Cucsat.G9147 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G9147
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ATP-dependent Clp protease proteolytic subunit
Location	ctg1658: 391463 .. 395864 (+)
RNA-Seq Expression	Cucsat.G9147
Synteny	Cucsat.G9147

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGTAATTGCGTCTAATCTTAGCTATGTTTCCTTTTCTCTTTGTTTTGTTTTTAGCAGAACGGCGAGTGATCTCGACCGGAGAAGAACTCAGACCTCTAAAATCTATAGGGAAAATCCGTCCAGGCTTTTCTCCATGGCGACTTCTTCACTCTTCCATCTCTCTGCTCCGCCGTCGTTATCAATCGGCAGCTCAAAGTCGTCTTTCCTCTTTGGTACCCAGCTGCCTTTACCTCCCTCTTGTTCGAGAATCTCACGTCGCAGATATGTCCTATCTCCCCATGCCCAACAATCCATGGACCACATTCCTAAGCAGTTTAGAGAAGAAAATCTGAAAGATGGATGTAAGTTTTCAATAATAGTTGAAGTGGTTTATTTGATTCCTTTCATTTTTTTTTTTTTTGGATGTGGTTAATTGATTGATTGGTAACTTTGGAAATTTCTGTGTGTTTGGCCTTTTTGTTTCGTGGGTTCTTGATGATTTTTGGTGGGTGTTTAGGTTTCTTAGAGAAGGAGTTTCGGGATATGAAGATGGCTTTTTAATTGGAATTTTGGCTGCTTGAGATGCTAGGGGATAAATTTTAAATTGTGTGCGCATTTAGCTCATGATTTTGGGGATGGGGAGAAATTGTTGAACTAATATTATTTACAATAAAGAACAATAAAAAGTATAGATAGGACTAACGTTCTTATGTTGAAGCTTATCCATCAAATAAAGAAACACATTGACGGGGACTTTTGAATGGTTGTGAAACTAGCGATGTTAAATGTTAAATTGAGGCTCTTTCTTCTCATGAACACAAGAAACTGATTGCTCAAAGCAACGGAGTGACTGTAAAATGAAACTGGGTTTGCTTTTTTCATTGAAACACTATTTGCTACTTTAACCTCCTGCGTTAAAGTTTTGAAATATGATATGTTGCTCTCTGCATGGGCTGCTTCCAAGGTTGCTCTATCAGTTTCTCATTGGGATCGTTAGTCTTCAGAACAACCCTTTTTTTAAACTTATAATTCTAGTTCATCTATGGTTCAGTTGACGTGCATTGGAATTGAAAGTGCATTTTGAACATTTCACAATCATATTTTTTTACACAAGATAAGCATGATCTTTATGCTTTGATGACTTAATTGGCTGTTCGCCAATTATACTTGTAGCTTTTAATGTTTTAAATCCTAAAGAAAATCAATGCTGTTGCCTAAATCTCCATATCTTCTATTTTATAGTGATTGAGAACTACAAGAATGTTCCTCAGTATCTTTATGGCCTTACGCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTGCAGCGACAGTCAGAATTAGTTAATGAGGTTTGTCTTTCCGTACTTGAGCTTTCGTACACATTAGCTCTTAGTCTGTGACTTTGAGGTTCACCAATTTCATCACGTTTTCAAATCCTTACTAAACTGTAAAGAAAAAGGAAAACGGCCATTTACTTTTTGCTTGTTGATCGTTTTTTGTTCAAACCAAACTTTACTGCTGTGATTTTGTAACCACAACAATTGATTGTTTCTCTGGCAGGAAAAGATATCATCTGCCTACAACTACTTGAATCATGGAGGAATGTGGAGTCTAACTGGCATGGATGGGAAGGGTCCAGATAAATATAGTATGAGCGTTAACATGTATCGTGGGGGAGGAGGTGGACGACCTCGATCATCTCCTCCTGATTTGCCCACTTTGCTCTTAGATGCTCGTATAATCTATTTGGGCATGCCTGTGAGCCACTATAATCATTTTTCCTTAACTCATTGCTGCTATGCAAGATAGTTTATCTCAGGGATCCTTTTTATTTCTTATAATTTACATCTCTGTGTTTCCTTTCAAATCAATGCAGATTGTACCGGCAGTGACCGAGCTTATTGTTGCTCAGTTTATGTGGCTAGATTATGACAACCCGACAAAGCCCATATATCTCTACATAAACTCTTCTGGGACTCAGGTTATATTAGTCGACGTTTCCTTAATCCCTGATGTATCATGTTTCCTTGTGTTAACAGTGGTTGTTTCGTATTGTTGTAATTGTGATTGTTTTGACTATCTTGTTACTTTAATATTCAAGACCTAGATTTTATTAACTTGGTGTTTGTTGATAATTTAGGATGAGAATAGGGAGCTTGTTGGATCTGAAACTGAAGCATATGCTATTGCAGATATGATGTCTGTAAGTAGTTCCTTCCTGAACTCCGTTAATACCTTTTGTCTAAGAATTTACGTTGAACACAATAGCTGGTCTTTGGTATTTGGTAAAATTTGTTTATTTTTTAAATAAAAAATAAGAAACTGATCATCCAGAAAAAAGAAGGCTTTAAAATTTAAGTCCGAAAACAAAAAAGGCAATGACCATCATAAGGGCAACCCAGAAGGAACAGAAACAGAACAGAATTACTTGAGAGCTCCTTGCAGGTAAAATACTAAAAATTAAGCAAAGGAAAATGAAGCGATCTATTCTATAGGTTGTACAAGTTTGTCTTTTGAGTTCTTATAGCAAAGGGAAGTTTCTAAAAGAATTGAGGACAGCAATTCAAAGGAGACATTGAAGTGAGCATATCTCCTTTTCTCAAACCATTCCTTTCTTGAAAGTGCTTGGGCTCCTTCTTATTGAATGTTCCATAAGATAGAAAAAGACCAGCCTGATGTGACAGCCTTCAGCCTTCATTCCTCCTGAAAAAGGCGACATGAAAGGATCTCATCCAACATGGACGTACAATTTACAGTCATCTTCAAGAACCTCATCTGAAAATTATCTGAAAAAGAATGATGCTAAAGAATTTGGTTTTTTTATTGCTCTGGCAAGAACCAACGTGGTCCTAAACTAGAAGTAGTTGATGCTCGGTTAAAGTTAGGTTTCCCCTATGGAAAAGAAAATCAAAATGACTTGGGAGAATAAACTTGATATCCTTAGAATCCAAATCGTGGAAAAAAGCCAATGAAGCCCTGTCTTCTGTCTTGTCTAGCTGAATCCTGGCAGAGCCACTGGAGGCAACCGAAAACATATTTACTTAAAGCTCTCATAAATTCAAGTTAATAGTGGAGAGCCCCAGAGATATTTTCTCCTATTCAATGATAGCTTGTTAATCTGTCAAAATTGGCTGGTAAATTATTTTATGATAAGCAAGGATTTCAGTAAAATAAAATACCACTGATGGTTCAATTTAGTTACGACGTTGTTTTTTTATTTAGCCATCAAATGCTTTCAGTTTAATTCCTTTTGTATTTGTGTAGTACTGCAAATCGGATGTCTATACCATTAACCTTGCGATGGCATATGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTCTCCAGCCTAACGCTTCCAGTACGTTCCTGATGTATTAAAGCTGAGAGATTATTCTTTATTCATTTTGCTTAATTCTACATGTTCATCAGCCATCCAGGAAACCGTGCTGTTTAGTTGAATTACCTTATATTTTTTGGGGGGTTTGATGTTGAAAATGAAAACCAATCAGGATGCTAGTTGAATTAGACCAACAAGCACGATTTACAGCATTATAATTTATAACTTTCTTGCTTCCTTGCTCACAAGGATCAATTCCTTCCCTTTTGACCATTATCTGTGATAACTGCAGCTAAACTATATCTCCCTAAAGTAAATAATTCAAGTGGGTCGGCCATAGATATGTGGATTAAGGTACACACTTCCATCTTTCTGTTGAGCTTTAGCCACTCCCTTTCATTTTTCTGAAAAATAACCTTGTCTTAGGCTAAAGAACTCGATGCCAACACCGAGTACTATCTCGAGCTACTAGCTAAAGGAATTGGTAAGCCCAAGGAAGAGATTAATAAAGATATCCAACTATCCAAATACTTCAAACCACAAGAAGCTATTGACTACGGCATTGCAGACAAGATTATCAAACCTGAAGATCCTGCCTATGAAAAAAAGGTCATTATCACATACCATCTCTCTCTTGTTTTCTTTTAAGATGTTTTGAATTCAATAGCACAGTTCTAACACTCCACTTTTACAATCAGAATTACGATGAGATGCTTTCACAGTCGAAAGCTGCAAATGCGAGGAGAGGACGAGGAGTCAATCCACAAGCGGCGCCAACTGGGTCCAGTTGGCGATAATCAGAGATAGTCTAGAAGTGTACAAATAGAAGGTTCCATATCCCCACTATTGGCTAGCCACAACCTCATATTAGCTTTATAGTTACTTATGTCCTCTCTTTTTCGTGTTTTCGGGGTTCTGGTTTACTTCTGAACCACTTGATAACCGAGCACCACCGATATGATCTTTATAGGCCATTGTATAAAAGACTATCTCTCATTAAGGCATTATGAATTAATGTGATGTTTCCTAAGCATTGCTCTTGCTCTTACTTTTTGCAATCTTATGTGAACCAGTCCTAGCCTAGCTATATGACATCATAGAGAGTTCATTCCTCGAGCCTACCTGCTTATCTAAAAGGCTGTATATTAACTGTCTTTCAAGTTCTATCTATGTTCACCTTTTCTTCAGGTGAATTTAGTTGAATCGTAGCTAACATGAACATGGTTTTATGTTCACCTTTTTCTTAAGGTGAGTTTAGTTTAATTGTAACTAACATGACATTCCTTCTTAGAGATTAGCATTTTCTTAGAGAT

