Cucsat.G9837 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9837
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	PB1 domain-containing protein
Location	ctg1673: 397751 .. 401560 (+)
RNA-Seq Expression	Cucsat.G9837
Synteny	Cucsat.G9837

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCCCTCCATTTACATGGAAATCTCATTCCATGGCCGAAATTAGAATTTATTTTACTCCTTCGTCCCTAACGAAGTAACTGTAACTCACAACCCCCCCTTGATTATTGCTTGAATTTACCTTATTTTCCCTAATCAGTTAATTATTCTAACTGTACCACAAATCGGGTTTTCAGGAAAGTGCGTTAATGATATTTTTATTTTATTTTATGTTTATTTTAATTACTGTCCTCCGTGTTCTTTAAGAAAGACCAAAAGTTTGGGTTTTCATTTCTCTCTCCCCTTAGCTTTCTGCTACCAATTTCCAATTCCGCCCTTCCTCCGCCGCACGCCATGACGGAACCACCGCCTCTGCCCATAACTCAACCGATTACGCCGGCGGTGTCGCCTCATCTCAACTATCCGGAGTCGTTGGACTCATCTCCGAGGTCTCGCAACACCGACACGTGGGATGAGCCTCTTGCACCCGGCCCACTCGCCAGTCGTCTCCGTCTTATGTGCAGCTATGGCGGCCATATAGTTCCTCGTCCTCACGATAAGACTCTTGCTATGTATGTGGTGAGACTCGGATCGTGGTTGTCGACCGCCATACGTCTTTATCTGACCTTACTGCGCGTTTGTCGAAGACGCTTCTCAATGGTAGGCCGTTTACCTTGAAATATCAGCTTCCGAATGAGGACTTGGATTCTCTCATTTCTGTTACCACCGACGAGGATTTGGAGAATATGATTGATGAGTATGATCGGACGGCGAGTAATTCGTCTAACCCTGCCGCAAAACCCTCGCGACTTAGGTTGTTTTTGTTCCCGATTAAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTTGAGAGCTCAACTAGTTCTGATGACTGGTTTCTGAATGCTTTGAATGGTGCCGGTTTGCTCAATAGAGGTTTTTCCGACTCTGCGTCGGTCAATTGCTTGCTAGGGCTTGATGATGATGTTGGTGTTAATAACCTCGATTCGGGTCCGAGGGAGGCGGATGGTTCTCAGCCTGGGTCGTTTGGAAATGGTAAGGGTGGAAAACAGGATGTTCATTCCGTTCCTGATTCGCCGATGATCGAGACGACGTCGTCATTTGGTTCTACCTCTTCTTCGCCTTCTCTGGCGAATTTGCCGCCGATTCGGGTTCACGTGGAGGATAGTGGCAACAACGGTGGGGTTGGTGCTGGTGTAGTTCGAGTTCAAGATCAGAAGGTGGGAATTGAGGAGCAATTTTCGCAGATGAGTGTTGGTCAAAAGCAGCACGATGAAGCTTTCGCGGCACTCTCTTCACCGCCTCCTTTGCCTACAACTATCGTGGCTTCTGCGGCGGGCTCTGCAATTCCTGTGAGCTCAGCTGCCGGAGTAGTTGTAGGAGAATATACAAATCGGGTAATCTCCGATGACGAGAGATCCGACCATGGGGCGCCGGTCGGATACCGGAAACCACTACCACCGCAGCCTCAGTCTCTGCCTCCCCAATTGCAGCAGAAGTCAAGTGGACTTGTTGATATACCTTCCCCGGATTCGGTGTCAAGGTACTAATTGCTTGATTTTCTTTATCATTCTATGGTATTACCAATTCTGCTTAATTTCTTTCATCAATTAGAAGTTTGTGATGATTGTTTGTCTGAGTTTGTGCATGTTCTTTCTATTTTATTTTCTTTCTTCAGTGATAGTAGTTTGAACAATCCGATGTCTCGCTCAAAACCTGTGATGTATCAAGAACAAGTTGTTCATCAAATCCCATCTTCAGCTGTTAGGCTTCCTGGCAGTCCAGCAGATCCAAAAGTCAATTTTCCGGATCAGAATGCTCGAGTTCATATTCAACAACAGGTCCAAGAACCAGGATATGTGTTACACTCTCAGTACGATCAGCATCAACACCAGCAACTTCAGCAACAGCAACCACAGCAACAACAACCACAGCAACACCCTCCTCAACCACAGCAATTCATACATGCTGGCGCACATTACATCCATCAGCACCCATCTGGTGCAGTTCAAATTCCTGCATTTTTCCCTGTATATTCTCCTCAGCACCATCATCATCCCCATCAAATTGAACAGCAGTATCCAGTCTACTACCTGCCTGCTAGACAGGGCCAGGCTTATGGCAATTTGCCAGTACAGCAATCTACCATCAGCGAGTCTGCCACTGCTATTCCTCCTGGCCGACCTCAAACTCCTCCCAACCCAACTTTTGGTTACAACTGCAGCTTATAACCACATGAGGAATCCCCCTATTGCAAAAACTGAAATGGCTGCTAATGCATTCAAACAGACAACTACAACTCCTCAGTCGTTAGTTCAGGTTCCCACAACTCAGCATCAGCAACAATATGTTGGCTACAACCAGGGTTACTCTCATATTCAGCATCCATCCCAATCAGTTACTCCTACATCCGCTACTGCAAATTATGCCTACGAATTTTCGGATCCTGCTCATTCTCAGATATACTATACTCAGCCTCTTCCACCTTCTCAGTACCAAGCCATGCCAGCAGCTGCTGTAATGCTGCCTGAAAATTCTGCTCAGCTTCCCACTGACAACATCAAGCAGCAGATGAGAACTTCGCAACCATTATAGTCAGTTCAGAAAGATGAAACAATTTTGGAATAAAGTATTTGGTTTTGCTTACAATTTTCTATTTTATTGTCTGTCTTGTTATTGGTATCTATTGGTTTGTGCATGTATCTGAGATAGAGATAATAAGTATTGTTGTTGTCTTCTGGTTCGTGTGTCATATTATTTGTTTATTGCCATAGAAAATGAAAAAGTGGTCTGGAGATTATAGTTATACTGTAAAAGTTATGAACTCAAACAAGGTGTGCTTGTGCAGTCAATGTGTTATAGAATTAGCAAGAGTTTTTGCATCAATCTTTTTTTTTCCCTTACGTCTCTATTTTTTTACTGATATCAGATAAGCTTTGTTTTATTTGTTATTTCTGTACTAGCATTTCCTTATGTTACTCGGCTCTCCCTGCCAGTCATTTGCTCTTAGCATCCAGCCATTGGAATCAAGATGATCCTTTCCTGCTAGATAATCCCTTAACCTTGACGTTTCTATTTGAATACTTTTGTTACTCTGATCGTGTTCACAGATTCAATGTTGCTGATCATTTTGTGTGTCCTTTACTTAGAAATGGAACGACAAATAAGAAGAATCGCAGGTTTCCTTTTTCAGCATGGGGGAAGGTTCCTGAATTGTAGCAAGCTCATCAAGGAATGAATGCTCATGTTCAGTGGCTCGCGTGAATTCATTGGAAGGCCTATGGCTCATGTTTGACAGGCTGATGTATAACACTCTTCAGAAGGGTGTTTACCACCGGGTTGTTTCCCTTGATATCTTCCGTTCTTTTGTGATAAAGCTATGTGAGGCTGCTTTATGTACTCTGGAAGCTCTTCAACTTTCTTCCTTCTCAAAGCTGTTCTTTAGTTCTTCATACACTGTGCAAGGTACCTGTCGTCATTCGCAAGCTGTAAAGTACGGAATCCAATTAATGCACATATTCTAATTTCTAACATCTCATCCCCATTGCCATTTATTCTTCTTTATGTTTTTTTTCTCATTAAAATGACATCAGAATCCAATCAAAGTTGATTTTATAGCAAGATCTCATTTGAAGATTATGATTGGACCGAACCGGAGTGTTGCTTTTTTTGTGAGATTATAAGCTAATTCAGGTGGGGAATTTGACAGTGTATCTATCAAACATCTTTGAAACTTTTTCACATCTTGAAGTCTTAAATTTGCATGTGCCATCTGTAACTCAAATGCTATAAATTTCATGTGATTATATCT

