Cucsat.G9927 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9927
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	CLAVATA3/ESR (CLE)-related protein 25
Location	ctg1673: 1837351 .. 1838684 (+)
RNA-Seq Expression	Cucsat.G9927
Synteny	Cucsat.G9927

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTAAAATAGAGAACAAAACAAAAACAAAAAAACATGGCAAATCAAGGTTTGAGAAAAGTGCAACAGAATCCACCAAAACCCTATAAAGAAAAAAAGAAAGCTCGCCCTAATTAAACATGCATCCCCTACCAAACAAACTAACAAAATAGTAATAACATCTCCTTCTTTCTTTCCCTTCCAATCCCCATACTACTTCTTCTCTTCATTGCTTTCATATCCATCCCGTTTTCATCCAATCATAAAACTAATTAACCACGACTCACTCTCGACATATACGTCTGAAGTAGATCATACATACACAATTAAATCTAGCTATATATATTTATGAAAAGTGTAGATAGCTGTTGCTATTTTTCTTACTTGAAGGTCTTGCTTGGTGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTGGTTGTTGGGTCATCCCCGCCACCACCAGGGAGAACGAAAAGCTGGCAGGCGGCGGCTGAGTCTGTTCATCAGGTCGAGGGAAGGCATGCCATGAAGGAAGCTGAGGATCAATTGGCCATTAACAACCATCCAAAGCTGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCAGACCCCATCCATAACAGGTATATATTATTTGAACACACTTTGCATTTAAGATTATTAAACTTATCAGGTATTATTATTTTAAAACCATGCGAGAAAAAAAAAACATTTTAATTTATTTAAATTATAAGTTTTGTTCAATTTAATCTTAAATTTCAAAATATCATAATTTTACTTTTGAAATTTCAATTTTTCATTGACTACTAGCTTGGTGGGTAAAAAAAAATTAAATTCATCCATGTTACGTTTGGAATTTTGTACTGAAAGGTCACAATCTAGAGCATAGTGTTTTAGCAGATAAAAAGTGTCATAATTACTATTTGAAAAAAATTATTGGTTGGTTGTTAACAAAATCAATAAAGAGTTTGTATTGATATTTTTTTGTGTTATTATAAAAGAAATGTTTATTTTAGGAGTGATTTATGTTGCTGTTGAATATGTATATATATGTGTGTGTGTGTGTACTTGAATTGGCAGGAGAATTGGGGTGAAAGGAGGGCCTCCAAGAGGAGCTTAGGCTTTTTTGTACTCACGAAGGCATAGATTCCTTCCTCCACTTTTAAATATTAAGGATTATTATGAACATTTCTTTTCTTCTTCTTTTTTGGGTAATTTCAATAAGAAAAAAGAATGTATAAAAGCTCTTAATAAATCTGGATTGTATAGAATTGATTCACACTCAACTTTGTAGCTTTTTACATCCAACACTTATTCTTCCTAATTTTGTCTTCCCTTACTTCT

Coding sequence (CDS)

ATGAAAAGTGTAGATAGCTGTTGCTATTTTTCTTACTTGAAGGTCTTGCTTGGTGCTGTGGTTGTGGGGCTGTTTGTATGGCTTTTGGTTGTTGGGTCATCCCCGCCACCACCAGGGAGAACGAAAAGCTGGCAGGCGGCGGCTGAGTCTGTTCATCAGGTCGAGGGAAGGCATGCCATGAAGGAAGCTGAGGATCAATTGGCCATTAACAACCATCCAAAGCTGTTGGATCCTAACTTTATGAGCAAAGTTAGAGTTCCTAAAGGACCAGACCCCATCCATAACAGGAGAATTGGGGTGAAAGGAGGGCCTCCAAGAGGAGCTTAG

Protein sequence

MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA

Homology

[Close]

BLAST of Cucsat.G9927 vs. NCBI nr
Match: XP_011655655.1 (uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical protein Csa_008237 [Cucumis sativus])