Coding sequence (CDS)

ATGGCGACTTCTTCACTCTTCCATCTCTCTGCTCCGCCGTCGTTATCAATCGGCAGCTCAAAGTCGTCTTTCCTCTTTGGTACCCAGCTGCCTTTACCTCCCTCTTGTTCGAGAATCTCACGTCGCAGATATGTCCTATCTCCCCATGCCCAACAATCCATGGACCACATTCCTAAGCAGTTTAGAGAAGAAAATCTGAAAGATGGATTGATTGAGAACTACAAGAATGTTCCTCAGTATCTTTATGGCCTTACGCCTTCACAAATGGACATGTTCATGACAGAAGATAATCCCGTGCAGCGACAGTCAGAATTAGTTAATGAGGAAAAGATATCATCTGCCTACAACTACTTGAATCATGGAGGAATGTGGAGTCTAACTGGCATGGATGGGAAGGGTCCAGATAAATATAGTATGAGCGTTAACATGTATCGTGGGGGAGGAGGTGGACGACCTCGATCATCTCCTCCTGATTTGCCCACTTTGCTCTTAGATGCTCGTATAATCTATTTGGGCATGCCTATTGTACCGGCAGTGACCGAGCTTATTGTTGCTCAGTTTATGTGGCTAGATTATGACAACCCGACAAAGCCCATATATCTCTACATAAACTCTTCTGGGACTCAGGATGAGAATAGGGAGCTTGTTGGATCTGAAACTGAAGCATATGCTATTGCAGATATGATGTCTTACTGCAAATCGGATGTCTATACCATTAACCTTGCGATGGCATATGGTCAAGCGGCAATGCTTTTGTCACTTGGAACCAAGGGTTACCGTGCTCTCCAGCCTAACGCTTCCACTAAACTATATCTCCCTAAAGTAAATAATTCAAGTGGGTCGGCCATAGATATGTGGATTAAGGCTAAAGAACTCGATGCCAACACCGAGTACTATCTCGAGCTACTAGCTAAAGGAATTGGTAAGCCCAAGGAAGAGATTAATAAAGATATCCAACTATCCAAATACTTCAAACCACAAGAAGCTATTGACTACGGCATTGCAGACAAGATTATCAAACCTGAAGATCCTGCCTATGAAAAAAAGAATTACGATGAGATGCTTTCACAGTCGAAAGCTGCAAATGCGAGGAGAGGACGAGGAGTCAATCCACAAGCGGCGCCAACTGGGTCCAGTTGGCGATAA