Coding sequence (CDS)

ATGATTGATGAGTATGATCGGACGGCGAGTAATTCGTCTAACCCTGCCGCAAAACCCTCGCGACTTAGGTTGTTTTTGTTCCCGATTAAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTTGAGAGCTCAACTAGTTCTGATGACTGGTTTCTGAATGCTTTGAATGGTGCCGGTTTGCTCAATAGAGGTTTTTCCGACTCTGCGTCGGTCAATTGCTTGCTAGGGCTTGATGATGATGTTGGTGTTAATAACCTCGATTCGGGTCCGAGGGAGGCGGATGGTTCTCAGCCTGGGTCGTTTGGAAATGGTAAGGGTGGAAAACAGGATGTTCATTCCGTTCCTGATTCGCCGATGATCGAGACGACGTCGTCATTTGGTTCTACCTCTTCTTCGCCTTCTCTGGCGAATTTGCCGCCGATTCGGGTTCACGTGGAGGATAGTGGCAACAACGGTGGGGTTGGTGCTGGTGTAGTTCGAGTTCAAGATCAGAAGGTGGGAATTGAGGAGCAATTTTCGCAGATGAGTGTTGGTCAAAAGCAGCACGATGAAGCTTTCGCGGCACTCTCTTCACCGCCTCCTTTGCCTACAACTATCGTGGCTTCTGCGGCGGGCTCTGCAATTCCTGTGAGCTCAGCTGCCGGAGTAGTTGTAGGAGAATATACAAATCGGGTAATCTCCGATGACGAGAGATCCGACCATGGGGCGCCGGTCGGATACCGGAAACCACTACCACCGCAGCCTCAGTCTCTGCCTCCCCAATTGCAGCAGAAGTCAAGTGGACTTGTTGATATACCTTCCCCGGATTCGGTGTCAAGTGATAGTAGTTTGAACAATCCGATGTCTCGCTCAAAACCTGTGATGTATCAAGAACAAGTTGTTCATCAAATCCCATCTTCAGCTGTTAGGCTTCCTGGCAGTCCAGCAGATCCAAAAGTCAATTTTCCGGATCAGAATGCTCGAGTTCATATTCAACAACAGGTCCAAGAACCAGGATATGTGTTACACTCTCAGTACGATCAGCATCAACACCAGCAACTTCAGCAACAGCAACCACAGCAACAACAACCACAGCAACACCCTCCTCAACCACAGCAATTCATACATGCTGGCGCACATTACATCCATCAGCACCCATCTGGTGCAGTTCAAATTCCTGCATTTTTCCCTGTATATTCTCCTCAGCACCATCATCATCCCCATCAAATTGAACAGCAGTATCCAGTCTACTACCTGCCTGCTAGACAGGGCCAGGCTTATGGCAATTTGCCAGTACAGCAATCTACCATCAGCGAGTCTGCCACTGCTATTCCTCCTGGCCGACCTCAAACTCCTCCCAACCCAACTTTTGGTTACAACTGCAGCTTATAA

Protein sequence

MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGLLNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMIETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQKQHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGYRKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSSAVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAYGNLPVQQSTISESATAIPPGRPQTPPNPTFGYNCSL

Homology

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BLAST of Cucsat.G9837 vs. NCBI nr
Match: XP_004135079.1 (RNA polymerase II degradation factor 1 [Cucumis sativus] >KGN52111.1 hypothetical protein Csa_009068 [Cucumis sativus])

HSP 1 Score: 866 bits (2237), Expect = 3.24e-312
Identity = 449/450 (99.78%), Postives = 449/450 (99.78%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY
Sbjct: 312 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 360
           AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH
Sbjct: 432 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 491

Query: 361 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 420
           PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY
Sbjct: 492 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 551

Query: 421 GNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           GNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 GNLPVQQSTISESATAIPPGRPQTPPNPTL 581

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BLAST of Cucsat.G9837 vs. NCBI nr
Match: XP_008446641.1 (PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo] >KAA0034588.1 RNA polymerase II degradation factor 1 [Cucumis melo var. makuwa] >TYK09140.1 RNA polymerase II degradation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 837 bits (2162), Expect = 7.69e-301
Identity = 438/450 (97.33%), Postives = 442/450 (98.22%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNG VGAGVVRVQDQK+GIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGAVGAGVVRVQDQKLGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           Q DEAF ALSSPPPLPTTIV SAAGSAIPVSSAAG+VVGEYTNRVISDDERSDHGAPVG+
Sbjct: 312 QQDEAFTALSSPPPLPTTIVVSAAGSAIPVSSAAGLVVGEYTNRVISDDERSDHGAPVGH 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV HQIPSS
Sbjct: 372 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV-HQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 360
           AVRLPGSPADPKVNFPDQNARVHIQQQVQE GYVLHSQYDQHQHQQLQQQQPQQQ PQQH
Sbjct: 432 AVRLPGSPADPKVNFPDQNARVHIQQQVQESGYVLHSQYDQHQHQQLQQQQPQQQ-PQQH 491

