Cucsat.G9616 (gene) Cucumber (B10) v3

Overview
NameCucsat.G9616
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionTranscription termination factor MTERF5
Locationctg1673: 3500925 .. 3507643 (-)
RNA-Seq ExpressionCucsat.G9616
SyntenyCucsat.G9616
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACCTTATTTAACTTGTTCAGAGGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAATACTGCAAAGTTAGATCCAGCTTCTCTAATATCTTACCCTGTTCTATTCAAGTATTCAGTCCACAAACGGCTCCAACCGAGGTGCAAAGTTATTGAGGTTTTGAAGATGAAAAATCTTCTTAAAATCAAAAGGATTGCTTCGGTATTTGTGAAAGGGGAGAAAGAATTTGTGGAGAAATACATAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAAGGGCAATGTGGAAGCAGAAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATCTTCATCATCATCTTCTTCCAACTTGAGGCTCTTACATAATTCTTTCAACTTTTCTAAGTTTGTGTGTACTAATTTTGTATCTAATGATCTTGAAATGGACGTGGTTTTTCTCAATTACATGATACATTATTCCAAATAACAATCTTGTTATTTTCATATCTAGGGATCAATTGAATTGGATAGAAAAAAGAAAAAAGTGTTTATAACTTATTTTTATTTAAACCTTTGAAATGCATCTTTAATTAACTTTCTTTAAAATAACTTTTTCTTGAAAGGAACACTTAATACAAATGTATTTCGAACACACTCTTAATATATAATACCAATTAAATAAATTTTTTTTCTCGCAATTATTAGGTTTTTACTAACAACTATTTATTTAGTTAGATGAGATCAAATTTGCAAGCAGAAAATTGAAGAAAAAAAATACTATCAACCATCTTTTTCCCTTTTATTTTTTTTATTAAAAAAGTAGTTGAAAAAAAGCATAGAATAAAACCATTTGATTTGTTTCTTTAAATGATGATCCGACTTTACAAGTAGAATGTATAGTTTGCGAGTAAAAAATGTGGACTTCAAACAATCCTATCATTGTTGTAAAAAAGAAACAATTAATAATTTCATTCTCTAACTTGTTGAAAGAACGAAACCTCTATTGTATTATTTGTTTACCTTCGATTTAATGAGTGGTTTTGTTAAATCTCTTAAGAAATTATGAGTTCTTGACGATGTAAAACCTAAAAAAAAAATAGAAGATTGTAATCCTTAATAATAATATAAATAGTTTAAACAAAAGAATTCTTTTCAAACAGTTTTACTTCTTTCCCGGTATAACTAACAAGGACGAGAACGTAGGCTTAGAGTTCACCAATAATCCCCACAAGAACAAATTCCATTTTTGAAATGGTGAAATCTTTGCATATCTCTTACTATGATCTCTCTTCCAGTCACTAGTGAGATATACTTGGTTGCATTGTGACAATCACCACAAACTCGTAGGTTCTTTCGGACATGTATCGTAGTACCGGGACTAGTATTTAAAAGACCAAAAGCAATGGCGAGCTTCTCACTATGGCTATTGAGAAGCTGCTCCTGCACATCGTCCTCTACGTCGAGAATCAAGTTAGTGTCGGGCACATAGCCTGCTGCCTTGATTTCATACACAAGTTCTTCAAGAAAGGCATAAATTCTCTTGGATTGTGGATGAGTTGTGCTCCCTGAATAGAAGGAATGAACTTCATTTCTCAATTCCACCACGCTACAACCAGGAGTTTTCTTAAGCCCTTTCTTCTCCATTGTTTTTCTTACTTCGGCTACCTTACTCCATTTTGAAGTAGAAGCATAAATGTTTGCAAGCAAGACATGGTAGCCACCTTCATCAGGGTTCAACTCAAACAATTTTTTAGCTGCTTTCTCTCCAACTTCAATATTTTTGTGAATTTTACAAGCACCCAACATGGCACCATACACAGTAATCCCTGGACTAATAGGCATGTTTTCTATAAAATCCCAGGCTTCTTTGATCCTGCCAGCTCGACCAAGAAGATCGACCATAGCGCCATAGTGATCCATTGAAGGTTCTAATCCATAGTCTTGTTTCATGCTCTTGAAATGGCGAAGTCCTTCGTCCACCAGACCTGAGTGACTGCAAGCAGAGATGACAGATAAATATGTAATATCATTTGGTTCAACTGCTCCCTTTTTCATTTTATCAAAGAGATCTAGAGCAGCTCTTCCAAGACCGTGTGTTCCATACCCATCTATCATCGCATTCCATGTTATGACATGTCGGTCACTGATCATGTCGAAAAGCTTCCTTGCCATATGAATCGCTCCACATTTTGAATACATGTCCACAAGAGCGGTTGTCACAAAAATATTTTTGTCCAAACAAGATCTAATAATTAGCCCGTGAATCCATTTTGCATGGCGAGTAACTGATAATTCTGCAAGAGCAGGTATCACACTTACCATTGTGAATGAATCAGGTTTCATACCTAGAGATTTCATTTCAGAAAAACAGTTCAAAGCCTCACTCACTCTTCCATTCTGAGCATAACCCAATATCATGGCATTCCATGAGACATGTGTTCTTCCATTTAAGTTGTTGAAAATGTCAGAAGCTATGTCAACTCTCTTACACTTGGAATACATGGAAATCAATGAGTTCATTACAGAGATGTCAGAACCAAGATTTAACTGATCCACAAACTTATGAACAAACTTCCCCCTCTCAAGATCACCCAAATCAGCACAGGCATGCAAAGCTTCCATAATGGTTACACCGGTTGGGTCTATCCCTTCTTCCAACATCTTCTCAAAAACTGCAATAGCCTTCTCCGGTTCACCATTTTGAACATATCCATCCATCATGGAATTCCATGACACAACAGTTTTTTGATCCATTCCATCAAAAATCAATCTAGCTGTCTCCACTGACCCGCACTTTGAGTACATATCAGCCAAAGCAGTTGAAATGTTAACAAGCTTTGCAAACCCAGCTCTAATGGCATATCCATGAATTGACTTCCCCACCATTAACAATCCAACATCAGCAGCAGCAGGCAAAACAGTAACCAAGGTAATCGAATCAGGCCTTTGGCCTTCATCCTGCATTCTTAAAACCAACTCCAACGCCTTTTTAGCAAACCCATTTTGAGAAAAACCAGCTATAATCGTATTCCAAGAAACCAAATCTCTCTCGGGCATTCTGTCAAACATCTTGTACGCATCATCAATCTGCCTGCACTTAGCGTACATATTCACAACGCCGGTCATTGCAAACACATTAGCCGCAAACGAATTCGTAATTAGCTGCCCATGAATCTCCTTTCCCCTCTTTAAATCCGCGTTATCGCCACAAACCTTCAACAAATAAGTAAAATTATACACAACAGGCTTAACATCATCGTACCTCATACGACAAAGAAAAGCAAGTGCAGTCTCCAACGACGAGTTCTTCGCATACCCTTTTAACATCGTGTGGTAAAGAGCGTCAAGTTTGTCATCTATTGGCTCGAAAACACGAGCAGCCTCGTTGATGCTGCCATACTTGGAGAATAAGCTGACGAGCTTGGTTTGAAAAAGGTGTTCGTTGTAGAGGCCATTTTTTATGACTAGAGGGATAATTTGGTGGAGCTCTTTCATAGAAGTGCAGAGCTCGAGAAGAACAGCGGCTGGGTGCTTGTAGACATGAGAGGGGATATGGGCTCGTTCCGAAAGAGTGTGAAATGGAAGAGGAGATGATGGAATGGTAATTGAGCTTGATTTCAATGGGGTTTGATTGTGAGCTTTGACAATGGCGATGGGTGGAACAGAGGACGACCTCATGTCCTCTTTCTTCTATCTATGATTTTTGCACAATTCTTCATTTTATTTCTTCCGTCCAAAATTTCCATCTTATGTTTAATAATAATCTCTACCACTCAAACCAAATTTACATCCTAATTCTTAATAATTCATAGCTTTGAATCATTCATTCCAACTTTCTAAAGTTATGAAAGTGTTTTCTTTTTCTTCTAAAACCCAAAATATGTTATAAACAAAGTCGTAAACATACATACGTATATATAGATTGGATTTAAGCAAACATATGTAGTTCATGTTGGAACATACATAAATTTTAAATGATTTCTTGAAACATTATATACATTTAATTTCTTACATTTACCTAAAATCTACGGTATAAATGCTACTTTGTACATGTATTTATTATTTCATATAATCTAAAATTGTATTATAGTGTGTAAATATTTTAAGTATTTAATTTGTAAATTTATTTGGTCTAAAATTAATTTTCAATTGCTTTATAATTTGTAAACATATTTGCTTTGAATGAAAATAATATGGTTTTCTTCTTTTTACTTTTCAATTTTTCAAGTACGCATCCTTCCAAAAAAATAGTAAAATAAATTAATGTATATTATTAATATTTGTTATGGATAGAATTTGAAATATCACATTTATTATTTTTTTATAATTTTTTGTTATAATAATATATTGTTTATATGTGCATGTGTATTTTTAGAAATTCATGTACGTGTAAGATAAATATAATAAAAATAGTCCTTTATTTCTTTGTTCTCTTATATGAATTAATATAACAAAATATCAATTCAAAAACTTAACTTTTAAAAATATATATTAAATTTATTTGAGTAGTATTTATTTGATTAAATATAGCAACCTTTATTTCAATTTATATATGTATTTTTTAACTTCAACACAACGTGAAAACGCTTAGGGCATTTGGCCCTAAAACTATGGACTATGGTTAACCCACCTCACTTTTGAGGGAAAGGTTTTCCATAACCTTCATTTATCTCTTTTTCGCTGTTTCCCTTCTTTAACCTTCATTCCCGAAACACATGCTATCATAATATTTTCTCCAAACGTATACTATCATAACATTATCTATTATAATTCTTTTTCCAAATGCATACTATCATGACACTACCTATCATAATATTTCTTCAAATGCATATTATCATAAGAATAGGAGCATTATAATACTAGGATTATCATAACACTAACCCTTTCATAAATTACTTATTCCCCCAAACGTCTCCTTACTCCAAACTTGTACCATCTATCAGGGTTAGAGGGAGAAAGGTTGGTTTTTCGTTTGAAGTAATTAGATTTTAAGATTTGTTTAATTCACCTGCAAACTACAATTGTAAAATATAATTTGATTGGAAGAATTAGGTATTCTTCTTGATAGATTTCAAGATTTGGTAGATTTTGATAATTGGTTTTTAATTTTGGTTATTTTGATAATGGCTCTAAATTGGATTTTCTATATATCACAAAATTGAAAAGAAAAAAACCCTTTAAAATACGTTTAGGGAAGAAGAAAAAAAAAAATTCACAATCTATATTCATCTGGGCTTTTCCACTCTATCGATGTTCACGGAGCTCAAAACCCTAATCCAAAACCTTGCTTGAATTTCTTCAATCCAATCTCAAAATGTCCAAAATTCCCTCCACTTTTCTTCTACATTTCATCCATAAACGTTTTCTCAATGCCATTTCTACTTCTACATTGCCTTTGCCCTCTGTTTCTACCATCCAATTCCTCACTAATTCATGTGCCCTTTCTTCAGAATCTCCTACTTCCAAAGGTCGAAAGCTCCAGTTCGATGAAAAACACATCCAGCAGTACGAAGCCACTATCGGTTTCTTGAAATCACATGGATTCGAGAATTCACAGATTGCCAAGTTGGTCTCTAGGAAACCTCAGATTCTTCAATGCAAAGTACCAAACAATCTGCAGCCTAAATTTGAGTTCCTCCAGGAAATCGGATTTATCGGTCCTTTACTTCCTAAGCTAATTGCATCAAACCCTTTCATTCTTCTCAGGAGCTTGGATTCTCATTTGAAACCATCCTTTTTTTTCTTGAAGGAAATTCTTGGATCGGATGAACAAGTAACTGTTGCTATTTCTCGTTCTACAAGACTTCTAACCTTTGATTTTAAGGGTATCTTAAAACCTAACGTTGATTTTTTGGTCAGCGAAGGAGTGCCTTCTAGGAATATAGCTAAACTGTTTGCATTGCAGCCTCTAGCTCTTATGAAAAAGGTTGATAGAATGATTAATGCAGTGAAAGTGGTTAAAGAAATAGGCTTTGAACCAAAGGCTCGCATGTTTGTTTATGCAGTTCTAACAAGGCTTTCATTGAGTGATTCAAACTGGAAGAAGAAAATAGATATTTTGAAGAGTTTGGGATGGTCTGAGAATGAGATTTTTACAGCGTTTAAGAAATATCCACTTTTCATAGGTTGTTCAGAGGAGAAAATGAGGGATGTTGCAGATTTCTGTCTCAACACTTCAAAGTTGGATCCAGGAACTCTAATTACTTACCCTGTGTTCTTCAAATCTTCAGTCGACAAGAAGCTCCGACCGAGGTACAAAGTTATTGAGGTTTTGAAGGTGAAAAATCTCCTTAAGAACAAAAAGATTGCTTCCCTATTTGTGAAAGGGGAGAGAGAATTTGTGGAGAAATATGTTGTTAAGCATTTGAATGAAATCCCAAATCTGATGGACATATACAGGGGCAATGTGGAAGCAGAAGCCGAAACCAAAAGTGTTGTATAGGATTGGAAAGTTGTAAGTTAACAATCTTCATCATGATCTTCAAATGGAGAAGTCTGTTGTCTTCCCCTTCCAATTTGAGGCTCTTACATAAATGTTTTGGTATATATTTGTTAGAGCTGTTGATCTTGAATTCTGAGGCCTTGTTTTCCTCTTCCTAATCTCTTACTCTTTCCTTCAACTTTTATAAGTTTGTAGACTAATTTTGAATCTAATGATCTTGAAATGGAGATGAGAGACGCGATTTCTATATCATTTTTATGCTTAGAATG

