Cucsat.G9268 (gene) Cucumber (B10) v3

Overview
NameCucsat.G9268
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptiontranscription factor bHLH113
Locationctg1658: 272113 .. 274051 (-)
RNA-Seq ExpressionCucsat.G9268
SyntenyCucsat.G9268
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATAAAGTGAAGTAAGGAGGAGGCACTCGCATTTCCGAAGCAGAGTACGGTGACAATGGCGCAATGGCAATGGCAATGGCTATGGTATCTGCTTCTGCTTCTGCTTCTGCTTTGGACATCGAAACCCACGGGCTTCTCGGGTCCGAAACATTTGACCAAAGAAAGCTCCGAAAACCCAGAAAAATCCAAAACCAAAGCCTCGGAACTCTCCAACGAAAAAAGAAAAAAGGAAAAAGAAATTGATTTCCTCTTCCTCCACCACTCATTCCATTGTAACCGAAAACCACAGTAATCCCCTGCTTCTCACTCGCACATAAAACAAAGAGAAAGAGAGAGAGAGAGAGGCACTAAAAAAGAAACAAAAAGCTTCCGTTTTTTTCTCCCACTGATCTTCTTCACTCTGTTTTCTTTTCAAGCAAAAACCTTCTCATTAATGGCGGAAAATCAATCCTTTACTGGGGACCACCTCCGACCAACAACAGCTACTACTTTCTCTCAGCTTCTGTTTTCCCCACACCATGATGATGATGATGATAATGATGTTGATGTTGATGTTGATCAAAATCATCATCAAATCTTTGATTACTCTGTTTCTTCTTCTTCTTCCTCTTCTTTCGCCATTGATAACCCACCCAAGATGCTCTGTTTCGGTACCAAAGAAGAAGACCAAGAACATCCACAGCTGGGTTTTAAGTCTCGTCAAAGATCAGCCCACGCATGCAGTGATTCCTCTTCAAATTCTTCTGGGAATGGCCTCAAATTTGAATTCGTAAATACAAAAATTGAATCTTTTTAACTCATTTCCTCTGTATTTCTTGTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTACATATATATTGTGAGTTGAACTGTTGGTGTTTGTAGAAATTGAAAAGGAGAAATGGATCAAACCCAGAAATGGCAGCCATTAAAGAAGCTTCGAAAAAGACCAAACCTGAAGCTCCTTGTTCTGCTGGACATGCAAAGGTTTATTTTTGCCACAACTTTCATCATCATCATCATCTTCTTCTTCTTTACTCTGTTTCTGAAATGGGTTTTGTTTTGTTTGTTTCTTTAGAGGAAGGAGAAATTAGGGGAAAGAATCACAGCATTACAGCAATTGGTTTCACCCTTTGGAAAGGTCGTAAAAATAACAGAACATCTAATTTTGATTCTTCCAATTATTTTGAGAATTTGATATGAATTTTGTTGGATGTTAATGAATTAAAAAAAAAAAAAAAAGAACAGACAGATACAGCATCAGTACTTCATGAAGCAATGGGTTACATCAAATTTCTACATGAACAGGTTCAAGTCTTGTGCAGCCCTTACTTGCAAAAAAGTCAGCTGCTTTCTTCTCAGTCAGCCACTGTAAGAACTTTCTGACTAAAAGAGACGAACCTTTATTATTATTATTATTATTATTTATTAAAAAAGAACCCTTTTGTTTTCTTTAAAAGGGAAGAGGAAATGAGGAAACAGAGGGAGATCTGAAAAGTAGAGGATTGTGTTTGATTCCAGTGGATTGTAGTTTGCATTTGGCTAATTGTACAGTAGCAGATTTTTGGTCTCCAGCCATGGCTATGGGAAAGAAGTTTTGAGAAGAAGAAGAGAGGAAATGGATGGTTGGATTTTGAAGTTTGATGTGTACAAAGAACTGAAGAAGAGGGTTTGGGTTTTTTGTTGTTTTGGGGTACTGTCTCTTTTTTGACTTACAACTTTTGACTAAAATGAATCAGTAACTATAGCAGAAGATGTGTGAAGAAGATGTAAATCAAACACTTCCTTCTTTTTGTTTGTTTGATGGGAAAGAAATAGATGTGAAAAGCTGTTAGCTTTCTTTTGTTTTTTGTTTGTGCTTTTTCCTGCTTTTAGGGGCTTCAGTTGTTAAAACTTGTTATTTGGATGATTGGTTAAGTGACACTTCTGCCTTTTGGGCTTTGTTTATTTGAGAAGAATAGGGGTGTTTTTG

Coding sequence (CDS)

