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HG10000112 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGCGTTGCTTAATGCTTTTGCATCTACTTTAAGTGCGAGAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTTTTCCCTCTCCAAAAGGAGATCAACGAAAACTGTGGTCAATCTTCAACCTTATTTCTCTCATCAGTGTTTTAGTTGCGAAACGGCGCTCTAAAATTTTGAAATGACGACAAGATAGCCTTTCCCTTTCCCTTTCCCTTTCCCCTGCTTTAAAATAAAGAGTTTGGCGAAACGTTTCAGTAAATAACGTAATGTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA ATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA ATGGCTTCAATCGGTGCTAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTTCTCACATCGGTTCTCAAGCCAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAACAAGCCTCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAA MASIGARSVFRSFSGSARRAASHIGSQAKPSSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSASSSALMTSMLSISRHSCGWLPEGA Homology
BLAST of HG10000112 vs. NCBI nr
Match: KGN63196.1 (hypothetical protein Csa_022217 [Cucumis sativus]) HSP 1 Score: 169.1 bits (427), Expect = 1.8e-38 Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of HG10000112 vs. NCBI nr
Match: KAE8652269.1 (hypothetical protein Csa_021983 [Cucumis sativus] >KGN63193.1 hypothetical protein Csa_022010 [Cucumis sativus]) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of HG10000112 vs. NCBI nr
Match: XP_038901103.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida]) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of HG10000112 vs. NCBI nr
Match: XP_038901106.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X3 [Benincasa hispida]) HSP 1 Score: 167.9 bits (424), Expect = 4.0e-38 Identity = 86/91 (94.51%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of HG10000112 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 167.5 bits (423), Expect = 5.2e-38 Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 4.5e-08 Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 8.7e-39 Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.9e-38 Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy TrEMBL
Match: A0A0A0LMP1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408410 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 2.8e-37 Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy TrEMBL
Match: A0A5D3BHH0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00120 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37 Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0
BLAST of HG10000112 vs. ExPASy TrEMBL
Match: A0A1S4E0Y3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 162.9 bits (411), Expect = 6.2e-37 Identity = 84/91 (92.31%), Postives = 86/91 (94.51%), Query Frame = 0
BLAST of HG10000112 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of HG10000112 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of HG10000112 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 67.8 bits (164), Expect = 5.3e-12 Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 0
BLAST of HG10000112 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11 Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0
BLAST of HG10000112 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11 Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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