Coding sequence (CDS)

CCACCTTATTTAACTTGTTCAGAGGAGAAATTGAGGGATGTTGCAGATTTCTGTTCCAATACTGCAAAGTTAGATCCAGCTTCTCTAATATCTTACCCTGTTCTATTCAAGTATTCAGTCCACAAACGGCTCCAACCGAGGTGCAAAGTTATTGAGGTTTTGAAGATGAAAAATCTTCTTAAAATCAAAAGGATTGCTTCGGTATTTGTGAAAGGGGAGAAAGAATTTGTGGAGAAATACATAGTTAAGCATTTGGATGAAATCCCAAATCTGATGGACATATACAGGGGCAATGTGGAAGCAGAAGCCGAAACCAAAAGTGTTGTATAG

Protein sequence

PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLLKIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV
Homology
[Close]
BLAST of Cucsat.G9616 vs. NCBI nr
Match: XP_031741755.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucumis sativus] >KGN52212.2 hypothetical protein Csa_007927 [Cucumis sativus])

HSP 1 Score: 216 bits (549), Expect = 6.13e-67
Identity = 108/109 (99.08%), Postives = 109/109 (100.00%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL
Sbjct: 268 PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 327

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIY+GNVEAEAETKSVV
Sbjct: 328 KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYKGNVEAEAETKSVV 376

[Close]
BLAST of Cucsat.G9616 vs. NCBI nr
Match: XP_031742250.1 (uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharacterized protein LOC116404132 [Cucumis sativus])

HSP 1 Score: 181 bits (458), Expect = 4.83e-55
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           PPY TCSEEK+RDVADFCSNTA LDP +LISYPVLFKYSV KRLQPR KV+EVLK+KNLL
Sbjct: 121 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 180

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           KIK+IAS FVKGE  FVEKY+VKHLDEIPNLMDIYRGN  A AETKSVV
Sbjct: 181 KIKKIASAFVKGEGYFVEKYVVKHLDEIPNLMDIYRGN--AAAETKSVV 227

[Close]
BLAST of Cucsat.G9616 vs. NCBI nr
Match: KAE8648644.1 (hypothetical protein Csa_008356 [Cucumis sativus])