ATGGCAGCCATTAAAGAAGCTTCGAAAAAGACCAAACCTGAAGCTCCTTGTTCTGCTGGACATGCAAAGAGGAAGGAGAAATTAGGGGAAAGAATCACAGCATTACAGCAATTGGTTTCACCCTTTGGAAAGACAGATACAGCATCAGTACTTCATGAAGCAATGGGTTACATCAAATTTCTACATGAACAGGTTCAAGTCTTGTGCAGCCCTTACTTGCAAAAAAGTCAGCTGCTTTCTTCTCAGTCAGCCACTGGAAGAGGAAATGAGGAAACAGAGGGAGATCTGAAAAGTAGAGGATTGTGTTTGATTCCAGTGGATTGTAGTTTGCATTTGGCTAATTGTACAGTAGCAGATTTTTGGTCTCCAGCCATGGCTATGGGAAAGAAGTTTTGA

Protein sequence

MAAIKEASKKTKPEAPCSAGHAKRKEKLGERITALQQLVSPFGKTDTASVLHEAMGYIKFLHEQVQVLCSPYLQKSQLLSSQSATGRGNEETEGDLKSRGLCLIPVDCSLHLANCTVADFWSPAMAMGKKF
Homology
[Close]
BLAST of Cucsat.G9268 vs. NCBI nr
Match: XP_004137092.1 (transcription factor bHLH113 [Cucumis sativus] >KGN43876.1 hypothetical protein Csa_017145 [Cucumis sativus])

HSP 1 Score: 229 bits (583), Expect = 1.85e-73
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60
           MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60

Query: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112
           FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112

[Close]
BLAST of Cucsat.G9268 vs. NCBI nr
Match: XP_008455002.1 (PREDICTED: transcription factor bHLH113 [Cucumis melo])

HSP 1 Score: 211 bits (536), Expect = 2.30e-66
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60
           MAENQSF GDHLRPTTATTFSQLLFSPHHDDDDDNDVDV  D+NHHQIFDYSVSSSSSS 
Sbjct: 1   MAENQSFAGDHLRPTTATTFSQLLFSPHHDDDDDNDVDV--DKNHHQIFDYSVSSSSSS- 60

Query: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112
           FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 109

[Close]
BLAST of Cucsat.G9268 vs. NCBI nr
Match: XP_038888642.1 (transcription factor bHLH113-like [Benincasa hispida])

HSP 1 Score: 175 bits (443), Expect = 3.96e-52
Identity = 90/112 (80.36%), Postives = 102/112 (91.07%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNH---HQIFDYSVSSSS 60
           MA+NQSF+GDHL PTTATTFSQLLFS  HDD+ D D+DVDVD++H   HQIFDYSVSS+S
Sbjct: 1   MADNQSFSGDHLGPTTATTFSQLLFSSQHDDETD-DIDVDVDKSHPLHHQIFDYSVSSAS 60

Query: 61  SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLK 109
           +S FAIDNPPKMLCFG+KEED++HPQLGFKSRQRS+HACSDSSS SSGNGLK
Sbjct: 61  AS-FAIDNPPKMLCFGSKEEDEDHPQLGFKSRQRSSHACSDSSSTSSGNGLK 110

[Close]
BLAST of Cucsat.G9268 vs. NCBI nr
Match: XP_022952658.1 (transcription factor bHLH113 isoform X2 [Cucurbita moschata])

HSP 1 Score: 111 bits (278), Expect = 1.18e-27
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 1  MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHH---QIFDYSVSSSS 60
          MAENQS +G   +   ATTFSQLLFS +HD+DDD    +DVD++HH   QIF+YSVSSS 
Sbjct: 1  MAENQS-SGRDPKTAAATTFSQLLFSANHDEDDD----IDVDKHHHVHHQIFEYSVSSS- 60

Query: 61 SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDS 99
             FAI+NPPKMLCFGTK+E QEHPQLG     RSAHACSDS
Sbjct: 61 ---FAIENPPKMLCFGTKQE-QEHPQLGL----RSAHACSDS 88

[Close]
BLAST of Cucsat.G9268 vs. NCBI nr
Match: XP_022952657.1 (transcription factor bHLH113 isoform X1 [Cucurbita moschata])

HSP 1 Score: 111 bits (278), Expect = 2.28e-27
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 1  MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHH---QIFDYSVSSSS 60
          MAENQS +G   +   ATTFSQLLFS +HD+DDD    +DVD++HH   QIF+YSVSSS 
Sbjct: 1  MAENQS-SGRDPKTAAATTFSQLLFSANHDEDDD----IDVDKHHHVHHQIFEYSVSSS- 60

Query: 61 SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDS 99
             FAI+NPPKMLCFGTK+E QEHPQLG     RSAHACSDS
Sbjct: 61 ---FAIENPPKMLCFGTKQE-QEHPQLGL----RSAHACSDS 88

[Close]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match: A0A0A0K7T3 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071650 PE=4 SV=1)

HSP 1 Score: 229 bits (583), Expect = 8.94e-74
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60
           MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS
Sbjct: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60

Query: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112
           FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112