HSP 1 Score: 223 bits (569), Expect = 1.27e-73
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108
           KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Cucsat.G9927 vs. NCBI nr
Match: XP_038891924.1 (uncharacterized protein LOC120081268 [Benincasa hispida])

HSP 1 Score: 160 bits (404), Expect = 1.55e-48
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           M+SVDSC YFSYLKVLLGAVVVGLFVWLL+VGS PP  GRT S + AAES  +VEG H M
Sbjct: 1   MRSVDSCSYFSYLKVLLGAVVVGLFVWLLIVGSLPP--GRTTSRRPAAES--EVEGSHVM 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108
           K+AE+ LA NNHPKL DPNFMSKV+VPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  KQAEE-LANNNHPKL-DPNFMSKVKVPKGPDPIHNRRIGVKGGPPRGA 102

[Close]

BLAST of Cucsat.G9927 vs. NCBI nr
Match: KAG7030819.1 (hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (248), Expect = 6.74e-25
Identity = 59/108 (54.63%), Postives = 68/108 (62.96%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVG---SSPPPPGRTKSWQAAAESVHQVEGR 60
           M+   SCC FSY KVLLGAV VG+FVWLL+VG   S      +T SW AA     + EG 
Sbjct: 1   MRREGSCCSFSYFKVLLGAVAVGMFVWLLIVGMPDSGERSMAKTTSWPAARS---EFEGS 60

Query: 61  HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
           H MK+A++             NFMSKV+VPKGPDPIHNRR GVKG PP
Sbjct: 61  H-MKQAKEL------------NFMSKVKVPKGPDPIHNRRTGVKGRPP 92

[Close]

BLAST of Cucsat.G9927 vs. NCBI nr
Match: XP_022151235.1 (uncharacterized protein LOC111019209 [Momordica charantia])

HSP 1 Score: 94.7 bits (234), Expect = 1.16e-22
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           M+S  + C FSYLK LL A+VVGLF+W+L+VG    P  R +        +    G H  
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGL---PESRERPAVETTNGLLATVGSHVK 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
           +    ++  NN+ + LD NFMSKVRVPKGPDPIHNRR+G+ GGPP
Sbjct: 61  QV---KVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPP 99

[Close]

BLAST of Cucsat.G9927 vs. NCBI nr
Match: PON53732.1 (CLAVATA3/ESR (CLE)-related protein [Trema orientale])

HSP 1 Score: 68.2 bits (165), Expect = 5.05e-12
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 5   DSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQA--AAE--SVHQVEGR--H 64
           DS     +LK+L+ A+VV   +W+L+ G+     G T   +   AAE  S  +++G+   
Sbjct: 14  DSSSVSCFLKLLVRAIVVVGLMWILLAGTPEGTVGATTKTRTNLAAEYYSTAKIKGKDDQ 73

Query: 65  AMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
            +   E++LA   HPKL   N+MSK RVP GPDPIHNRR G KG PP
Sbjct: 74  VVVATEEKLA---HPKLDLINYMSKRRVPNGPDPIHNRRAGKKGRPP 117

[Close]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL
Match: A0A0A0KQF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 6.17e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM
Sbjct: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108
           KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA
Sbjct: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPPRGA 108

[Close]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL
Match: A0A6J1DAM7 (uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019209 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.63e-23
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 1   MKSVDSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAM 60
           M+S  + C FSYLK LL A+VVGLF+W+L+VG    P  R +        +    G H  
Sbjct: 1   MRSEGNLCLFSYLKFLLQALVVGLFLWILMVGL---PESRERPAVETTNGLLATVGSHVK 60

Query: 61  KEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
           +    ++  NN+ + LD NFMSKVRVPKGPDPIHNRR+G+ GGPP
Sbjct: 61  QV---KVLPNNNHQDLDLNFMSKVRVPKGPDPIHNRRVGINGGPP 99