Query: 361 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 420
           PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY
Sbjct: 492 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 551

Query: 421 GNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           GNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 GNLPVQQSTISESATAIPPGRPQTPPNPTL 579

[Close]

BLAST of Cucsat.G9837 vs. NCBI nr
Match: XP_038892018.1 (putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispida])

HSP 1 Score: 820 bits (2118), Expect = 4.51e-294
Identity = 433/453 (95.58%), Postives = 437/453 (96.47%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSS+DWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSEDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGN+GGV AG VRVQDQKVGIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNSGGVAAGAVRVQDQKVGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAA-GSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVG 240
           Q DEAF ALSSPPPLPTTIVASAA GSAIPV SAAGV VGEYTNRVISDDERSDHGAPVG
Sbjct: 312 QQDEAFTALSSPPPLPTTIVASAAAGSAIPVCSAAGVGVGEYTNRVISDDERSDHGAPVG 371

Query: 241 YRKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPS 300
           YRKPLPPQPQSL PQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIP+
Sbjct: 372 YRKPLPPQPQSLAPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPT 431

Query: 301 SAVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQ- 360
           SAVRLPGSPADPKVN  DQNARVHI QQVQE GYVLHSQYDQHQHQQLQQQQ QQQQPQ 
Sbjct: 432 SAVRLPGSPADPKVNVSDQNARVHIPQQVQESGYVLHSQYDQHQHQQLQQQQQQQQQPQP 491

Query: 361 -QHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQG 420
            QHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQ+EQQYPVYYLPARQG
Sbjct: 492 QQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQMEQQYPVYYLPARQG 551

Query: 421 QAYGNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           QAYGNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 QAYGNLPVQQSTISESATAIPPGRPQTPPNPTL 584

[Close]

BLAST of Cucsat.G9837 vs. NCBI nr
Match: XP_022956700.1 (putative uncharacterized protein DDB_G0268364 isoform X2 [Cucurbita moschata])

HSP 1 Score: 775 bits (2002), Expect = 2.64e-276
Identity = 409/462 (88.53%), Postives = 422/462 (91.34%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFP KPDVSQSIGPILESSTSS+DWFLNALNGAG 
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGPILESSTSSEDWFLNALNGAGF 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGS GNGK GKQD+HSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSLGNGKSGKQDIHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDS N+GG GA  VR+QDQKVG+EEQFSQM +GQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSVNSGGCGAAAVRIQDQKVGVEEQFSQMIIGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           Q DEAF ALSSPPPLPTTIVASAAGSAIPVSSAAGV VG+YTNRVISDDERSDHGAPVGY
Sbjct: 312 QQDEAFTALSSPPPLPTTIVASAAGSAIPVSSAAGVGVGDYTNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           R+PLPPQPQSL PQLQQKSSGLVDIPSPDSVSSD+SLNN MSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RQPLPPQPQSLAPQLQQKSSGLVDIPSPDSVSSDTSLNNQMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQ----------- 360
              LPG+PADP+VN  DQNARVHI QQVQE GYVL S YDQHQHQQLQQ           
Sbjct: 432 TAWLPGNPADPEVNISDQNARVHIPQQVQESGYVLQSHYDQHQHQQLQQLQQQQQQQQLQ 491

Query: 361 -QQPQQQQPQQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYP 420
            QQ QQQQPQQHP QPQQFIHAGAHYIHQHPSGAV IPAFFPVYSPQ HHHPHQ+EQQYP
Sbjct: 492 QQQQQQQQPQQHPSQPQQFIHAGAHYIHQHPSGAVPIPAFFPVYSPQPHHHPHQMEQQYP 551

Query: 421 VYYLPARQGQAYGNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           VYYLPARQGQAYGNLPVQQS+ISESATAIPPGRPQTPPNPT 
Sbjct: 552 VYYLPARQGQAYGNLPVQQSSISESATAIPPGRPQTPPNPTL 593