Protein sequence

MATSSLFHLSAPPSLSIGSSKSSFLFGTQLPLPPSCSRISRRRYVLSPHAQQSMDHIPKQFREENLKDGLIENYKNVPQYLYGLTPSQMDMFMTEDNPVQRQSELVNEEKISSAYNYLNHGGMWSLTGMDGKGPDKYSMSVNMYRGGGGGRPRSSPPDLPTLLLDARIIYLGMPIVPAVTELIVAQFMWLDYDNPTKPIYLYINSSGTQDENRELVGSETEAYAIADMMSYCKSDVYTINLAMAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELLAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAANARRGRGVNPQAAPTGSSWR

Homology

[Close]

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot
Match: Q9XJ35 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR1 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-42
Identity = 92/135 (68.15%), Postives = 109/135 (80.74%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MA+GQAAMLLSLG KGYRA+QP++STKLYLPKVN SSG+AIDMWIKAKELDANTEYY+EL
Sbjct: 256 MAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIEL 315

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKG GK KE+IN+DI+  KY + Q AIDYGIADKI   +D ++EK++YD  L+Q     
Sbjct: 316 LAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADKIADSQDSSFEKRDYDGTLAQ----R 375

Query: 121 ARRGRGVNPQAAPTG 136
           A R  G +P AAP G
Sbjct: 376 AMRPGGGSP-AAPAG 385

[Close]

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot
Match: P74466 (Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=clpR PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 2   AYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELL 61
           A G AAM+LS GTKGYRA  P+A+  L   +   + G A D+ I+AKE+ +N +  LE+L
Sbjct: 118 AMGTAAMILSSGTKGYRASLPHATIVLNQNR-TGAQGQATDIQIRAKEVISNKQTMLEIL 177

Query: 62  AKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPA 104
           +   G+ +E++ KD+  + Y  P +A +YG+ D+++  E PA
Sbjct: 178 SLNTGQTQEKLAKDMDRTFYLTPAQAKEYGLIDRVL--ESPA 216

[Close]

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot
Match: Q8LB10 (ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CLPR4 PE=1 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.0e-11
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 0


Query: 2   AYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELL 61
           A+G+AA+LL+ G KG R+  P+++  +  P +    G A D+ I  KE+       ++L 
Sbjct: 190 AWGEAALLLTAGAKGNRSALPSSTIMIKQP-IARFQGQATDVEIARKEIKHIKTEMVKLY 249

Query: 62  AKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPE 101
           +K IGK  E+I  D++  KYF P EA++YGI DK++  E
Sbjct: 250 SKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNE 287

[Close]

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot
Match: Q7NEW1 (ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=clpP2 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-11
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           +A G +A+L++ GTKG R   PN+   LY P    + G A D+ I+A+EL        +L
Sbjct: 106 LAGGFSALLMAAGTKGQRMSLPNSRIILYQP-YGGARGQATDINIRAQELLTTKRTLNQL 165

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKP 100
           L+   GK  E+I+KD +   Y  PQEA+ YG+ DK+++P
Sbjct: 166 LSIHTGKTVEQIDKDTERLFYMSPQEAVSYGLIDKVLEP 203

[Close]

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot
Match: Q8G5R0 (ATP-dependent Clp protease proteolytic subunit 1 OS=Bifidobacterium longum (strain NCC 2705) OX=206672 GN=clpP1 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.8e-11
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 0


