HG10000185 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000185
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionCDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
LocationChr09: 1881539 .. 1881802 (+)
RNA-Seq ExpressionHG10000185
SyntenyHG10000185
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

mRNA sequence

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Coding sequence (CDS)

ATGGGAAGCAAAGCACCAAGCTGGGCTGATCAGTGGGGTTCAGGAAATTATGGAGTCGAAGACGACGACAACAAGGCAGTGACGAAGAAAGGGAGCAGCAATGGCAATAGTAGCAAGAAGATGGCAGAGGTGAAGGCAGCAGCCTCAGCTGGATTTGTGAAGGCGAAGGCTGTTGCAACTGTGGGTGCTCAAAAAGTGAAATCTGGAACTTCAGTAGGCATCAAATGGGTCAAGAATCAGTACCAGAAAAAGGTCTCCAAATGA

Protein sequence

MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKVKSGTSVGIKWVKNQYQKKVSK
Homology
BLAST of HG10000185 vs. NCBI nr
Match: KAA0059574.1 (hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE8652289.1 hypothetical protein Csa_022099 [Cucumis sativus] >TYK24204.1 hypothetical protein E5676_scaffold27G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 1.5e-34
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of HG10000185 vs. NCBI nr
Match: KAG7010736.1 (hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 3.7e-33
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKVSK 87

BLAST of HG10000185 vs. NCBI nr
Match: KAG6570886.1 (hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.5 bits (371), Expect = 5.3e-32
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG+YGVEDDDN A+TKKGSSNGNSSKKMA+VKAAASAGFVKAK+ A 
Sbjct: 1  MGSKAPSWADQWGSGDYGVEDDDNTAMTKKGSSNGNSSKKMADVKAAASAGFVKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVGIKWVKNQYQKK S
Sbjct: 61 VGAQKVKSGTSVGIKWVKNQYQKKKS 86

BLAST of HG10000185 vs. NCBI nr
Match: KAG7034974.1 (hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.7 bits (369), Expect = 9.0e-32
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSWADQWGSGNYGVEDDD K V KKGSSNG+SSKKM EVKAAASAGFVKAKAVA 
Sbjct: 91  MGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSSNGSSSKKMTEVKAAASAGFVKAKAVAA 150

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           VGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 151 VGAQKVKSGTSVGIKWVKNQYQKKVSK 176

BLAST of HG10000185 vs. NCBI nr
Match: KAG6604861.1 (hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.6 bits (353), Expect = 6.5e-30
Identity = 77/84 (91.67%), Postives = 78/84 (92.86%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSWADQWGSGNYGVEDDD K V KKGS NG+SSKKM EVKAAASAGFVKAKAVA 
Sbjct: 80  MGSKAPSWADQWGSGNYGVEDDD-KMVAKKGSGNGSSSKKMTEVKAAASAGFVKAKAVAA 139

Query: 61  VGAQKVKSGTSVGIKWVKNQYQKK 85
           VGAQKVKSGTSVGIKWVKNQYQKK
Sbjct: 140 VGAQKVKSGTSVGIKWVKNQYQKK 162

BLAST of HG10000185 vs. ExPASy TrEMBL
Match: A0A5D3DKS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00040 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.2e-35
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
          MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 1  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60

Query: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
          TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 61 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88

BLAST of HG10000185 vs. ExPASy TrEMBL
Match: A0A0A0LR11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.2e-35
Identity = 86/88 (97.73%), Postives = 86/88 (97.73%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDD-NKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 60
           MGSKAPSWADQWGSGNYGVEDDD N AVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA
Sbjct: 86  MGSKAPSWADQWGSGNYGVEDDDNNNAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVA 145

Query: 61  TVGAQKVKSGTSVGIKWVKNQYQKKVSK 88
           TVGAQKVKSGTSVGIKWVKNQYQKKVSK
Sbjct: 146 TVGAQKVKSGTSVGIKWVKNQYQKKVSK 173

BLAST of HG10000185 vs. ExPASy TrEMBL
Match: A0A5C7HG95 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26
Identity = 71/86 (82.56%), Postives = 77/86 (89.53%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWGSG++G E+DDNK VTKK SS+G SSKKMAE KAAASAGF KAKA A+
Sbjct: 1  MGSKAPSWADQWGSGSFGDEEDDNKLVTKK-SSSGGSSKKMAEAKAAASAGFDKAKAAAS 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVKSGTSVG+KWVK QYQKK S
Sbjct: 61 VGAQKVKSGTSVGLKWVKKQYQKKSS 85