[Close]

BLAST of Cucsat.G9837 vs. NCBI nr
Match: XP_022966093.1 (RNA polymerase II degradation factor 1-like [Cucurbita maxima])

HSP 1 Score: 762 bits (1968), Expect = 7.51e-271
Identity = 407/481 (84.62%), Postives = 420/481 (87.32%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFP KPDVSQSIGPILESSTSS+DWFLNALNGAG 
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGPILESSTSSEDWFLNALNGAGF 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGS GNGK GKQD+HSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSLGNGKSGKQDIHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDS N+GG GAG VR+QDQKVGIEEQFSQM +GQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSVNSGGGGAGAVRIQDQKVGIEEQFSQMIIGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
             DEAF ALSSPPPLPTTIVASAAGSAIPVS AA V VG+Y NRVISDDERSDHGAPVGY
Sbjct: 312 LQDEAFTALSSPPPLPTTIVASAAGSAIPVSLAAAVGVGDYMNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           R+PLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSD+SLNN MSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RQPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDTSLNNQMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQ----------- 360
             RLPG+P+DP+VN  DQNARVHI QQVQE GYVL S YDQHQHQQLQQ           
Sbjct: 432 TARLPGNPSDPEVNISDQNARVHIPQQVQESGYVLQSHYDQHQHQQLQQLQQQQQLQQQQ 491

Query: 361 --------------------QQPQQQQPQQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFF 420
                               QQ QQQQ QQHP QPQQFIHAGAHYIHQHPSGAV IPAFF
Sbjct: 492 QLQQQHQQHQQQQLQQQQQQQQQQQQQQQQHPSQPQQFIHAGAHYIHQHPSGAVPIPAFF 551

Query: 421 PVYSPQHHHHPHQIEQQYPVYYLPARQGQAYGNLPVQQSTISESATAIPPGRPQTPPNPT 450
           PVYSPQ HHHPHQ+EQQYPVYYLPARQGQAYGNLPVQQS+ISESATAIPPGRPQTPPNPT
Sbjct: 552 PVYSPQPHHHPHQMEQQYPVYYLPARQGQAYGNLPVQQSSISESATAIPPGRPQTPPNPT 611

[Close]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL
Match: A0A0A0KWH3 (PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610450 PE=4 SV=1)

HSP 1 Score: 866 bits (2237), Expect = 1.57e-312
Identity = 449/450 (99.78%), Postives = 449/450 (99.78%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY
Sbjct: 312 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 360
           AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH
Sbjct: 432 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 491

Query: 361 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 420
           PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY
Sbjct: 492 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 551

Query: 421 GNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           GNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 GNLPVQQSTISESATAIPPGRPQTPPNPTL 581

[Close]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL
Match: A0A5A7SVC4 (RNA polymerase II degradation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001310 PE=4 SV=1)

HSP 1 Score: 837 bits (2162), Expect = 3.72e-301
Identity = 438/450 (97.33%), Postives = 442/450 (98.22%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNG VGAGVVRVQDQK+GIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGAVGAGVVRVQDQKLGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           Q DEAF ALSSPPPLPTTIV SAAGSAIPVSSAAG+VVGEYTNRVISDDERSDHGAPVG+
Sbjct: 312 QQDEAFTALSSPPPLPTTIVVSAAGSAIPVSSAAGLVVGEYTNRVISDDERSDHGAPVGH 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV HQIPSS
Sbjct: 372 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV-HQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 360
           AVRLPGSPADPKVNFPDQNARVHIQQQVQE GYVLHSQYDQHQHQQLQQQQPQQQ PQQH
Sbjct: 432 AVRLPGSPADPKVNFPDQNARVHIQQQVQESGYVLHSQYDQHQHQQLQQQQPQQQ-PQQH 491

Query: 361 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 420
           PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY
Sbjct: 492 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 551

Query: 421 GNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           GNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 GNLPVQQSTISESATAIPPGRPQTPPNPTL 579

[Close]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL
Match: A0A1S3BF26 (RNA polymerase II degradation factor 1 OS=Cucumis melo OX=3656 GN=LOC103489312 PE=4 SV=1)