Query: 2   AYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLELL 61
           A   AA+LL+ GTKG R + PNA   ++ P ++   G A ++ I+AKE+    E+  E L
Sbjct: 134 AASAAAILLASGTKGKRLMLPNARVLIHQPAIDQGFGKATEIEIQAKEMLRMREWLEETL 193

Query: 62  AKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIK 99
           AK  G+  E+I +DI++  +    EA +YGI D++++
Sbjct: 194 AKHTGQDVEKIRRDIEVDTFLTAPEAKEYGIVDEVLE 230

[Close]

BLAST of Cucsat.G9147 vs. NCBI nr
Match: XP_011658880.1 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Cucumis sativus] >KGN43854.1 hypothetical protein Csa_017348 [Cucumis sativus])

HSP 1 Score: 276 bits (706), Expect = 4.65e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL
Sbjct: 243 MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 302

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN
Sbjct: 303 LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 362

Query: 121 ARRGRGVNPQAAPTGSSWR 139
           ARRGRGVNPQAAPTGSSWR
Sbjct: 363 ARRGRGVNPQAAPTGSSWR 381

[Close]

BLAST of Cucsat.G9147 vs. NCBI nr
Match: XP_008455029.1 (PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 223 bits (568), Expect = 3.11e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MA+GQAAMLLSLGTKGYRALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYYLEL
Sbjct: 245 MAFGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGTVIDMWIKAKELDANTEYYLEL 304

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ SKYF+ QEAIDYGIADKII  +D A+EK+NYDEML+QSKAA 
Sbjct: 305 LAKGIGKPKEEITKDIQRSKYFQAQEAIDYGIADKIITSQDSAFEKRNYDEMLAQSKAA- 364

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G NPQAAPTG
Sbjct: 365 -RRGAGGNPQAAPTG 377

[Close]

BLAST of Cucsat.G9147 vs. NCBI nr
Match: KAA0031363.1 (ATP-dependent Clp protease proteolytic subunit-related protein 1 [Cucumis melo var. makuwa] >TYK06815.1 ATP-dependent Clp protease proteolytic subunit-related protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 223 bits (568), Expect = 6.48e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MA+GQAAMLLSLGTKGYRALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYYLEL
Sbjct: 272 MAFGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGTVIDMWIKAKELDANTEYYLEL 331

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ SKYF+ QEAIDYGIADKII  +D A+EK+NYDEML+QSKAA 
Sbjct: 332 LAKGIGKPKEEITKDIQRSKYFQAQEAIDYGIADKIITSQDSAFEKRNYDEMLAQSKAA- 391

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G NPQAAPTG
Sbjct: 392 -RRGAGGNPQAAPTG 404

[Close]

BLAST of Cucsat.G9147 vs. NCBI nr
Match: KAF8013723.1 (hypothetical protein BT93_I1556 [Corymbia citriodora subsp. variegata])

HSP 1 Score: 217 bits (552), Expect = 9.66e-67
Identity = 111/135 (82.22%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKGYRALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYY+EL
Sbjct: 252 MAYGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIEL 311

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ  KYF+ QEAI+YGIADKII   D A+EK+NYDEML+QSKA  
Sbjct: 312 LAKGIGKPKEEIEKDIQRPKYFRAQEAIEYGIADKIIDSRDAAFEKRNYDEMLAQSKAM- 371

Query: 121 ARRGRGVNPQAAPTG 135
            RRG GV PQAAP+G
Sbjct: 372 -RRGAGVGPQAAPSG 384

[Close]

BLAST of Cucsat.G9147 vs. NCBI nr
Match: XP_031375499.1 (ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Punica granatum] >XP_031380083.1 ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Punica granatum] >OWM79170.1 hypothetical protein CDL15_Pgr003341 [Punica granatum] >PKI71372.1 hypothetical protein CRG98_008231 [Punica granatum])

HSP 1 Score: 217 bits (552), Expect = 1.20e-66
Identity = 110/135 (81.48%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKG+RALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYY+EL
Sbjct: 260 MAYGQAAMLLSLGTKGFRALQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIEL 319