[Close]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL
Match: A0A2P5BY63 (CLAVATA3/ESR (CLE)-related protein OS=Trema orientale OX=63057 GN=TorRG33x02_304180 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.44e-12
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 5   DSCCYFSYLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQA--AAE--SVHQVEGR--H 64
           DS     +LK+L+ A+VV   +W+L+ G+     G T   +   AAE  S  +++G+   
Sbjct: 14  DSSSVSCFLKLLVRAIVVVGLMWILLAGTPEGTVGATTKTRTNLAAEYYSTAKIKGKDDQ 73

Query: 65  AMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
            +   E++LA   HPKL   N+MSK RVP GPDPIHNRR G KG PP
Sbjct: 74  VVVATEEKLA---HPKLDLINYMSKRRVPNGPDPIHNRRAGKKGRPP 117

[Close]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL
Match: A0A803QZV9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.38e-11
Identity = 47/114 (41.23%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 10  FSYLKVLL-GAVVVGLFVWLLVVGSSPP----------------PPGRTKSWQAAAESVH 69
           F  LK+L+ G  VVGL +W+L+ G++P                     TKS  A  ES  
Sbjct: 17  FHLLKILVRGLAVVGL-MWILLAGTTPEGTTGTTTTRTTTTTTSTTPHTKSNLAPTESAG 76

Query: 70  QVEGR-HAMKEAEDQLAINNHPKLLDPNFMSKVRVPKGPDPIHNRRIGVKGGPP 105
           +++G  H +   +++LA   HPKL   N+MSK RVP GPDPIHNRR G  G PP
Sbjct: 77  KIKGNDHVVVVGKEKLA---HPKLDLINYMSKRRVPNGPDPIHNRRAGKSGRPP 126

[Close]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL
Match: A0A2P5A4X1 (CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_368770 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.28e-10
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 12  YLKVLLGAVVVGLFVWLLVVGSSPPPPGRTKSWQAAAESVHQVEGRHAMKEAEDQLAINN 71
           +LK+L+ A+VV   +W+++  +     G T   +      +    +  +K  +DQ+ +  
Sbjct: 22  FLKLLVRAIVVVGLMWIMLAATPEGTVGATTKTRTNLAGEYYSTAK--IKGKDDQVVVGT 81

Query: 72  HPKLLDP-----NFMSKVRVPKGPDPIHNRRIGVKGGPP 105
             KL  P     N+MSK RVP GPDPIHNRR G KG PP
Sbjct: 82  EEKLAHPKLDLINYMSKRRVPNGPDPIHNRRAGKKGRPP 118

The following BLAST results are available for this feature:

BLAST of Cucsat.G9927 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G9927 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655655.1	1.27e-73	100.00	uncharacterized protein LOC105435565 [Cucumis sativus] >KGN51858.1 hypothetical ...	[more]
XP_038891924.1	1.55e-48	80.56	uncharacterized protein LOC120081268 [Benincasa hispida]	[more]
KAG7030819.1	6.74e-25	54.63	hypothetical protein SDJN02_04856, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022151235.1	1.16e-22	49.52	uncharacterized protein LOC111019209 [Momordica charantia]	[more]
PON53732.1	5.05e-12	42.99	CLAVATA3/ESR (CLE)-related protein [Trema orientale]	[more]

BLAST of Cucsat.G9927 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQF7	6.17e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604030 PE=4 SV=1	[more]
A0A6J1DAM7	5.63e-23	49.52	uncharacterized protein LOC111019209 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A2P5BY63	2.44e-12	42.99	CLAVATA3/ESR (CLE)-related protein OS=Trema orientale OX=63057 GN=TorRG33x02_304...	[more]
A0A803QZV9	3.38e-11	41.23	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A2P5A4X1	6.28e-10	36.36	CLAVATA3/ESR (CLE)-related protein OS=Parasponia andersonii OX=3476 GN=PanWU01x1...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..108
None	No IPR available	PANTHER	PTHR34277:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 7..106
IPR039316	CLAVATA3/ESR (CLE)-related protein 25/26	PANTHER	PTHR34277	CLAVATA3/ESR (CLE)-RELATED PROTEIN 26	coord: 7..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9927.T1	Cucsat.G9927.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016021	integral component of membrane