HSP 1 Score: 181 bits (458), Expect = 1.81e-53
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           PPY TCSEEK+RDVADFCSNTA LDP +LISYPVLFKYSV KRLQPR KV+EVLK+KNLL
Sbjct: 251 PPYFTCSEEKMRDVADFCSNTAMLDPGTLISYPVLFKYSVEKRLQPRYKVLEVLKVKNLL 310

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           KIK+IAS FVKGE  FVEKY+VKHLDEIPNLMDIYRGN  A AETKSVV
Sbjct: 311 KIKKIASAFVKGEGYFVEKYVVKHLDEIPNLMDIYRGN--AAAETKSVV 357

[Close]
BLAST of Cucsat.G9616 vs. NCBI nr
Match: XP_031741756.1 (transcription termination factor MTERF4, chloroplastic [Cucumis sativus] >KAE8648637.1 hypothetical protein Csa_008513 [Cucumis sativus])

HSP 1 Score: 174 bits (442), Expect = 7.02e-51
Identity = 86/109 (78.90%), Postives = 100/109 (91.74%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P ++ CSEEK+RDVADFC NT+KLDP +LI+YPV FK SV K+L+PR KVIEVLK+KNLL
Sbjct: 267 PLFIGCSEEKMRDVADFCLNTSKLDPGTLITYPVFFKSSVDKKLRPRYKVIEVLKVKNLL 326

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           K K+IAS+FVKGE+EFVEKY+VKHL+EIPNLMDIYRGNVEAEAETKSVV
Sbjct: 327 KNKKIASLFVKGEREFVEKYVVKHLNEIPNLMDIYRGNVEAEAETKSVV 375

[Close]
BLAST of Cucsat.G9616 vs. NCBI nr
Match: XP_031741759.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 168 bits (425), Expect = 9.31e-49
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           PPYLTCSE+KLR+VADFC NTAKLDP +LISYPVLFKYSV KRL+PR KV+EVLK+KNLL
Sbjct: 229 PPYLTCSEDKLRNVADFCFNTAKLDPGTLISYPVLFKYSVEKRLRPRYKVLEVLKVKNLL 288

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           K ++ A +F +GE+EFVE YIVKHLDEIPNLMDIYRGNV +E  TKSV+
Sbjct: 289 KNEKSAQLFFRGEREFVENYIVKHLDEIPNLMDIYRGNVASE--TKSVL 335

[Close]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match: A0A1S4DWY9 (uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=3 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.00e-48
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P YL CSE+K+RDVADFC NTAKLDP ++ISYPV FK SV KRL+PR KV+EVLK+KNLL
Sbjct: 83  PNYLGCSEKKMRDVADFCFNTAKLDPGTVISYPVFFKSSVDKRLRPRYKVLEVLKVKNLL 142

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSV 108
           K K+IA V ++GEK FVEKY+VKHLDEIPNLMDIYRGNVEAE  TKSV
Sbjct: 143 KNKKIAGVLLQGEKTFVEKYVVKHLDEIPNLMDIYRGNVEAE--TKSV 188

[Close]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match: A0A1S4DW22 (transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 163 bits (412), Expect = 1.00e-47
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P +LTCSEEK+RD+ADFC NTAKLDP +LISYP  F YSVHKRLQPR KV+EVLKMKNLL
Sbjct: 175 PRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLL 234

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           K K I  +FV+GE+ FVEKYIVKH D+IPNL+DIY GNV+AE  TKSV+
Sbjct: 235 KTKNIGLLFVEGERRFVEKYIVKHFDKIPNLIDIYLGNVKAE--TKSVL 281

[Close]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match: A0A1S3BEV9 (transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488866 PE=3 SV=1)

HSP 1 Score: 163 bits (412), Expect = 9.82e-47
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P +LTCSEEK+RD+ADFC NTAKLDP +LISYP  F YSVHKRLQPR KV+EVLKMKNLL
Sbjct: 267 PRFLTCSEEKMRDIADFCLNTAKLDPGTLISYPQFFNYSVHKRLQPRYKVLEVLKMKNLL 326

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           K K I  +FV+GE+ FVEKYIVKH D+IPNL+DIY GNV+AE  TKSV+
Sbjct: 327 KTKNIGLLFVEGERRFVEKYIVKHFDKIPNLIDIYLGNVKAE--TKSVL 373