[Close]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match: A0A1S3BZZ3 (transcription factor bHLH113 OS=Cucumis melo OX=3656 GN=LOC103495283 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 1.12e-66
Identity = 107/112 (95.54%), Postives = 108/112 (96.43%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHHQIFDYSVSSSSSSS 60
           MAENQSF GDHLRPTTATTFSQLLFSPHHDDDDDNDVDV  D+NHHQIFDYSVSSSSSS 
Sbjct: 1   MAENQSFAGDHLRPTTATTFSQLLFSPHHDDDDDNDVDV--DKNHHQIFDYSVSSSSSS- 60

Query: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 112
           FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF
Sbjct: 61  FAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDSSSNSSGNGLKFEF 109

[Close]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match: A0A6J1GL82 (transcription factor bHLH113 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111455286 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 5.69e-28
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 1  MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHH---QIFDYSVSSSS 60
          MAENQS +G   +   ATTFSQLLFS +HD+DDD    +DVD++HH   QIF+YSVSSS 
Sbjct: 1  MAENQS-SGRDPKTAAATTFSQLLFSANHDEDDD----IDVDKHHHVHHQIFEYSVSSS- 60

Query: 61 SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDS 99
             FAI+NPPKMLCFGTK+E QEHPQLG     RSAHACSDS
Sbjct: 61 ---FAIENPPKMLCFGTKQE-QEHPQLGL----RSAHACSDS 88

[Close]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match: A0A6J1GKZ3 (transcription factor bHLH113 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111455286 PE=4 SV=1)

HSP 1 Score: 111 bits (278), Expect = 1.10e-27
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 0 

Query: 1  MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHH---QIFDYSVSSSS 60
          MAENQS +G   +   ATTFSQLLFS +HD+DDD    +DVD++HH   QIF+YSVSSS 
Sbjct: 1  MAENQS-SGRDPKTAAATTFSQLLFSANHDEDDD----IDVDKHHHVHHQIFEYSVSSS- 60

Query: 61 SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDS 99
             FAI+NPPKMLCFGTK+E QEHPQLG     RSAHACSDS
Sbjct: 61 ---FAIENPPKMLCFGTKQE-QEHPQLGL----RSAHACSDS 88

[Close]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match: A0A6J1IBJ7 (transcription factor bHLH113 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470999 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 8.13e-25
Identity = 65/102 (63.73%), Postives = 75/102 (73.53%), Query Frame = 0 

Query: 1   MAENQSFTGDHLRPTTATTFSQLLFSPHHDDDDDNDVDVDVDQNHH---QIFDYSVSSSS 60
           MAENQS +G   +   ATTFSQLLFS  HD+ D+    +DVD++HH   QIF+YSVSSS 
Sbjct: 112 MAENQS-SGRDPKTAAATTFSQLLFSADHDEYDE----IDVDKHHHVHHQIFEYSVSSS- 171

Query: 61  SSSFAIDNPPKMLCFGTKEEDQEHPQLGFKSRQRSAHACSDS 99
              FAI+NPPKMLCFGTK+E QEHPQLG     RSAHACSDS
Sbjct: 172 ---FAIENPPKMLCFGTKQE-QEHPQLGL----RSAHACSDS 199

The following BLAST results are available for this feature:
BLAST of Cucsat.G9268 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G9268 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004137092.11.85e-73100.00transcription factor bHLH113 [Cucumis sativus] >KGN43876.1 hypothetical protein ... [more]
XP_008455002.12.30e-6695.54PREDICTED: transcription factor bHLH113 [Cucumis melo][more]
XP_038888642.13.96e-5280.36transcription factor bHLH113-like [Benincasa hispida][more]
XP_022952658.11.18e-2765.69transcription factor bHLH113 isoform X2 [Cucurbita moschata][more]
XP_022952657.12.28e-2765.69transcription factor bHLH113 isoform X1 [Cucurbita moschata][more]
BLAST of Cucsat.G9268 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7T38.94e-74100.00BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071650 PE=4 S... [more]
A0A1S3BZZ31.12e-6695.54transcription factor bHLH113 OS=Cucumis melo OX=3656 GN=LOC103495283 PE=4 SV=1[more]
A0A6J1GL825.69e-2865.69transcription factor bHLH113 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1GKZ31.10e-2765.69transcription factor bHLH113 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC1114... [more]
A0A6J1IBJ78.13e-2563.73transcription factor bHLH113 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111470... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..108
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G9268.T2Cucsat.G9268.T2mRNA
Cucsat.G9268.T1Cucsat.G9268.T1mRNA
Cucsat.G9268.T7Cucsat.G9268.T7mRNA
Cucsat.G9268.T4Cucsat.G9268.T4mRNA
Cucsat.G9268.T8Cucsat.G9268.T8mRNA
Cucsat.G9268.T6Cucsat.G9268.T6mRNA
Cucsat.G9268.T3Cucsat.G9268.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription by RNA polymerase II
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding