HG10000177 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000177
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionATPase family AAA domain-containing protein
LocationChr09: 1814633 .. 1815241 (-)
RNA-Seq ExpressionHG10000177
SyntenyHG10000177
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGGAAAAACCCCAAAAATACCGAACCAACTCTCTCGGATGCGGAAGCATCTTTCTCCCCACTAGCAGTCGAGCAGCGGCTTAAGGCATTAGAAAATGCTGTGAGTGGAATAAACAACACAATTTCTGGGATACAGCAAGCCATTGAGACACTTACAGCCGAAATTGGAAGAGCTTTTGTTGTCCACAACAAAGGAAAAGGCAAAGAAATCGACTACGACAATCAAGAAAATAAAGAAAATCCAAGAATGCAAGAACTTGCAAGAAGTCCACCTAGAAGACAAATTTCAGAATTTCAACCAACAATCAATTACCAAAATCATCGAGTAGGTATTATTCCTCAACAACAAAGACCGATTGCACACAATATGATGGGATATGATTTGGACTCTTCAAACGATGAAGGTTGTTCACAATTCCACCAAAATTATTTTTCAAGGTACCCTCCTAACCCTTTGTATCAAGAAAAACATCTTCAAGCCCAAGAACCTACCAAGAACACAGAAATTATGGTCATAATGGCCTTGTTTTCTATCAAGAGAAGAATTATGGTCGACATTTTCAAGAAAGAGCAAGAAGTCCACCAATACCCTTCATCCAAATAA

mRNA sequence

ATGGGCGGGAAAAACCCCAAAAATACCGAACCAACTCTCTCGGATGCGGAAGCATCTTTCTCCCCACTAGCAGTCGAGCAGCGGCTTAAGGCATTAGAAAATGCTGTGAGTGGAATAAACAACACAATTTCTGGGATACAGCAAGCCATTGAGACACTTACAGCCGAAATTGGAAGAGCTTTTGTTGTCCACAACAAAGGAAAAGGCAAAGAAATCGACTACGACAATCAAGAAAATAAAGAAAATCCAAGAATGCAAGAACTTGCAAGAAGTCCACCTAGAAGACAAATTTCAGAATTTCAACCAACAATCAATTACCAAAATCATCGAGTAGGTATTATTCCTCAACAACAAAGACCGATTGCACACAATATGATGGGATATGATTTGGACTCTTCAAACGATGAAGGTTGTTCACAATTCCACCAAAATTATTTTTCAAGGTACCCTCCTAACCCTTTGTATCAAGAAAAACATCTTCAAGCCCAAGAACCTACCAAGAACACAGAAATTATGGTCATAATGGCCTTGTTTTCTATCAAGAGAAGAATTATGGTCGACATTTTCAAGAAAGAGCAAGAAGTCCACCAATACCCTTCATCCAAATAA

Coding sequence (CDS)

ATGGGCGGGAAAAACCCCAAAAATACCGAACCAACTCTCTCGGATGCGGAAGCATCTTTCTCCCCACTAGCAGTCGAGCAGCGGCTTAAGGCATTAGAAAATGCTGTGAGTGGAATAAACAACACAATTTCTGGGATACAGCAAGCCATTGAGACACTTACAGCCGAAATTGGAAGAGCTTTTGTTGTCCACAACAAAGGAAAAGGCAAAGAAATCGACTACGACAATCAAGAAAATAAAGAAAATCCAAGAATGCAAGAACTTGCAAGAAGTCCACCTAGAAGACAAATTTCAGAATTTCAACCAACAATCAATTACCAAAATCATCGAGTAGGTATTATTCCTCAACAACAAAGACCGATTGCACACAATATGATGGGATATGATTTGGACTCTTCAAACGATGAAGGTTGTTCACAATTCCACCAAAATTATTTTTCAAGGTACCCTCCTAACCCTTTGTATCAAGAAAAACATCTTCAAGCCCAAGAACCTACCAAGAACACAGAAATTATGGTCATAATGGCCTTGTTTTCTATCAAGAGAAGAATTATGGTCGACATTTTCAAGAAAGAGCAAGAAGTCCACCAATACCCTTCATCCAAATAA

Protein sequence

MGGKNPKNTEPTLSDAEASFSPLAVEQRLKALENAVSGINNTISGIQQAIETLTAEIGRAFVVHNKGKGKEIDYDNQENKENPRMQELARSPPRRQISEFQPTINYQNHRVGIIPQQQRPIAHNMMGYDLDSSNDEGCSQFHQNYFSRYPPNPLYQEKHLQAQEPTKNTEIMVIMALFSIKRRIMVDIFKKEQEVHQYPSSK
Homology
[Close]
BLAST of HG10000177 vs. NCBI nr
Match: TYK03471.1 (ATPase family AAA domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 4.9e-04
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 2   GGKNPKNTEPTLSDAEASFSPLAVEQRLKALENAVSGINNTISGIQQAIETLTAEIGRAF 61
           G + P+       D EAS SP  ++Q L  +EN    ++NTI GIQQAIE L  E G+  
Sbjct: 203 GRRKPQERPSKPIDVEASSSPQTIDQCLTGVEN--PSLSNTIVGIQQAIELLMVEDGK-- 262

Query: 62  VVHNKGKGKEIDYDNQENKE 82
           +  NK KG EI+Y++QE +E
Sbjct: 263 ISTNKNKGSEIEYNHQEFQE 278

[Close]
BLAST of HG10000177 vs. ExPASy TrEMBL
Match: A0A5D3BUQ9 (ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00820 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 35/80 (43.75%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 2   GGKNPKNTEPTLSDAEASFSPLAVEQRLKALENAVSGINNTISGIQQAIETLTAEIGRAF 61
           G + P+       D EAS SP  ++Q L  +EN    ++NTI GIQQAIE L  E G+  
Sbjct: 203 GRRKPQERPSKPIDVEASSSPQTIDQCLTGVEN--PSLSNTIVGIQQAIELLMVEDGK-- 262

Query: 62  VVHNKGKGKEIDYDNQENKE 82
           +  NK KG EI+Y++QE +E
Sbjct: 263 ISTNKNKGSEIEYNHQEFQE 278

The following BLAST results are available for this feature:
BLAST of HG10000177 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03471.14.9e-0443.75ATPase family AAA domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of HG10000177 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of HG10000177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BUQ92.4e-0443.75ATPase family AAA domain-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of HG10000177 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000177.1HG10000177.1mRNA