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI+KDIQ  KYF+ QEAIDYGIADKII   D A+EK+NYDEML+QSKA  
Sbjct: 320 LAKGIGKPKEEISKDIQRPKYFRAQEAIDYGIADKIIDSRDAAFEKRNYDEMLAQSKAM- 379

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G+ PQAAP+G
Sbjct: 380 -RRGAGIGPQAAPSG 392

[Close]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL
Match: A0A0A0K4G3 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa_7G071430 PE=3 SV=1)

HSP 1 Score: 276 bits (706), Expect = 2.25e-90
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL
Sbjct: 243 MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 302

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN
Sbjct: 303 LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 362

Query: 121 ARRGRGVNPQAAPTGSSWR 139
           ARRGRGVNPQAAPTGSSWR
Sbjct: 363 ARRGRGVNPQAAPTGSSWR 381

[Close]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL
Match: A0A1S3BZX8 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103495302 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 1.50e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MA+GQAAMLLSLGTKGYRALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYYLEL
Sbjct: 245 MAFGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGTVIDMWIKAKELDANTEYYLEL 304

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ SKYF+ QEAIDYGIADKII  +D A+EK+NYDEML+QSKAA 
Sbjct: 305 LAKGIGKPKEEITKDIQRSKYFQAQEAIDYGIADKIITSQDSAFEKRNYDEMLAQSKAA- 364

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G NPQAAPTG
Sbjct: 365 -RRGAGGNPQAAPTG 377

[Close]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL
Match: A0A5A7SMD0 (ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001180 PE=3 SV=1)

HSP 1 Score: 223 bits (568), Expect = 3.14e-69
Identity = 115/135 (85.19%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MA+GQAAMLLSLGTKGYRALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYYLEL
Sbjct: 272 MAFGQAAMLLSLGTKGYRALQPNSSTKLYLPKVNRSSGTVIDMWIKAKELDANTEYYLEL 331

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ SKYF+ QEAIDYGIADKII  +D A+EK+NYDEML+QSKAA 
Sbjct: 332 LAKGIGKPKEEITKDIQRSKYFQAQEAIDYGIADKIITSQDSAFEKRNYDEMLAQSKAA- 391

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G NPQAAPTG
Sbjct: 392 -RRGAGGNPQAAPTG 404

[Close]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL
Match: A0A218X3B2 (ATP-dependent Clp protease proteolytic subunit OS=Punica granatum OX=22663 GN=LOC116189972 PE=3 SV=1)

HSP 1 Score: 217 bits (552), Expect = 5.80e-67
Identity = 110/135 (81.48%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKG+RALQPN+STKLYLPKVN SSG+ IDMWIKAKELDANTEYY+EL
Sbjct: 260 MAYGQAAMLLSLGTKGFRALQPNSSTKLYLPKVNRSSGAVIDMWIKAKELDANTEYYIEL 319

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI+KDIQ  KYF+ QEAIDYGIADKII   D A+EK+NYDEML+QSKA  
Sbjct: 320 LAKGIGKPKEEISKDIQRPKYFRAQEAIDYGIADKIIDSRDAAFEKRNYDEMLAQSKAM- 379

Query: 121 ARRGRGVNPQAAPTG 135
            RRG G+ PQAAP+G
Sbjct: 380 -RRGAGIGPQAAPSG 392

[Close]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL
Match: A0A059AMN6 (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_I01073 PE=3 SV=1)

HSP 1 Score: 214 bits (546), Expect = 3.74e-66
Identity = 109/135 (80.74%), Postives = 120/135 (88.89%), Query Frame = 0


Query: 1   MAYGQAAMLLSLGTKGYRALQPNASTKLYLPKVNNSSGSAIDMWIKAKELDANTEYYLEL 60
           MAYGQAAMLLSLGTKG+RALQPN+STKLYLPKVN SSG+ IDMW+KAKELDANTEYY+EL
Sbjct: 252 MAYGQAAMLLSLGTKGFRALQPNSSTKLYLPKVNRSSGAVIDMWLKAKELDANTEYYIEL 311

