47.8e-5697.5060S ribosomal protein L34-like OS=Momordica charantia OX=3673 GN=LOC111006730 PE... [more]
A0A6J1I6I61.0e-5598.3360S ribosomal protein L34-like OS=Cucurbita maxima OX=3661 GN=LOC111471563 PE=3 ... [more]
A0A6J1HLN71.0e-5598.3360S ribosomal protein L34-like OS=Cucurbita moschata OX=3662 GN=LOC111464723 PE=... [more]
A0A6J1DF781.0e-5598.3360S ribosomal protein L34 OS=Momordica charantia OX=3673 GN=LOC111020506 PE=3 SV... [more]
BLAST of HG10000403 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G26880.11.3e-5590.83Ribosomal protein L34e superfamily protein [more]
AT1G69620.18.6e-5590.76ribosomal protein L34 [more]
AT3G28900.12.5e-5490.00Ribosomal protein L34e superfamily protein [more]
AT1G26880.24.4e-4390.22Ribosomal protein L34e superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 13..26
score: 59.18
coord: 44..54
score: 50.0
coord: 26..43
score: 53.57
coord: 66..88
score: 43.48
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..96
e-value: 2.8E-38
score: 130.1
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..120
NoneNo IPR availableGENE3D6.20.370.70coord: 1..37
e-value: 4.5E-22
score: 79.5
NoneNo IPR availableGENE3D6.20.340.10coord: 39..120
e-value: 3.5E-36
score: 125.0
NoneNo IPR availablePANTHERPTHR10759:SF14SUBFAMILY NOT NAMEDcoord: 1..120
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 15..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000403.1HG10000403.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome