HG10000179 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10000179
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	THO complex subunit 1
Location	Chr09: 1816827 .. 1817489 (-)
RNA-Seq Expression	HG10000179
Synteny	HG10000179

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTATTCTTGTCCAGGAATACTTTTGTAATCCTGCCTCCCTTGCACTTGCTTTAACGAAGTGGCAAAAGTTCACATCCAGTTTAATGGTATACCTTTTTATTCTTGTCTATTTATTTTTAGCTCATGTATCTTTTCTTTTAATGGTATATATATACATTTTATAAAGTGCATTTTGTTTGGATTTTGAAATTTTAAGGTCATATTGGATACCTTTGATGCACAACCTTTGTCTGATGAAGAGGGAGATGCTAACATCTTGGAGGAAGAGTCGGCAACCTTTAGCATAAAATATCTTACTAGTAGTAAACTTATGGGTTTAGAAGTAAGTTTGATCTAGTTTGTATGAATACTACTTCTGAAGTTGTAAAATTTTAAGTTTTCACTCAAATTAGCTTGGTTGTGTCTCGTTTTCTTATTCCCTTCTTCTTTTGGTGGCAGTTGAAGGATCCAAGTTTTCGGCGTCACGTTCTTATGCAGTGCCTTATATTGTTTGATTATCTAAAGGTACAATAGTTGTTTGTTTTAAAATTCTTAGGCAGACTTGGTTTTCTATAAGTTTGAAGTAGTCCTAATTAGTTATTTTCTTGTTTTAGGCCCCAGGAAAGAATGAGAAAGATACTCCATCTGAAACCATGGTTAGTACCGTATCACATTTTTAA

mRNA sequence

ATGTGTATTCTTGTCCAGGAATACTTTTGTAATCCTGCCTCCCTTGCACTTGCTTTAACGAAGTGGCAAAAGTTCACATCCAGTTTAATGGTCATATTGGATACCTTTGATGCACAACCTTTGTCTGATGAAGAGGGAGATGCTAACATCTTGGAGGAAGAGTCGGCAACCTTTAGCATAAAATATCTTACTAGTAGTAAACTTATGGGTTTAGAATTGAAGGATCCAAGTTTTCGGCGTCACGTTCTTATGCAGTGCCTTATATTGTTTGATTATCTAAAGGCCCCAGGAAAGAATGAGAAAGATACTCCATCTGAAACCATGGTTAGTACCGTATCACATTTTTAA

Coding sequence (CDS)

ATGTGTATTCTTGTCCAGGAATACTTTTGTAATCCTGCCTCCCTTGCACTTGCTTTAACGAAGTGGCAAAAGTTCACATCCAGTTTAATGGTCATATTGGATACCTTTGATGCACAACCTTTGTCTGATGAAGAGGGAGATGCTAACATCTTGGAGGAAGAGTCGGCAACCTTTAGCATAAAATATCTTACTAGTAGTAAACTTATGGGTTTAGAATTGAAGGATCCAAGTTTTCGGCGTCACGTTCTTATGCAGTGCCTTATATTGTTTGATTATCTAAAGGCCCCAGGAAAGAATGAGAAAGATACTCCATCTGAAACCATGGTTAGTACCGTATCACATTTTTAA

Protein sequence

MCILVQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLTSSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETMVSTVSHF

Homology

[Close]

BLAST of HG10000179 vs. NCBI nr
Match: XP_038892206.1 (THO complex subunit 1 isoform X3 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 155 LQEYFCNPASLALAPTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 214

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 215 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 258

[Close]

BLAST of HG10000179 vs. NCBI nr
Match: XP_038892204.1 (THO complex subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 212 LQEYFCNPASLALAPTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 271

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 272 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 315

[Close]

BLAST of HG10000179 vs. NCBI nr
Match: XP_038892203.1 (THO complex subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 201.8 bits (512), Expect = 3.1e-48
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 219 LQEYFCNPASLALAPTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 278

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 279 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 322

[Close]

BLAST of HG10000179 vs. NCBI nr
Match: KGN51016.1 (hypothetical protein Csa_007827 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 7.0e-48
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QE+FCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 225 LQEFFCNPASLALASTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 284

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 285 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 328

[Close]

BLAST of HG10000179 vs. NCBI nr
Match: XP_011655214.1 (THO complex subunit 1 [Cucumis sativus])

HSP 1 Score: 200.7 bits (509), Expect = 7.0e-48
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QE+FCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 225 LQEFFCNPASLALASTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 284

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 285 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 328

[Close]

BLAST of HG10000179 vs. ExPASy Swiss-Prot
Match: Q93VM9 (THO complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=THO1 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.8e-44
Identity = 84/104 (80.77%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASL  A TKWQKF+SSL V+L+TFDAQPLS+EEG+AN LEEE+ATF+IKYLT
Sbjct: 222 LQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLT 281

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKD SFRRH+L+QCLI+FDYL+APGKN+KD PSETM
Sbjct: 282 SSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETM 325

[Close]

BLAST of HG10000179 vs. ExPASy Swiss-Prot
Match: Q96FV9 (THO complex subunit 1 OS=Homo sapiens OX=9606 GN=THOC1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESA----TFSI 64
           +Q+YF NP      ++ W+ F      +L  F +  L D +     +EE        +  
Sbjct: 241 LQDYFRNPVQCYEKIS-WKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFA 300

Query: 65  KYLTSSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGK 99
           K+LTS KLM L+L D +FRRH+L+Q LILF YLK   K
Sbjct: 301 KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVK 337

[Close]

BLAST of HG10000179 vs. ExPASy Swiss-Prot
Match: Q8R3N6 (THO complex subunit 1 OS=Mus musculus OX=10090 GN=Thoc1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-09
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESA----TFSI 64
           +Q+YF NP      ++ W+ F      +L  F +  L D +     +EE        +  
Sbjct: 241 LQDYFRNPVQCYEKIS-WKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFA 300

Query: 65  KYLTSSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGK 99
           K+LTS KLM L+L D +FRRH+L+Q LILF YLK   K
Sbjct: 301 KFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVK 337

[Close]

BLAST of HG10000179 vs. ExPASy TrEMBL
Match: A0A0A0KTL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G407100 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.4e-48
Identity = 98/104 (94.23%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QE+FCNPASLALA TKWQKFTSSLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 225 LQEFFCNPASLALASTKWQKFTSSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 284

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 285 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 328

[Close]

BLAST of HG10000179 vs. ExPASy TrEMBL
Match: A0A5A7V9M3 (THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G002040 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.9e-47
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QE+FCNPASLALA TKWQKF  SLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 298 LQEFFCNPASLALASTKWQKFACSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 357

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 358 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 401

[Close]

BLAST of HG10000179 vs. ExPASy TrEMBL
Match: A0A1S3CC63 (THO complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103499294 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.9e-47
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QE+FCNPASLALA TKWQKF  SLMV+L+TFDAQPLSDEEGDANILEEESATFSIKYLT
Sbjct: 225 LQEFFCNPASLALASTKWQKFACSLMVVLNTFDAQPLSDEEGDANILEEESATFSIKYLT 284

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKD PSETM
Sbjct: 285 SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDIPSETM 328

[Close]

BLAST of HG10000179 vs. ExPASy TrEMBL
Match: A0A6J1HPE8 (THO complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111466514 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 8.3e-47
Identity = 95/104 (91.35%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASL LA TKWQKFTSSL V+L+TFDAQPLSDEEGDAN+LEEESATFSIKYLT
Sbjct: 219 LQEYFCNPASLTLASTKWQKFTSSLAVVLNTFDAQPLSDEEGDANMLEEESATFSIKYLT 278

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVL+QCLILFDYLKAPGKNEKD PSETM
Sbjct: 279 SSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKNEKDVPSETM 322

[Close]

BLAST of HG10000179 vs. ExPASy TrEMBL
Match: A0A6J1CC37 (THO complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111010121 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.4e-46
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASL+LA TKWQKFTSSLM++L+TFDAQPLSDEEGDANILEEE+A+FSIKYLT
Sbjct: 219 LQEYFCNPASLSLASTKWQKFTSSLMIVLNTFDAQPLSDEEGDANILEEEAASFSIKYLT 278

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKDPSFRRHVL+QCLILFDYLKAPGKNEKD PSET+
Sbjct: 279 SSKLMGLELKDPSFRRHVLVQCLILFDYLKAPGKNEKDVPSETI 322

[Close]

BLAST of HG10000179 vs. TAIR 10
Match: AT5G09860.1 (nuclear matrix protein-related )

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-45
Identity = 84/104 (80.77%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASL  A TKWQKF+SSL V+L+TFDAQPLS+EEG+AN LEEE+ATF+IKYLT
Sbjct: 222 LQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLT 281

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKD SFRRH+L+QCLI+FDYL+APGKN+KD PSETM
Sbjct: 282 SSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETM 325

[Close]

BLAST of HG10000179 vs. TAIR 10
Match: AT5G09860.2 (nuclear matrix protein-related )

HSP 1 Score: 179.1 bits (453), Expect = 2.0e-45
Identity = 84/104 (80.77%), Postives = 97/104 (93.27%), Query Frame = 0


Query: 5   VQEYFCNPASLALALTKWQKFTSSLMVILDTFDAQPLSDEEGDANILEEESATFSIKYLT 64
           +QEYFCNPASL  A TKWQKF+SSL V+L+TFDAQPLS+EEG+AN LEEE+ATF+IKYLT
Sbjct: 222 LQEYFCNPASLTSASTKWQKFSSSLAVVLNTFDAQPLSEEEGEANSLEEEAATFNIKYLT 281

Query: 65  SSKLMGLELKDPSFRRHVLMQCLILFDYLKAPGKNEKDTPSETM 109
           SSKLMGLELKD SFRRH+L+QCLI+FDYL+APGKN+KD PSETM
Sbjct: 282 SSKLMGLELKDSSFRRHILLQCLIMFDYLRAPGKNDKDLPSETM 325

The following BLAST results are available for this feature:

BLAST of HG10000179 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892206.1	3.1e-48	95.19	THO complex subunit 1 isoform X3 [Benincasa hispida]	[more]
XP_038892204.1	3.1e-48	95.19	THO complex subunit 1 isoform X2 [Benincasa hispida]	[more]
XP_038892203.1	3.1e-48	95.19	THO complex subunit 1 isoform X1 [Benincasa hispida]	[more]
KGN51016.1	7.0e-48	94.23	hypothetical protein Csa_007827 [Cucumis sativus]	[more]
XP_011655214.1	7.0e-48	94.23	THO complex subunit 1 [Cucumis sativus]	[more]

BLAST of HG10000179 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VM9	2.8e-44	80.77	THO complex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=THO1 PE=1 SV=1	[more]
Q96FV9	1.3e-09	37.76	THO complex subunit 1 OS=Homo sapiens OX=9606 GN=THOC1 PE=1 SV=1	[more]
Q8R3N6	1.3e-09	37.76	THO complex subunit 1 OS=Mus musculus OX=10090 GN=Thoc1 PE=1 SV=1	[more]

BLAST of HG10000179 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTL0	3.4e-48	94.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G407100 PE=4 SV=1	[more]
A0A5A7V9M3	4.9e-47	92.31	THO complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A1S3CC63	4.9e-47	92.31	THO complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103499294 PE=4 SV=1	[more]
A0A6J1HPE8	8.3e-47	91.35	THO complex subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111466514 PE=4 SV=1	[more]
A0A6J1CC37	1.4e-46	89.42	THO complex subunit 1 OS=Momordica charantia OX=3673 GN=LOC111010121 PE=4 SV=1	[more]

BLAST of HG10000179 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09860.1	2.0e-45	80.77	nuclear matrix protein-related	[more]
AT5G09860.2	2.0e-45	80.77	nuclear matrix protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021861	THO complex, subunit THOC1	PFAM	PF11957	efThoc1	coord: 6..97 e-value: 7.9E-14 score: 51.2
IPR021861	THO complex, subunit THOC1	PANTHER	PTHR13265	THO COMPLEX SUBUNIT 1	coord: 5..112
None	No IPR available	PANTHER	PTHR13265:SF0	HPR1	coord: 5..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10000179.1	HG10000179.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
biological_process	GO:0032784	regulation of DNA-templated transcription, elongation
cellular_component	GO:0000445	THO complex part of transcription export complex