Query: 61  LAKGIGKPKEEINKDIQLSKYFKPQEAIDYGIADKIIKPEDPAYEKKNYDEMLSQSKAAN 120
           LAKGIGKPKEEI KDIQ  KYF+ QEAI+YGIADKII   D A+EK+NYDEML+QSKA  
Sbjct: 312 LAKGIGKPKEEIEKDIQRPKYFRAQEAIEYGIADKIIDSRDSAFEKRNYDEMLAQSKAM- 371

Query: 121 ARRGRGVNPQAAPTG 135
            RRG GV PQAAP+G
Sbjct: 372 -RRGAGVGPQAAPSG 384

The following BLAST results are available for this feature:

BLAST of Cucsat.G9147 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ35	1.9e-42	68.15	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
P74466	3.5e-12	40.20	Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp...	[more]
Q8LB10	1.0e-11	38.38	ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic ...	[more]
Q7NEW1	2.3e-11	39.39	ATP-dependent Clp protease proteolytic subunit 2 OS=Gloeobacter violaceus (strai...	[more]
Q8G5R0	3.8e-11	37.11	ATP-dependent Clp protease proteolytic subunit 1 OS=Bifidobacterium longum (stra...	[more]

BLAST of Cucsat.G9147 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658880.1	4.65e-90	100.00	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic ...	[more]
XP_008455029.1	3.11e-69	85.19	PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chl...	[more]
KAA0031363.1	6.48e-69	85.19	ATP-dependent Clp protease proteolytic subunit-related protein 1 [Cucumis melo v...	[more]
KAF8013723.1	9.66e-67	82.22	hypothetical protein BT93_I1556 [Corymbia citriodora subsp. variegata]	[more]
XP_031375499.1	1.20e-66	81.48	ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-...	[more]

BLAST of Cucsat.G9147 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4G3	2.25e-90	100.00	ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A1S3BZX8	1.50e-69	85.19	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7SMD0	3.14e-69	85.19	ATP-dependent Clp protease proteolytic subunit OS=Cucumis melo var. makuwa OX=11...	[more]
A0A218X3B2	5.80e-67	81.48	ATP-dependent Clp protease proteolytic subunit OS=Punica granatum OX=22663 GN=LO...	[more]
A0A059AMN6	3.74e-66	80.74	ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis OX=71139 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PFAM	PF00574	CLP_protease	coord: 26..62 e-value: 1.3E-5 score: 25.2
IPR023562	Clp protease proteolytic subunit /Translocation-enhancing protein TepA	PANTHER	PTHR10381	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT	coord: 24..63
None	No IPR available	GENE3D	3.90.226.10		coord: 18..87 e-value: 1.1E-8 score: 37.0
None	No IPR available	PANTHER	PTHR10381:SF55	ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC	coord: 24..63
IPR029045	ClpP/crotonase-like domain superfamily	SUPERFAMILY	52096	ClpP/crotonase	coord: 23..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G9147.T1	Cucsat.G9147.T1	mRNA
Cucsat.G9147.T9	Cucsat.G9147.T9	mRNA
Cucsat.G9147.T2	Cucsat.G9147.T2	mRNA
Cucsat.G9147.T6	Cucsat.G9147.T6	mRNA
Cucsat.G9147.T3	Cucsat.G9147.T3	mRNA
Cucsat.G9147.T7	Cucsat.G9147.T7	mRNA
Cucsat.G9147.T5	Cucsat.G9147.T5	mRNA
Cucsat.G9147.T4	Cucsat.G9147.T4	mRNA
Cucsat.G9147.T8	Cucsat.G9147.T8	mRNA
Cucsat.G9147.T10	Cucsat.G9147.T10	mRNA
Cucsat.G9147.T11	Cucsat.G9147.T11	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006508	proteolysis
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009368	endopeptidase Clp complex
cellular_component	GO:0009526	plastid envelope
molecular_function	GO:0051117	ATPase binding
molecular_function	GO:0004176	ATP-dependent peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004252	serine-type endopeptidase activity