[Close]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match: A0A5A7SSP1 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003130 PE=3 SV=1)

HSP 1 Score: 162 bits (411), Expect = 1.38e-46
Identity = 83/108 (76.85%), Postives = 94/108 (87.04%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P YL CSE+K+RDVADFC NTAKLDP ++ISYPV FK SV KRL+PR KV+EVLK+KNLL
Sbjct: 267 PNYLGCSEKKMRDVADFCFNTAKLDPGTVISYPVFFKSSVDKRLRPRYKVLEVLKVKNLL 326

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSV 108
           K K+IA V ++GEK FVEKY+VKHLDEIPNLMDIYRGNVEAE  TKSV
Sbjct: 327 KNKKIAGVLLQGEKTFVEKYVVKHLDEIPNLMDIYRGNVEAE--TKSV 372

[Close]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match: A0A5D3CXX8 (Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G003080 PE=3 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.95e-46
Identity = 84/109 (77.06%), Postives = 94/109 (86.24%), Query Frame = 0 

Query: 1   PPYLTCSEEKLRDVADFCSNTAKLDPASLISYPVLFKYSVHKRLQPRCKVIEVLKMKNLL 60
           P YL CSEEK+RDVADFC NTAKLDP +LISYP LFK S  KRL+PR KV+EVLK+KNLL
Sbjct: 267 PNYLGCSEEKIRDVADFCFNTAKLDPGTLISYPKLFKLSFDKRLRPRYKVLEVLKVKNLL 326

Query: 61  KIKRIASVFVKGEKEFVEKYIVKHLDEIPNLMDIYRGNVEAEAETKSVV 109
           K K+IASV V+GE+ FVEKY+VKHLDEIPNLMDIY GNVEAE  TKSV+
Sbjct: 327 KNKKIASVLVEGERRFVEKYVVKHLDEIPNLMDIYVGNVEAE--TKSVL 373

The following BLAST results are available for this feature:
BLAST of Cucsat.G9616 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G9616 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031741755.16.13e-6799.08transcription termination factor MTERF6, chloroplastic/mitochondrial-like [Cucum... [more]
XP_031742250.14.83e-5584.40uncharacterized protein LOC116404132 [Cucumis sativus] >XP_031742251.1 uncharact... [more]
KAE8648644.11.81e-5384.40hypothetical protein Csa_008356 [Cucumis sativus][more]
XP_031741756.17.02e-5178.90transcription termination factor MTERF4, chloroplastic [Cucumis sativus] >KAE864... [more]
XP_031741759.19.31e-4977.06transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus][more]
BLAST of Cucsat.G9616 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S4DWY91.00e-4876.85uncharacterized protein LOC107990789 OS=Cucumis melo OX=3656 GN=LOC107990789 PE=... [more]
A0A1S4DW221.00e-4774.31transcription termination factor MTERF5, chloroplastic-like isoform X2 OS=Cucumi... [more]
A0A1S3BEV99.82e-4774.31transcription termination factor MTERF5, chloroplastic-like isoform X1 OS=Cucumi... [more]
A0A5A7SSP11.38e-4676.85Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3CXX81.95e-4677.06Transcription termination factor MTERF2 OS=Cucumis melo var. makuwa OX=1194695 G... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 156..186
e-value: 14.0
score: 14.6
coord: 123..154
e-value: 100.0
score: 11.7
coord: 87..118
e-value: 85.0
score: 12.0
coord: 18..49
e-value: 2.6
score: 17.1
coord: 54..84
e-value: 42.0
score: 13.0
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 98..188
e-value: 9.4E-16
score: 57.6
coord: 10..83
e-value: 1.1E-5
score: 24.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 1..192
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 1..194
e-value: 9.7E-40
score: 138.4
NoneNo IPR availablePANTHERPTHR13068:SF31TRANSCRIPTION TERMINATION FACTOR MTERF15, MITOCHONDRIAL-LIKEcoord: 1..192

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G9616.T1Cucsat.G9616.T1mRNA
Cucsat.G9616.T3Cucsat.G9616.T3mRNA
Cucsat.G9616.T2Cucsat.G9616.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003690 double-stranded DNA binding