Cucsat.G919 (gene) Cucumber (B10) v3

Overview
NameCucsat.G919
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Locationctg1: 4295317 .. 4297879 (+)
RNA-Seq ExpressionCucsat.G919
SyntenyCucsat.G919
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTAACACAAACAAGAGTAGGGAGGCATCTCAATCTCCTTTTGTCCAGGGTTGAACAATCTTAACTCCCCCTATTACCTATGAAGGTGTGAGCTTTGTTAATCTGAATTATTCATGTCTCTCATTTAATAGCTTCATTCCTCATCTCTTCATCCATACTTCATTATACGTTCCTTTATCTTAAAAAAGCCTAAAAGGAAAAAACAAACTAATCAAAACTATAACCTTTAGAATTTTATAACCATGTTCTAGATCTTTAAAGTTAGAGGTTGATTCTGAAGGTTTATTTTTTTCTTCTCCACCCGTTCGATTCCATCTTTCATGACTGTCAAAATTCATCCAACGTCCAAGATCTCTTCTGCAAAGAGTTACCCACAATCCTCACATACTCATTGGCCCACCGGATACCGAGTGGATGGATAGAACCTCCAAGATTGCGAGAGCAAAAGCTCACCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTTCCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCTTTCAAATTGGGTTCCCATTTTCTTGGCCTTCAGTCCAACCTTCGATGGCTCTCACCCGTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGGTTCTTTTACTAAGTACTCTCTTCTTTCTCTGTGTTTTGTTTTGTGGGTTTCTTGTTTTTGTCTTTGGGAACTTTGATTGTTGAAGAGTGGTGTCTTTTCTTTCATTGCTGGTTTGGGCTGATTCTTATGAGTTTGGAAGTTGAAATTGTTCTTACCCTCTGGCTGTTTTCTTTTCTTTTAAGTATTGTCAATTTTTAATCGCTCCTTGGTTAAGATAGATGAAGAAATTTAAATTAGTAATTTTTTTGTACCCATGATTCTCTTCCAGTGGTGTTAATGTTAAACTAACCTTTTCTTTACGTCATAAAGCACTTAATCGCTTGGAACTCAGTAGACGCCCTAACCCAATGCCATGGAAATCGAAATTTATATCGTATCCCTATTGTGATTTTAAACATCGCGATAGGTGAGACATTCCTAACGTGATACTGACTTGTAGATGGTTAAGTGCTCTCACATTTCACATTAACGCCTCATCCGCAATGGTTAGTCAAAATAAGAAGGGAGTTTGTGTTATGAGATTGTGAGAAAGGGACCTCCTTAAACATAATAACTAACCTCATAACTTGTGCATTTGTTACAAACTCTGCTTTCACATAAAGAAGCTAAAACAAGGTATCACATTGCCATTATGGAAAGTGCACAGAACTTCCTGCTTCCCTCAAACAAACTTGCAAATATTACTGATTTGGCTTAGCCTTTGGGTAAGGGAAAGTATTCCTTCATCCTTCTACTCTGAAAATGTGCTAAATGACGTTGTCCATAGTTTAAAAACTTGAACAAATCGCATTTTTCTTACAGTCTCTCATCCCTTTTTAAGCACTTGGATAGATTCCTAGTTCCTAATATGTAACAAGAAGAGTGATATTCTGAATGAACAATGAAAACCCACAGCATAGTGACTTGAGAGTTAAGATTACTCCCAATCCCACTGTATCAAACTTTTCAAATAGAGGAATCATGACGAGATGAATAATAATATCCCAACATGATGCTATCCCATTAGATATTGAAGTCTACTTTTGGTGTTCTTAATCCAATAATTCATTATGAAATTCTTATATAATTTCTTAATAAGTATCTTAGAATTAATGTTACAACTTATCACTTATTCTATATGATAGAATCTTAACATAAGTATTCATATTAAAAGCAAGATTATGTCGATACTTCTTGAATCATACCAAAAACTCGGAACCATGACATTAACATCATTCGCGGAAACAAGTTGTGAAGGAAAAAGGACTGACAAATGAACGTTATGGTTGTGCAGTATTTTAACTATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCTGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAGTTATGATGTGAAAGATGTTGATGGTCGAACTGCCGTTGATAGAGCAGTTAACGAAGAAATTAAGGATTTTATTCTCAATTTTTCTGCTAAAAAGGCATGATTTTGGTTGGAAGTTGCTCTGTTTTGATAGGTTTTAGAAAGAGGCTTAAGATTTGTATTTTCACTGCCTTCTGATGTTGATCATATCGTGTTAAAAATTTATGCTTGTTTTTATCAATTAGGGAATGGCTTTGAGATGTAAAATCTTGTTTATAGTTGTTTACTGTTTTGATGTTTACGTTATCTTTAAAATTGTGTATTTAATCTTCTGAAAGTGATGGAAATTGAATTATTAAGGCTGTTTTGCAACTTTTTGTTTCTTGGTTTTTAAAAGTTAGGCTTTCATTTTTTCTCCATTTTTGCCAA

