HG10000180 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000180
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionTranscription initiation factor IIF subunit beta
LocationChr09: 1817833 .. 1818154 (+)
RNA-Seq ExpressionHG10000180
SyntenyHG10000180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGTTGAGAAAGGAGCATGGTGAATTGCAGAAGATTATTTCTTTTTAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA

mRNA sequence

ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA

Coding sequence (CDS)

ATGAGGCCTATGCCAGTGATAGACGTGTTGTCATTTGGAGCTGCTGAGAAGAAGAAAGTAGTGAGCAAGGGATTAGAAACAAAGAGGCTTTTTGAAAGACAGCCATATTGGACGTCAAAACAATTGATACAAGAGACTGACTCTGACCAACCTGAACAATATATGACGAAAATACTTAAAGACCTTTGTGTCTACAACATCAAAGGTGTTTACCAAGGAACGTATGAGCTGAAGCCAGAATACAAGGAATCATGTGAGGAAACGAAACTGCAATAA

Protein sequence

MRPMPVIDVLSFGAAEKKKVVSKGLETKRLFERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETKLQ
Homology
BLAST of HG10000180 vs. NCBI nr
Match: XP_022990432.1 (general transcription factor IIF subunit 2-like [Cucurbita maxima] >XP_023543024.1 general transcription factor IIF subunit 2-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023543025.1 general transcription factor IIF subunit 2-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET
Sbjct: 174 MRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQET 233

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+CEETK
Sbjct: 234 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK 274

BLAST of HG10000180 vs. NCBI nr
Match: XP_022964851.1 (general transcription factor IIF subunit 2-like [Cucurbita moschata])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET
Sbjct: 174 MRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQET 233

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+CEETK
Sbjct: 234 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK 274

BLAST of HG10000180 vs. NCBI nr
Match: KAG6602326.1 (General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 147.1 bits (370), Expect = 7.2e-32
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET
Sbjct: 174 MRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQET 233

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+CEETK
Sbjct: 234 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK 274

BLAST of HG10000180 vs. NCBI nr
Match: XP_008465665.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET
Sbjct: 175 MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 234

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES EETK
Sbjct: 235 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETK 275

BLAST of HG10000180 vs. NCBI nr
Match: XP_008465664.1 (PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 1.2e-31
Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET
Sbjct: 181 MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 240

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES EETK
Sbjct: 241 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETK 281

BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q03123 (General transcription factor IIF subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-06
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 31  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
           FE+  Y+  K L+  T   QP  Y+ +IL+D+ +YN+KG ++ T+ELKPEY+    E K
Sbjct: 206 FEKHQYYNIKDLVDIT--KQPVTYLKEILRDIGIYNMKGTHKNTWELKPEYRHYQGEDK 262

BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q2T9L9 (General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 31  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
           FE+  Y+  K L+  T   QP  Y+  ILK++ V N+KG+++ T+ELKPEY+    E K
Sbjct: 191 FEKHQYYNLKDLVDIT--KQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYRHYQVEEK 247

BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: P13984 (General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 25/59 (42.37%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 31  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
           FE+  Y+  K L+  T   QP  Y+ +ILK++ V N+KG+++ T+ELKPEY+    E K
Sbjct: 191 FEKHQYYNLKDLVDIT--KQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYRHYQGEEK 247

BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q8R0A0 (General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 31  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
           FE+  Y+  K L+  T   QP  Y+ +ILK++ + N+KG+++ T+ELKPEY+    E K
Sbjct: 191 FEKHQYYNLKDLVDIT--KQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQTEEK 247

BLAST of HG10000180 vs. ExPASy Swiss-Prot
Match: Q01750 (General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 1.2e-05
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 0

Query: 31  FERQPYWTSKQLIQETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
           FE+  Y+  K L+  T   QP  Y+ +ILK++ + N+KG+++ T+ELKPEY+    E K
Sbjct: 191 FEKHQYYNLKDLVDIT--KQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYRHYQTEEK 247

BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A6J1JIQ3 (Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=LOC111487292 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET
Sbjct: 174 MRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQET 233

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+CEETK
Sbjct: 234 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK 274

BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A6J1HK34 (Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 GN=LOC111464830 PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.5e-32
Identity = 78/103 (75.73%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETK--------------RLFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG E K              RLFERQPYWTSKQLIQET
Sbjct: 174 MRPMPGMDVLSFGAAEKKKVVSKGSENKRLRKERGELEKIIFRLFERQPYWTSKQLIQET 233

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKE+CEETK
Sbjct: 234 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKETCEETK 274

BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A1S3CPE2 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET
Sbjct: 181 MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 240

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES EETK
Sbjct: 241 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETK 281

BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A1S3CPB8 (Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC103503304 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 79/103 (76.70%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET
Sbjct: 175 MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 234

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEYKES EETK
Sbjct: 235 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYKESSEETK 275

BLAST of HG10000180 vs. ExPASy TrEMBL
Match: A0A0A0KQP0 (TFIIF_beta domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G492360 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.0e-31
Identity = 77/103 (74.76%), Postives = 82/103 (79.61%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP +DVLSFGAAEKKKVVSKG ETKR              LFERQPYWTSKQLIQET
Sbjct: 88  MRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFKLFERQPYWTSKQLIQET 147

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEETK 90
             DQPEQYM +ILKDLCVYN KGV+QGTYELKPEY+ES E+TK
Sbjct: 148 --DQPEQYMKEILKDLCVYNNKGVHQGTYELKPEYRESSEDTK 188

BLAST of HG10000180 vs. TAIR 10
Match: AT3G52270.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-18
Identity = 51/101 (50.50%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 1   MRPMPVIDVLSFGAAEKKKVVSKGLETKR--------------LFERQPYWTSKQLIQET 60
           MRPMP + ++   A EKKK+ ++  E KR              LFERQ  WT + LIQET
Sbjct: 172 MRPMPGM-IIPTAAPEKKKLTNRTSEMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQET 231

Query: 61  DSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEE 88
             DQPEQ++  +LKDLC+YN KG  QGTYELKPEYK++ +E
Sbjct: 232 --DQPEQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 269

BLAST of HG10000180 vs. TAIR 10
Match: AT1G75510.1 (Transcription initiation factor IIF, beta subunit )

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-17
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 1   MRPMP-VIDVLSFGAAEKKKVVS-KGLETKR--------------LFERQPYWTSKQLIQ 60
           MRPMP ++ ++S  + EK+K    K  E KR              LFE QP WT KQL+Q
Sbjct: 156 MRPMPGMLGLVSSNSKEKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQ 215

Query: 61  ETDSDQPEQYMTKILKDLCVYNIKGVYQGTYELKPEYKESCEE 88
           ET  DQP Q++ +IL +LCVYN +G  QGTYELKPEYK+S E+
Sbjct: 216 ET--DQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAED 256

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022990432.17.2e-3275.73general transcription factor IIF subunit 2-like [Cucurbita maxima] >XP_023543024... [more]
XP_022964851.17.2e-3275.73general transcription factor IIF subunit 2-like [Cucurbita moschata][more]
KAG6602326.17.2e-3275.73General transcription factor IIF subunit 2, partial [Cucurbita argyrosperma subs... [more]
XP_008465665.11.2e-3176.70PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo][more]
XP_008465664.11.2e-3176.70PREDICTED: general transcription factor IIF subunit 2 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Q031234.2e-0642.37General transcription factor IIF subunit 2 OS=Xenopus laevis OX=8355 GN=gtf2f2 P... [more]
Q2T9L91.2e-0542.37General transcription factor IIF subunit 2 OS=Bos taurus OX=9913 GN=GTF2F2 PE=2 ... [more]
P139841.2e-0542.37General transcription factor IIF subunit 2 OS=Homo sapiens OX=9606 GN=GTF2F2 PE=... [more]
Q8R0A01.2e-0540.68General transcription factor IIF subunit 2 OS=Mus musculus OX=10090 GN=Gtf2f2 PE... [more]
Q017501.2e-0540.68General transcription factor IIF subunit 2 OS=Rattus norvegicus OX=10116 GN=Gtf2... [more]
Match NameE-valueIdentityDescription
A0A6J1JIQ33.5e-3275.73Transcription initiation factor IIF subunit beta OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1HK343.5e-3275.73Transcription initiation factor IIF subunit beta OS=Cucurbita moschata OX=3662 G... [more]
A0A1S3CPE26.0e-3276.70Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A1S3CPB86.0e-3276.70Transcription initiation factor IIF subunit beta OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A0A0KQP03.0e-3174.76TFIIF_beta domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G492360 ... [more]
Match NameE-valueIdentityDescription
AT3G52270.11.3e-1850.50Transcription initiation factor IIF, beta subunit [more]
AT1G75510.14.1e-1749.51Transcription initiation factor IIF, beta subunit [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR040450TFIIF beta subunit, HTH domainPFAMPF02270TFIIF_betacoord: 29..82
e-value: 1.0E-14
score: 54.4
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 24..83
e-value: 5.3E-22
score: 79.7
NoneNo IPR availablePANTHERPTHR10445:SF2TRANSCRIPTION INITIATION FACTOR IIF, BETA SUBUNITcoord: 1..88
IPR003196Transcription initiation factor IIF, beta subunitPANTHERPTHR10445GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2coord: 1..88
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 29..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000180.1HG10000180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
biological_process GO:0006366 transcription by RNA polymerase II
cellular_component GO:0005674 transcription factor TFIIF complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0008168 methyltransferase activity