HSP 1 Score: 837 bits (2162), Expect = 3.72e-301
Identity = 438/450 (97.33%), Postives = 442/450 (98.22%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL
Sbjct: 132 MIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNG VGAGVVRVQDQK+GIEEQFSQMSVGQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGAVGAGVVRVQDQKLGIEEQFSQMSVGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           Q DEAF ALSSPPPLPTTIV SAAGSAIPVSSAAG+VVGEYTNRVISDDERSDHGAPVG+
Sbjct: 312 QQDEAFTALSSPPPLPTTIVVSAAGSAIPVSSAAGLVVGEYTNRVISDDERSDHGAPVGH 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV HQIPSS
Sbjct: 372 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQV-HQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQQQPQQQQPQQH 360
           AVRLPGSPADPKVNFPDQNARVHIQQQVQE GYVLHSQYDQHQHQQLQQQQPQQQ PQQH
Sbjct: 432 AVRLPGSPADPKVNFPDQNARVHIQQQVQESGYVLHSQYDQHQHQQLQQQQPQQQ-PQQH 491

Query: 361 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 420
           PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY
Sbjct: 492 PPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYPVYYLPARQGQAY 551

Query: 421 GNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           GNLPVQQSTISESATAIPPGRPQTPPNPT 
Sbjct: 552 GNLPVQQSTISESATAIPPGRPQTPPNPTL 579

[Close]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL
Match: A0A6J1GYH7 (PB1 domain-containing protein OS=Cucurbita moschata OX=3662 GN=LOC111458340 PE=4 SV=1)

HSP 1 Score: 775 bits (2002), Expect = 1.28e-276
Identity = 409/462 (88.53%), Postives = 422/462 (91.34%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFP KPDVSQSIGPILESSTSS+DWFLNALNGAG 
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGPILESSTSSEDWFLNALNGAGF 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGS GNGK GKQD+HSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSLGNGKSGKQDIHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDS N+GG GA  VR+QDQKVG+EEQFSQM +GQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSVNSGGCGAAAVRIQDQKVGVEEQFSQMIIGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
           Q DEAF ALSSPPPLPTTIVASAAGSAIPVSSAAGV VG+YTNRVISDDERSDHGAPVGY
Sbjct: 312 QQDEAFTALSSPPPLPTTIVASAAGSAIPVSSAAGVGVGDYTNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           R+PLPPQPQSL PQLQQKSSGLVDIPSPDSVSSD+SLNN MSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RQPLPPQPQSLAPQLQQKSSGLVDIPSPDSVSSDTSLNNQMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQ----------- 360
              LPG+PADP+VN  DQNARVHI QQVQE GYVL S YDQHQHQQLQQ           
Sbjct: 432 TAWLPGNPADPEVNISDQNARVHIPQQVQESGYVLQSHYDQHQHQQLQQLQQQQQQQQLQ 491

Query: 361 -QQPQQQQPQQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFFPVYSPQHHHHPHQIEQQYP 420
            QQ QQQQPQQHP QPQQFIHAGAHYIHQHPSGAV IPAFFPVYSPQ HHHPHQ+EQQYP
Sbjct: 492 QQQQQQQQPQQHPSQPQQFIHAGAHYIHQHPSGAVPIPAFFPVYSPQPHHHPHQMEQQYP 551

Query: 421 VYYLPARQGQAYGNLPVQQSTISESATAIPPGRPQTPPNPTF 450
           VYYLPARQGQAYGNLPVQQS+ISESATAIPPGRPQTPPNPT 
Sbjct: 552 VYYLPARQGQAYGNLPVQQSSISESATAIPPGRPQTPPNPTL 593

[Close]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL
Match: A0A6J1HQW4 (RNA polymerase II degradation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465567 PE=4 SV=1)

HSP 1 Score: 762 bits (1968), Expect = 3.64e-271
Identity = 407/481 (84.62%), Postives = 420/481 (87.32%), Query Frame = 0


Query: 1   MIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGPILESSTSSDDWFLNALNGAGL 60
           MIDEYDRTASNSSNPAAKPSRLRLFLFP KPDVSQSIGPILESSTSS+DWFLNALNGAG 
Sbjct: 132 MIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGPILESSTSSEDWFLNALNGAGF 191

Query: 61  LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSFGNGKGGKQDVHSVPDSPMI 120
           LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGS GNGK GKQD+HSVPDSPMI
Sbjct: 192 LNRGFSDSASVNCLLGLDDDVGVNNLDSGPREADGSQPGSLGNGKSGKQDIHSVPDSPMI 251

