Cucsat.G9284 (gene) Cucumber (B10) v3

Overview
NameCucsat.G9284
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description16S rRNA (uracil(1498)-N(3))-methyltransferase
Locationctg1658: 530611 .. 534791 (-)
RNA-Seq ExpressionCucsat.G9284
SyntenyCucsat.G9284
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATTTTCATGGAAAGATAGGGAATAAAAAGGTAAATTTTAATTTGTTGTAATATTAGTGCAGCGAGTCTTGTAAGGCTTTCTCCACCAGCGGCAAATCCTCATGTTCCATAGTTGTTGTTCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGAACCCCTCATGTTTCAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAACCAGTCTCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTACCTTCTTATAAGGCAATCCCTCTTTTTGTTTTGTTTGTTTTTTTTTTTTTTCAATTACTAAGTTTTTATACGATTGAAAATTGTGTATGAGATGGGGTTGTGTTAGTTTTGGATGGGGCTGTCGATTTGAATGGATTGTTATTAATTTTTTCCTTTTTGGTTTAAGTGGAGTGTTGGTGACTCTGAATTTTGGAAGACAGAGTGTTGTCATTATGAGTGGGGTTTGATTTAATCCATTAAATGTTAGTTATGGAGCTTTGTGTTCTTGGGAAAACTTGGAATGCTTTCGATATTTTGTCGTGGGGAGTTGGTATCTATGAACTGAACCTATGAGATGGATAATGGCATTTACTATGATGAAATTGGATGGGATGGGATGGGATGGATGATTATTTTCCTAGTGGCATTTCTATTGATCTCTTCAAGTAAGTCTTAGGAATTTTTCATGTAATGATAGTAGAGGGAAGTTTAACTACATTGTGTAATGTCATGCTGTAGTAAGCTTAATGCTTTACTTGATTTGATAGTTTTGTAAAGTTAGATTGTGGAAATGGAACTGCTCTCATATCATATGCTTCATCATTATCCAGGGTGATGTTATTCGTCTAGAAGGTGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAAACTGATGATAGGTACTACTTCTAATAGTCAACAGCAAAACCGTTTGTTATTATCTAGACATATGGGTTACTGGGTGGATTCTTTTCTCTATTTATATGTTTGTTATCTTTATGATAATTGGATGTAAATTCAAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAATGGACTTGAGATTCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCATGCGGTAAGATTCTTATGAGGAATCATTAAACTGTTACTGCATCTTTTATTCTTTGGCATGGAAATTAACTGCCTTTGTTTAGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAAAAATGTACGGTGAGTAAATGTAGACTAAGGTGATGCAAAATAAAAAATTTTGCTTCCTAATTTTCTTGCTGCCTTTTCTCTTTATTTAGGAACTGGGTGCTAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTACAAAGATTTGAACGTATCGCATTGGCAGCAACTAAACAATGTGAGTCATTATTCAAGTTAAGTTTCTTTGCCTTTGGAGTGGGAATTTGAGACATTTCAATCTGGTTTGTTGCTTGACGTCTAATTACGTTTGGAAAATTTACGCAACCTTCATTGCAGGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCTTTGTGAGTTGCAATCCAACTTTTCCCTTGTGCTAATAAACAAAATCATAAAAGAATCACGATTCATGTACATTTGCGATATAGAATTAAGCATATTTCTTCAACAAATGGTCAAGTACTTCCTGTACTAGTGATTAGGTGAAATGGTTTCATTTTCCATGGTTTTCTTGAAATTTTCAACATTCTGAGATTCAAGGTTGTATATCCATCTTAAAAGTAATTCATTATAATGTCCACTTGATGTGGCCTTTTTCATAAACGATTATTCTATTCTTTTAGTAATTATGTTAATAAATGATAAGCAACTGAGACATATTGATACAGAGGAGAAAAGCAGCCTAGGAACCGGAATCCTGGCCTGAAGAAAATACAAAAGAATTGCATAGCATTTTATACTACAAATTCTTCTCTTTAACTTAATTTCATAATCGCTTTGGTTTTATTTTGTTCCCTGTAGATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACGCCGCTTGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGGTATATTTTATATTGTACTTCTGCTTTTTCAAGATGAGTGCAATTTTTCTACAATATTAATAAGTGGTTTTTAGTGTAGTTAGTGTTTCAACATTCTAATGAAGAGGCATATTAAAGTCTTACAAATTTCAGCATTCTGTGATCTGTCGTGAATAGCATTTTTTTAAAAAAACATTGTGATGGATTTAAATGTCCATCAGTATGTCAAAATTTTGGCTGTGGTGGATGTATTTGTCGTCAAACTAATCTACCCAAGAAATAGAGTAATAGCTCATATACTTCATACTTTTTACCAGGAAATAGGAATTTTATCGTGCATGGAAAATTACCTATCTTATCTATTGTTAATTGTCCACCTACGGAATAATAATCCGTGGAAAGCAGTGGTTAATGTAATGCAAACAATTGTTTGGGGTACCAGATCATTTTAATGTTGTTAGTGACATTAACTAGTACTTGAATGATATTTCCCCTTCATGCTGGAGAATATCAAGAAATCCTTTACTTCTCTTCATCCAGTGCCATGCCGTTCTTTTTTTCTTCATCTTTTCCCCTTTTTTTATTCTTCAGACTTCACTGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTCGCGATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCCAACTGTTAATCTTCCTTTCAGGTTAGCCGTCGACCATCATATATTTCTGTATTGATAAATCAGATTTTCCTGCAATCTTTATTTAGTTTATTTTACTTCGACATATATTTCTGTATTGATAAATCAGATTTTCCTGCAATCTTTATTTAGTTTATTTTACTTCGAGGAATGAACTAAAATTTAGAACGTGAAATATATTTTGAAGGTAATATTAAATACCATTATTTTAGGTACCTGACTCCTAGTCTACTATATGAGACTCAAACCCTTATCTACATAAATGTTTTAGGTAAATGCACACAAGATGTGTACCTATATCAAGTTTCTATTGAATCGTTTGTTAAAAAGTTAATATCAATAACAGTCCAAGTTTGAGGACTAGGATAAAACATTTCATAGTTTATGGACCTAAGACAGAAGAGGCAAGAAAATAAGACTGAATATATTTCATACAAATTTACCTTTCTTCTTATTGAATGGACAAAAGTACATTGCCATCATGTAGAGATCTTGAAAAAATACTTGTATCAGTTTATTGCTTCATTTCTTCTTGACCTAATAGATGCTACTCATTTTTTTCTAGTACTCTTTGCATATCAGAGCTACTCATGAAAGTTAACCCATCCAAAACCATGACATTCCCCACTAATTTACACTTGTTTTAATTCTATTTACTGATTTACTGCAATGATGAACATAGTGCGATATGTTGGAATAAATGGTATGCAACCCTACAGAGTTGCATCTTTTAAATTCCACAAGTTGCATTTTTCGTTAACCAGCTCGAAGAAGGTACATGCCGGTTCGACTTATTAAGAATTAGTTTACAAACACGTCTCTTCTTCAAATTGGATTTTTACTTTATCCATCCACTGTGTTCTATCCCAAAACTTTCCTCTCATCTAAAAGTTCGGTTTATTCCACAAAGTAGAGTTTCTTAAATCTTGTAAACGAGATGTTGCTTCTAGTATACGTTTCTCCTATATTACTCTTGAAGCTCCTTAAAATTTTCTAGGAAATAATGTAATTTGTCAAGCTCAAATTCTCACTTAGAAGAGCAAAACTAACAATGAAGGTAGTTTCTATCATTCTTTCTCAAGATGTGTATGATGAAAATATTCTTCATACAAAATTATTGCGCTGGTGTTTGCTAAATAGATCAACTGACAATGGTAGTTTCTATCATTAAATTTAAAAAAAGTTTCCACTTAGAAAACTAGAATCCATTCTAGTAACTTCTAACTTCTTACGTTCACTGATCACAGGGTAGCTTCAAAATCAGCACCACTGCAAAGCCTCAATAGCATGAGCATTTGAGTTTTGGGGTATAATCTATTTGAGGATTGGTCTGTGATGATGATGGGACTTCATGAGGAAGATTACAATTGTGTATGATGAGGAAGATTTCCTATACTAAATTTTCAGTGTCATCTCAATTTGCTTTTAAAAATATGGTAAGCCCATAGATATTAATGAAGACAAAATTTATAGTGTAAACATAAATAGTATTGATATCTTGGGAGTAGTAGAGAATTTTGCTTGCATTTATGGTAGTTGAATTGAAATGCATTTTTGTTTTAGCAAATTACATGGTTAAAATTTGATATGAATGCAATAGCCATTACTTCCCTTTGCCTTTTTTCAATGTATTAGGATCACTTTTTTGAACTTTGTGTTATTT

Coding sequence (CDS)

ATGTTCCATAGTTGTTGTTCTTCCCAAATGCGAACTATAGGAGCATTTCGACCTCAATTGACACAGTTATTGAACCCCTCATGTTTCAGAAGCTTCAAAGTTAGAGCTCTCTCCTCTTCATCTCTGCCCTCCTCGAACCAGTCTCGCGGTGGCCTTCCTCGCTTCTTCTCCCAAGTTCTACCTTCTTATAAGGGTGATGTTATTCGTCTAGAAGGTGATGAAGTCTGGCATATGACTAAAGTATTGAGGTTGAAAACTGATGATAGGGTGGAGCTGTTCAATGGAAATGGAGGTTTAGTTGAAGGGAGCATAAAGAACATTCGTGTCAATGGACTTGAGATTCTGGCTATGGAAGAACCAAAATCTGTTTTACCTCAAAGCACACAATGGCATGTATTTGCAGCATGCGGTACTCTAAAGGGCGGTCGTGCTGATTGGCTTGTTGAAAAATGTACGGAACTGGGTGCTAGCAGTGTAACTCCTCTGCTAACAGAACGTTGCCCTACCATATCTGATAACCGGGTACAAAGATTTGAACGTATCGCATTGGCAGCAACTAAACAATGTCAAAGACTGCACCAAATGAATCTGAATTCTCCCTTGAAAATTGATGGTCTTTTGCCCTTTATTAATGAAACGAAGCTATCTTTTGTAGCAGTTGCAGAAGCGACGCCGCTTGTAAGTGCATTAGCTTCAACAAAAATAGAGTCTGGTGGGCTTTTAGTTATCGGACCTGAAGGAGACTTCACTGAGAAAGAGGTGAACATGATGAAAGAAGCTGGAGCAATTGCAGTTGGTCTTGGCCCTTATCGACTTCGTGTTGAAACTGCAACAGTCGCGATCTTATCAACCCTCATGTTATGGTCTGACTCAAAAAGTTCCAACTGTTAA

Protein sequence

MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFERIALAATKQCQRLHQMNLNSPLKIDGLLPFINETKLSFVAVAEATPLVSALASTKIESGGLLVIGPEGDFTEKEVNMMKEAGAIAVGLGPYRLRVETATVAILSTLMLWSDSKSSNC
Homology
[Close]
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match: P0AGL8 (Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=rsmE PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 35/129 (27.13%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 74  IRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQS 133
           I L  D   H+ +VLR+     ++LF+G+  + +  I +     +E+  +E    +  + 
Sbjct: 18  IALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLE--GQIDDRE 77

Query: 134 TQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDN-----RVQRFERIA 193
           +  H+       +G + ++ ++K  ELG S +TPL +ERC    D+     ++Q++++IA
Sbjct: 78  SPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIA 137

Query: 194 LAATKQCQR 198
           +AA +QC R
Sbjct: 138 IAACEQCGR 144

[Close]
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match: P0AGL7 (Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli (strain K12) OX=83333 GN=rsmE PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 35/129 (27.13%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 74  IRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQS 133
           I L  D   H+ +VLR+     ++LF+G+  + +  I +     +E+  +E    +  + 
Sbjct: 18  IALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLE--GQIDDRE 77

Query: 134 TQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDN-----RVQRFERIA 193
           +  H+       +G + ++ ++K  ELG S +TPL +ERC    D+     ++Q++++IA
Sbjct: 78  SPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIA 137

Query: 194 LAATKQCQR 198
           +AA +QC R
Sbjct: 138 IAACEQCGR 144

[Close]
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match: P0AGL9 (Ribosomal RNA small subunit methyltransferase E OS=Shigella flexneri OX=623 GN=rsmE PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.4e-09
Identity = 35/129 (27.13%), Postives = 69/129 (53.49%), Query Frame = 0 

Query: 74  IRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQS 133
           I L  D   H+ +VLR+     ++LF+G+  + +  I +     +E+  +E    +  + 
Sbjct: 18  IALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKVLE--GQIDDRE 77

Query: 134 TQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDN-----RVQRFERIA 193
           +  H+       +G + ++ ++K  ELG S +TPL +ERC    D+     ++Q++++IA
Sbjct: 78  SPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKLQQWQKIA 137

Query: 194 LAATKQCQR 198
           +AA +QC R
Sbjct: 138 IAACEQCGR 144

[Close]
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match: P37995 (Ribosomal RNA small subunit methyltransferase E OS=Dickeya dadantii (strain 3937) OX=198628 GN=rsmE PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 40/150 (26.67%), Postives = 76/150 (50.67%), Query Frame = 0 

Query: 58  LPRFFSQVLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSI-----KN 117
           +PR F     + +G    L  D   H+ +VLR+     ++LF+G+  + +  I     KN
Sbjct: 3   IPRIFHPDTLTPQGGETDLSEDAANHVGRVLRMSAGQALQLFDGSNQVFDAEIVQAGKKN 62

Query: 118 IRVNGLEILAMEEPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTER 177
           +RV      A  + ++   + +  H+       +G + ++ ++K  ELG + +TPLL+ER
Sbjct: 63  VRVR----YAAGQTEN---RESPLHLHLGQVMSRGEKMEFTIQKSIELGVNVITPLLSER 122

Query: 178 CPTISD-----NRVQRFERIALAATKQCQR 198
           C    D      ++ ++++IA+AA +QC R
Sbjct: 123 CGVKLDGERLEKKIAQWQKIAIAACEQCGR 145

[Close]
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match: Q92J59 (Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) OX=272944 GN=rsmE PE=3 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.7e-08
Identity = 41/126 (32.54%), Postives = 61/126 (48.41%), Query Frame = 0 

Query: 74  IRLEGDEVWHMTK-VLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEPKSVLPQ 133
           I L  D   H  K VLRLK +D + LFNG  G     I +I  N L +   E+ K    +
Sbjct: 18  IELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNLSVRLKEQLKKPYTK 77

Query: 134 STQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFERIALAAT 193
           ST   +  A   +K  +    +   T+LG + + PL+T  C   S N ++R  +  + AT
Sbjct: 78  ST---LTLAVAIIKQDKLMLAINMATQLGITKIIPLITRWCQFRSVN-IERLTKCVIEAT 137

Query: 194 KQCQRL 199
           +Q +RL
Sbjct: 138 EQSERL 139

[Close]
BLAST of Cucsat.G9284 vs. NCBI nr
Match: XP_004136932.2 (uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709.1 uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >KGN43899.2 hypothetical protein Csa_017251 [Cucumis sativus])

HSP 1 Score: 425 bits (1092), Expect = 1.73e-148
Identity = 209/214 (97.66%), Postives = 212/214 (99.07%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
           PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP
Sbjct: 61  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           IALAATKQCQRLHQMNLNSPLKIDGLLPF+ + +
Sbjct: 181 IALAATKQCQRLHQMNLNSPLKIDGLLPFINETK 214

[Close]
BLAST of Cucsat.G9284 vs. NCBI nr
Match: XP_008455052.1 (PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo])

HSP 1 Score: 402 bits (1033), Expect = 1.67e-139
Identity = 198/214 (92.52%), Postives = 205/214 (95.79%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSCC SQMRTIGAFRPQLTQLL PS  RSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
           PS+KGDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGL+ILAMEEP
Sbjct: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV RFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           I LAATKQCQRLHQMNLNSPLKIDGLLP + + +
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETK 214

[Close]
BLAST of Cucsat.G9284 vs. NCBI nr
Match: KAG6571912.1 (hypothetical protein SDJN03_28640, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 394 bits (1012), Expect = 4.46e-136
Identity = 194/216 (89.81%), Postives = 203/216 (93.98%), Query Frame = 0 

Query: 5   ILMFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQ 64
           ILMFHSCCS QMRTIG  RPQLT+L N SCFRSF+VRALSSSSL SSNQSRGGLPRFFSQ
Sbjct: 16  ILMFHSCCSLQMRTIGEIRPQLTELFNRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ 75

Query: 65  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAME 124
           VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN+RVNGL+ILAME
Sbjct: 76  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNVRVNGLDILAME 135

Query: 125 EPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRF 184
           +PKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRV RF
Sbjct: 136 DPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRF 195

Query: 185 ERIALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           ERI LAATKQCQRLHQM+LNSPLKIDGLL  + + +
Sbjct: 196 ERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESK 231

[Close]
BLAST of Cucsat.G9284 vs. NCBI nr
Match: XP_038877549.1 (ribosomal RNA small subunit methyltransferase E isoform X2 [Benincasa hispida])

HSP 1 Score: 388 bits (996), Expect = 1.82e-134
Identity = 192/214 (89.72%), Postives = 202/214 (94.39%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSC SSQMR IGAFRP+LT+LLN   FRSF+VRALSSSSL SSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCSSSQMRAIGAFRPRLTELLNRLSFRSFRVRALSSSSLASSNQSRGGLPRFFSQVL 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
           PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGL+ILAME+P
Sbjct: 61  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLDILAMEDP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASS+TPLLTERCPTISDNRV RFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSLTPLLTERCPTISDNRVHRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           I LAATKQCQRLHQM+LNSPLKIDGLL  + + +
Sbjct: 181 ITLAATKQCQRLHQMDLNSPLKIDGLLHLINETK 214

[Close]
BLAST of Cucsat.G9284 vs. NCBI nr
Match: XP_022972429.1 (uncharacterized protein LOC111470992 [Cucurbita maxima])

HSP 1 Score: 389 bits (1000), Expect = 3.21e-134
Identity = 192/216 (88.89%), Postives = 203/216 (93.98%), Query Frame = 0 

Query: 5   ILMFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQ 64
           ILMFHSC S QMRTIGA RPQLT+L + SCFRSF+VRALSSSSL SSNQSRGGLPRFFSQ
Sbjct: 16  ILMFHSCSSLQMRTIGAIRPQLTELFDRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ 75

Query: 65  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAME 124
           VLPSYKGD+IRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNG++ILAME
Sbjct: 76  VLPSYKGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGIDILAME 135

Query: 125 EPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRF 184
           +PKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRV RF
Sbjct: 136 DPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRF 195

Query: 185 ERIALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           ERI LAATKQCQRLHQM+LNSPLKIDGLL  + + +
Sbjct: 196 ERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESK 231

[Close]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match: A0A0A0K4E1 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa_7G070790 PE=3 SV=1)

HSP 1 Score: 431 bits (1109), Expect = 1.26e-152
Identity = 216/217 (99.54%), Postives = 216/217 (99.54%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
           PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP
Sbjct: 61  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPF-LQKRRRL 222
           IALAATKQCQRLHQMNLNSPLKIDGLLPF LQKRRRL
Sbjct: 181 IALAATKQCQRLHQMNLNSPLKIDGLLPFQLQKRRRL 217

[Close]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match: A0A1S3BZZ7 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103495322 PE=3 SV=1)

HSP 1 Score: 402 bits (1033), Expect = 8.10e-140
Identity = 198/214 (92.52%), Postives = 205/214 (95.79%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSCC SQMRTIGAFRPQLTQLL PS  RSFKVRALSSSSLPSSNQSRGGLPRFFSQVL
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
           PS+KGDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGL+ILAMEEP
Sbjct: 61  PSHKGDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV RFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           I LAATKQCQRLHQMNLNSPLKIDGLLP + + +
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETK 214

[Close]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match: A0A6J1IBI6 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LOC111470992 PE=3 SV=1)

HSP 1 Score: 389 bits (1000), Expect = 1.55e-134
Identity = 192/216 (88.89%), Postives = 203/216 (93.98%), Query Frame = 0 

Query: 5   ILMFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQ 64
           ILMFHSC S QMRTIGA RPQLT+L + SCFRSF+VRALSSSSL SSNQSRGGLPRFFSQ
Sbjct: 16  ILMFHSCSSLQMRTIGAIRPQLTELFDRSCFRSFRVRALSSSSLASSNQSRGGLPRFFSQ 75

Query: 65  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAME 124
           VLPSYKGD+IRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNG++ILAME
Sbjct: 76  VLPSYKGDIIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGIDILAME 135

Query: 125 EPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRF 184
           +PKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRV RF
Sbjct: 136 DPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRF 195

Query: 185 ERIALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           ERI LAATKQCQRLHQM+LNSPLKIDGLL  + + +
Sbjct: 196 ERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESK 231

[Close]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match: A0A6J1GL34 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita moschata OX=3662 GN=LOC111454941 PE=3 SV=1)

HSP 1 Score: 387 bits (993), Expect = 1.80e-133
Identity = 193/216 (89.35%), Postives = 201/216 (93.06%), Query Frame = 0 

Query: 5   ILMFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQ 64
           ILMFHS  S QMRTIGA RPQLT+L N SCFRSF VRALSSSSL SSNQSRGGLPRFFSQ
Sbjct: 16  ILMFHSSSSLQMRTIGAIRPQLTELFNRSCFRSFGVRALSSSSLASSNQSRGGLPRFFSQ 75

Query: 65  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAME 124
           VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKN+RVNGL+ILAME
Sbjct: 76  VLPSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNVRVNGLDILAME 135

Query: 125 EPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRF 184
           +PKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERC TISDNRV RF
Sbjct: 136 DPKSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCATISDNRVHRF 195

Query: 185 ERIALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           ERI LAATKQCQRLHQM+LNSPLKIDGLL  + + +
Sbjct: 196 ERITLAATKQCQRLHQMSLNSPLKIDGLLHIINESK 231

[Close]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match: A0A5A7SPG3 (16S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001330 PE=3 SV=1)

HSP 1 Score: 385 bits (990), Expect = 2.31e-133
Identity = 193/214 (90.19%), Postives = 199/214 (92.99%), Query Frame = 0 

Query: 7   MFHSCCSSQMRTIGAFRPQLTQLLNPSCFRSFKVRALSSSSLPSSNQSRGGLPRFFSQVL 66
           MFHSCC SQMRTIGAFRPQLTQLL PS  RSFKVRALSSSSLPSSNQSRGGLPRFFSQ  
Sbjct: 1   MFHSCCPSQMRTIGAFRPQLTQLLIPSSLRSFKVRALSSSSLPSSNQSRGGLPRFFSQ-- 60

Query: 67  PSYKGDVIRLEGDEVWHMTKVLRLKTDDRVELFNGNGGLVEGSIKNIRVNGLEILAMEEP 126
               GDVIRLEGDEVWHMTKVLRLKT+DRVELFNGNGGLVEGSIKN+RVNGL+ILAMEEP
Sbjct: 61  ----GDVIRLEGDEVWHMTKVLRLKTNDRVELFNGNGGLVEGSIKNVRVNGLDILAMEEP 120

Query: 127 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVQRFER 186
           KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRV RFER
Sbjct: 121 KSVLPQSTQWHVFAACGTLKGGRADWLVEKCTELGASSVTPLLTERCPTISDNRVHRFER 180

Query: 187 IALAATKQCQRLHQMNLNSPLKIDGLLPFLQKRR 220
           I LAATKQCQRLHQMNLNSPLKIDGLLP + + +
Sbjct: 181 ITLAATKQCQRLHQMNLNSPLKIDGLLPLINETK 208

The following BLAST results are available for this feature:
BLAST of Cucsat.G9284 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P0AGL84.4e-0927.13Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli O6:H1 (strai... [more]
P0AGL74.4e-0927.13Ribosomal RNA small subunit methyltransferase E OS=Escherichia coli (strain K12)... [more]
P0AGL94.4e-0927.13Ribosomal RNA small subunit methyltransferase E OS=Shigella flexneri OX=623 GN=r... [more]
P379955.7e-0926.67Ribosomal RNA small subunit methyltransferase E OS=Dickeya dadantii (strain 3937... [more]
Q92J591.7e-0832.54Ribosomal RNA small subunit methyltransferase E OS=Rickettsia conorii (strain AT... [more]
BLAST of Cucsat.G9284 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004136932.21.73e-14897.66uncharacterized protein LOC101213733 isoform X1 [Cucumis sativus] >XP_031744709.... [more]
XP_008455052.11.67e-13992.52PREDICTED: ribosomal RNA small subunit methyltransferase E [Cucumis melo][more]
KAG6571912.14.46e-13689.81hypothetical protein SDJN03_28640, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038877549.11.82e-13489.72ribosomal RNA small subunit methyltransferase E isoform X2 [Benincasa hispida][more]
XP_022972429.13.21e-13488.89uncharacterized protein LOC111470992 [Cucurbita maxima][more]
BLAST of Cucsat.G9284 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4E11.26e-15299.5416S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis sativus OX=3659 GN=Csa... [more]
A0A1S3BZZ78.10e-14092.5216S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo OX=3656 GN=LOC103... [more]
A0A6J1IBI61.55e-13488.8916S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1GL341.80e-13389.3516S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucurbita moschata OX=3662 GN=... [more]
A0A5A7SPG32.31e-13390.1916S rRNA (uracil(1498)-N(3))-methyltransferase OS=Cucumis melo var. makuwa OX=11... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006700Ribosomal RNA small subunit methyltransferase EPFAMPF04452Methyltrans_RNAcoord: 28..173
e-value: 1.7E-37
score: 128.9
IPR006700Ribosomal RNA small subunit methyltransferase ETIGRFAMTIGR00046TIGR00046coord: 28..173
e-value: 1.6E-30
score: 104.1
IPR006700Ribosomal RNA small subunit methyltransferase EPANTHERPTHR30027RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Ecoord: 28..179
IPR029026tRNA (guanine-N1-)-methyltransferase, N-terminalGENE3D3.40.1280.10coord: 23..182
e-value: 1.0E-43
score: 151.1
NoneNo IPR availableCDDcd18084RsmE-likecoord: 28..170
e-value: 3.30113E-47
score: 149.619
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 28..176

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G9284.T1Cucsat.G9284.T1mRNA
Cucsat.G9284.T3Cucsat.G9284.T3mRNA
Cucsat.G9284.T6Cucsat.G9284.T6mRNA
Cucsat.G9284.T10Cucsat.G9284.T10mRNA
Cucsat.G9284.T9Cucsat.G9284.T9mRNA
Cucsat.G9284.T2Cucsat.G9284.T2mRNA
Cucsat.G9284.T4Cucsat.G9284.T4mRNA
Cucsat.G9284.T5Cucsat.G9284.T5mRNA
Cucsat.G9284.T8Cucsat.G9284.T8mRNA
Cucsat.G9284.T11Cucsat.G9284.T11mRNA
Cucsat.G9284.T12Cucsat.G9284.T12mRNA
Cucsat.G9284.T13Cucsat.G9284.T13mRNA
Cucsat.G9284.T18Cucsat.G9284.T18mRNA
Cucsat.G9284.T14Cucsat.G9284.T14mRNA
Cucsat.G9284.T15Cucsat.G9284.T15mRNA
Cucsat.G9284.T16Cucsat.G9284.T16mRNA
Cucsat.G9284.T17Cucsat.G9284.T17mRNA
Cucsat.G9284.T7Cucsat.G9284.T7mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032259 methylation
biological_process GO:0070475 rRNA base methylation
biological_process GO:0006364 rRNA processing
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0070042 rRNA (uridine-N3-)-methyltransferase activity