BLAST of HG10000185 vs. ExPASy TrEMBL
Match: V4UEV4 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 9.1e-22
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 0

Query: 1  MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
          MGSKAPSWADQWG+G +GV+++D+K VTK  SS+G +  K+ EVKAAASAGF KAK+ A 
Sbjct: 1  MGSKAPSWADQWGTGGFGVDEEDDKLVTKNASSSGGN--KITEVKAAASAGFDKAKSAAA 60

Query: 61 VGAQKVKSGTSVGIKWVKNQYQKKVS 87
          VGAQKVK+GTS GIKWVK QYQKK S
Sbjct: 61 VGAQKVKAGTSAGIKWVKKQYQKKGS 84

BLAST of HG10000185 vs. ExPASy TrEMBL
Match: A0A2P5EE64 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orientale OX=63057 GN=TorRG33x02_203810 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.7e-21
Identity = 66/98 (67.35%), Postives = 72/98 (73.47%), Query Frame = 0

Query: 1   MGSKAPSWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVAT 60
           MGSKAPSW+DQWG  N+GVE DD+KA T KG  +G SSKKMAE KA ASAG  KAKA A 
Sbjct: 12  MGSKAPSWSDQWGGNNFGVEGDDDKAGTNKGKGSG-SSKKMAEAKAMASAGLGKAKAAAA 71

Query: 61  V-----------GAQKVKSGTSVGIKWVKNQYQKKVSK 88
           V           GAQKVKSGTS+GIKWVKNQYQK+ SK
Sbjct: 72  VGADKAKVAAIFGAQKVKSGTSLGIKWVKNQYQKRTSK 108

BLAST of HG10000185 vs. TAIR 10
Match: AT3G48180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19020.1); Has 84 Blast hits to 84 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 32/81 (39.51%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 7  SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 66
          SWA+QW S      +  +   T  G   G +S K    K    AG  K KA A+ G +KV
Sbjct: 5  SWAEQWDS------NQQSSGKTTHGGEGGGASSK---YKEKVGAGLGKTKAAASSGLKKV 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K GTS+G+ WVK++Y K  +K
Sbjct: 65 KIGTSLGLNWVKDKYNKTTTK 76

BLAST of HG10000185 vs. TAIR 10
Match: AT1G19020.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 6.5e-04
Identity = 26/81 (32.10%), Postives = 42/81 (51.85%), Query Frame = 0

Query: 7  SWADQWGSGNYGVEDDDNKAVTKKGSSNGNSSKKMAEVKAAASAGFVKAKAVATVGAQKV 66
          SWADQW +     +     +     SS   ++    + K     G  K KAVA+ G +K+
Sbjct: 5  SWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGFKKL 64

Query: 67 KSGTSVGIKWVKNQYQKKVSK 88
          K+G+++G +WVK++Y K   K
Sbjct: 65 KTGSAIGFRWVKDKYHKTTHK 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0059574.11.5e-3497.73hypothetical protein E6C27_scaffold4837G00020 [Cucumis melo var. makuwa] >KAE865... [more]
KAG7010736.13.7e-3391.95hypothetical protein SDJN02_27532, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570886.15.3e-3290.70hypothetical protein SDJN03_29801, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7034974.19.0e-3293.10hypothetical protein SDJN02_01767, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6604861.16.5e-3091.67hypothetical protein SDJN03_02178, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DKS57.2e-3597.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LR117.2e-3597.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G418340 PE=4 SV=1[more]
A0A5C7HG952.1e-2682.56Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_020628 PE=4 SV=1[more]
V4UEV49.1e-2270.93Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017336mg PE=4 ... [more]
A0A2P5EE642.7e-2167.35CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase OS=Trema orien... [more]
Match NameE-valueIdentityDescription
AT3G48180.11.5e-0539.51unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G19020.16.5e-0432.10unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availablePANTHERPTHR33386:SF13ANKYRIN REPEAT PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR33386OS02G0740600 PROTEINcoord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000185.1HG10000185.1mRNA