Query: 121 ETTSSFGSTSSSPSLANLPPIRVHVEDSGNNGGVGAGVVRVQDQKVGIEEQFSQMSVGQK 180
           ETTSSFGSTSSSPSLANLPPIRVHVEDS N+GG GAG VR+QDQKVGIEEQFSQM +GQK
Sbjct: 252 ETTSSFGSTSSSPSLANLPPIRVHVEDSVNSGGGGAGAVRIQDQKVGIEEQFSQMIIGQK 311

Query: 181 QHDEAFAALSSPPPLPTTIVASAAGSAIPVSSAAGVVVGEYTNRVISDDERSDHGAPVGY 240
             DEAF ALSSPPPLPTTIVASAAGSAIPVS AA V VG+Y NRVISDDERSDHGAPVGY
Sbjct: 312 LQDEAFTALSSPPPLPTTIVASAAGSAIPVSLAAAVGVGDYMNRVISDDERSDHGAPVGY 371

Query: 241 RKPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDSSLNNPMSRSKPVMYQEQVVHQIPSS 300
           R+PLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSD+SLNN MSRSKPVMYQEQVVHQIPSS
Sbjct: 372 RQPLPPQPQSLPPQLQQKSSGLVDIPSPDSVSSDTSLNNQMSRSKPVMYQEQVVHQIPSS 431

Query: 301 AVRLPGSPADPKVNFPDQNARVHIQQQVQEPGYVLHSQYDQHQHQQLQQ----------- 360
             RLPG+P+DP+VN  DQNARVHI QQVQE GYVL S YDQHQHQQLQQ           
Sbjct: 432 TARLPGNPSDPEVNISDQNARVHIPQQVQESGYVLQSHYDQHQHQQLQQLQQQQQLQQQQ 491

Query: 361 --------------------QQPQQQQPQQHPPQPQQFIHAGAHYIHQHPSGAVQIPAFF 420
                               QQ QQQQ QQHP QPQQFIHAGAHYIHQHPSGAV IPAFF
Sbjct: 492 QLQQQHQQHQQQQLQQQQQQQQQQQQQQQQHPSQPQQFIHAGAHYIHQHPSGAVPIPAFF 551

Query: 421 PVYSPQHHHHPHQIEQQYPVYYLPARQGQAYGNLPVQQSTISESATAIPPGRPQTPPNPT 450
           PVYSPQ HHHPHQ+EQQYPVYYLPARQGQAYGNLPVQQS+ISESATAIPPGRPQTPPNPT
Sbjct: 552 PVYSPQPHHHPHQMEQQYPVYYLPARQGQAYGNLPVQQSSISESATAIPPGRPQTPPNPT 611

The following BLAST results are available for this feature:

BLAST of Cucsat.G9837 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G9837 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135079.1	3.24e-312	99.78	RNA polymerase II degradation factor 1 [Cucumis sativus] >KGN52111.1 hypothetica...	[more]
XP_008446641.1	7.69e-301	97.33	PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo] >KAA0034588.1 R...	[more]
XP_038892018.1	4.51e-294	95.58	putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispi...	[more]
XP_022956700.1	2.64e-276	88.53	putative uncharacterized protein DDB_G0268364 isoform X2 [Cucurbita moschata]	[more]
XP_022966093.1	7.51e-271	84.62	RNA polymerase II degradation factor 1-like [Cucurbita maxima]	[more]

BLAST of Cucsat.G9837 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWH3	1.57e-312	99.78	PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610450 PE=4 SV...	[more]
A0A5A7SVC4	3.72e-301	97.33	RNA polymerase II degradation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BF26	3.72e-301	97.33	RNA polymerase II degradation factor 1 OS=Cucumis melo OX=3656 GN=LOC103489312 P...	[more]
A0A6J1GYH7	1.28e-276	88.53	PB1 domain-containing protein OS=Cucurbita moschata OX=3662 GN=LOC111458340 PE=4...	[more]
A0A6J1HQW4	3.64e-271	84.62	RNA polymerase II degradation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..283
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 339..365
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 434..456
None	No IPR available	PANTHER	PTHR31066	OS05G0427100 PROTEIN-RELATED	coord: 1..449
None	No IPR available	PANTHER	PTHR31066:SF27	EXPRESSED PROTEIN	coord: 1..449

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9837.T1	Cucsat.G9837.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006414	translational elongation
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003746	translation elongation factor activity