Coding sequence (CDS)

ATGGCTTCCCTCTCTTGTACTTCCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCTTTCAAATTGGGTTCCCATTTTCTTGGCCTTCAGTCCAACCTTCGATGGCTCTCACCCGTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCTGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAGTTATGATGTGAAAGATGTTGATGGTCGAACTGCCGTTGATAGAGCAGTTAACGAAGAAATTAAGGATTTTATTCTCAATTTTTCTGCTAAAAAGGCATGA

Protein sequence

MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA
Homology
[Close]
BLAST of Cucsat.G919 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.8e-55
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 0 

Query: 3   SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTA+DRA +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

[Close]
BLAST of Cucsat.G919 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 106/175 (60.57%), Postives = 124/175 (70.86%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATC 60
           MAS+ CT  ++    S ++    +         + L WL P      V    S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]
BLAST of Cucsat.G919 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.1e-47
Identity = 106/175 (60.57%), Postives = 124/175 (70.86%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATC 60
           MAS+ CT  ++    S ++    +         + L WL P      V    S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPR---AAARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRAA-DDTREFILGFAATLA 171

[Close]
BLAST of Cucsat.G919 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 337 bits (864), Expect = 1.15e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]
BLAST of Cucsat.G919 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 328 bits (842), Expect = 2.61e-113
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Cucsat.G919 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 317 bits (813), Expect = 6.89e-109
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCT+S+NLTPRSFNSRPPFKL S FLGLQSNLRW+SPV+IGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILN S K A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

[Close]
BLAST of Cucsat.G919 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 306 bits (783), Expect = 2.68e-104
Identity = 152/168 (90.48%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P SFNSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Cucsat.G919 vs. NCBI nr
Match: XP_022932181.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata])

HSP 1 Score: 303 bits (777), Expect = 2.20e-103
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 337 bits (864), Expect = 5.57e-117
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

[Close]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.26e-113
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 328 bits (842), Expect = 1.26e-113
Identity = 162/168 (96.43%), Postives = 166/168 (98.81%), Query Frame = 0 

Query: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60
           MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168
           EGDKPKLEELLRAGASYDVKDVDGRTA+DRA+NEEIKDFIL FSAKKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

[Close]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 306 bits (783), Expect = 1.30e-104
Identity = 152/168 (90.48%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P SFNSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match: A0A6J1EVN2 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 PE=4 SV=1)

HSP 1 Score: 303 bits (777), Expect = 1.07e-103
Identity = 151/168 (89.88%), Postives = 159/168 (94.64%), Query Frame = 0 

Query: 1   MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLR 60
           MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLR
Sbjct: 1   MASVSCTSTSINLSPTSLNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

[Close]
BLAST of Cucsat.G919 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.9e-56
Identity = 110/169 (65.09%), Postives = 129/169 (76.33%), Query Frame = 0 

Query: 3   SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN- 62
           S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTA+DRA +EEI+D IL +S +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:
BLAST of Cucsat.G919 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VY886.8e-5565.09Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV... [more]
A2YLX73.1e-4760.57Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ... [more]
A3BKF23.1e-4760.57Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT... [more]
BLAST of Cucsat.G919 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152919.11.15e-116100.00protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro... [more]
XP_008463435.12.61e-11396.43PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei... [more]
XP_038903413.16.89e-10992.86protein LHCP TRANSLOCATION DEFECT [Benincasa hispida][more]
XP_022985270.12.68e-10490.48protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima][more]
XP_022932181.12.20e-10389.88protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata][more]
BLAST of Cucsat.G919 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3095.57e-117100.00ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078... [more]
A0A5D3BT071.26e-11396.43Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3CJ751.26e-11396.43protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S... [more]
A0A6J1JAV91.30e-10490.48protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE... [more]
A0A6J1EVN21.07e-10389.88protein LHCP TRANSLOCATION DEFECT OS=Cucurbita moschata OX=3662 GN=LOC111438495 ... [more]
BLAST of Cucsat.G919 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G50900.14.9e-5665.09Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 89..168
e-value: 1.5E-6
score: 29.9
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 90..160
IPR044242Protein LHCP TRANSLOCATION DEFECT-likePANTHERPTHR47317PROTEIN LHCP TRANSLOCATION DEFECTcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G919.T1Cucsat.G919.T1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090391 granum assembly
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma