Cucsat.G8925 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8925
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	ctg1635: 1934564 .. 1936798 (-)
RNA-Seq Expression	Cucsat.G8925
Synteny	Cucsat.G8925

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAGCAATATGAGGTTGGACCATATGATGTCTCCTCCATGATACGATCTAATTCTTTCATTTTTCTTGTGTTTCCCCCCTTCTATTACTCCCCCACTCAACAAAATTCTTGTTCCCCTTCTGATCTCTTCACTCTGCTACCTCCAAAACATTTACCTAATTTGTTTTCTTTGTTAAATCTAATCTTGAAGAGATCGATCATATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCATCATCAAATTCCTCTTCTTCTTCCTCAGCTCTAATCGTTGTTGTTGACGATCACAATCATCATCAACAACAACAACAACAGTTTGAACGAGGAGATGAGCAAGCAGCACCAACATCGTCAGTAGTAGGCGCACCAGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACTTTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTGAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCCCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTAAGGGAAGTTAGGGATTCTCAATCCAAGGCCAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCGTCAACAAGGTAAATATATATCCTAATTCAAATATTAATATTAATATATGTATGCTATTTAGTATTACGATGACGAGGATAGTTAAACGCTAATCCAACAAATCTAATCTTGAAGTACTTCAAATTCAAACCTTTGATTTTTAGGAAAAGAACTAAATGATTAATGTATATATCAAAGTTTTTGTTGGTTTCAAAACATGTTTGAGATTGATTATGAAGTTTATTTATTCAGGTCGATCAAAATACACATAATTTAATCATTCAAAATCAAAATAATATATGGTTTTATACTTTCCAAAATTAGTAAGATATCAACATATAACAAAGTGAATGAACATCATCAATATTATTTTGTTTTTATGTTAAGAGAAAATTCAAGAAATAATCATCGTAACTCTGTCAAAATAAGTTTAGCTCATCCATAGTTTAACATGATTTTTCACCTTAAATGAGATTAAAGGTTTGCAATTTTCCATCCTGATAGTTGTTGAAAATAAAAAAAAAGCTTCAAAGCCCTAAATTTCATGATACATGAGCTAGGGTTTATGGTGGGTTTCTTTAGAATATATATGATTAGAGGTCTAGAACAATTATTAGTATCTTTAACTTTTTCCTTAGACACCTTTTTCTTTTTCAAGAAATATAAAATTATCATTTGTAATATTCCAAATAAATCAATAACTATTTCCATCCCTTTTTTCTTTCATTTGTCTCTTTAGTCTTTCTATTTTATTGTATCCCATAACCCAATTTTGTTTTAATATTTAATAACACAGAATTGCTGCAAACTAAACTATACATTTAAATCATATATTTTGATTTTTTTTTTTCAATTTCGTCTCTATATTTTTTAAAGTTTTAACATCCTCCTCCTTAACCCTTCAATTATATACAATTATCAAATGTTTATAGTAATTAATAATGCATTATACGCATGGTTACGTTCTATCTATGAAAAGAGTATATAGTGATAATGTGTTGAAAATTATCAAAACTAGATTAAGGGTATATATAATTCAACTATATGTTTGGGATAAAATGAAGATCATGTATGAACTTTGTTGGTTGCTTAATTATTACAAATATATAAAACTGTTTTTCAGGAGCCTAAGAGAAGGAGTAGTGAGCAGTTGATGTGTTTTTGGAGGGTCTCTCAGTTGCAATATGGATATTTGATCTCAAAATTAAACAACACCACATGCATGCAAAAAGCTCTTTTGAGTTAAAAGTAATTTTAATTAAGTTGTTTTTCTTTAATCTTTCCTTATACCCTTAAGCATTGTGGTCTCTTTTTTTTCTATCATATTTTGGTTCTTCGAATTGGAGTTTCAGCACAGCCAATTTCTGGATCAAATATGGGTATGTCATTGCAAAATTACTCTCTCTTTTTTATTGCCTTTTTAATTCATAGAGATTTTGTGTCAATTTTATTATTATATA

Coding sequence (CDS)

ATGTCAAGTAGTAAAGGCAAGGATGTTCATGAAGGATCATCATCAAATTCCTCTTCTTCTTCCTCAGCTCTAATCGTTGTTGTTGACGATCACAATCATCATCAACAACAACAACAACAGTTTGAACGAGGAGATGAGCAAGCAGCACCAACATCGTCAGTAGTAGGCGCACCAGTGATTAGTCGGTACGAGTCACAAAAGAGGAGAGATTGGTACACTTTTGGGCAATATTTGAGGAACCAAAGGCCACCATTGGCTATATCACAATGCAATTCAAGTCATGTATTGGAATTCCTGAGATATCTAGACCAATTTGGGAAGACAAAAGTGCATTTAAATGGGTGTGGTTTCTTTGGAGAACCTGAGCCAGCAGGGCCTTGTACTTGCCCTCTTAGACAAGCTTGGGGCAGCCTTGATGCCCTTATTGGTCGCCTTAGAGCTGCTTATGAAGAAAATGGAGGCTCATCAGACACTAATCCATTTGCTAGTGGTGCTATTAGGGTTTATTTAAGGGAAGTTAGGGATTCTCAATCCAAGGCCAGAGGAATCCCATATAAGAAGAAGAAGAAAAAGAAGATTCCAATTAACACTCGTCAACAAGGAGCCTAA

Protein sequence

MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARGIPYKKKKKKKIPINTRQQGA

Homology

[Close]

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 9.1e-62
Identity = 109/132 (82.58%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDW TFGQYL+NQRPP+ +S C+ +HVL+FLRYLDQFGKTKVH+ GC F+G+
Sbjct: 24  SRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFGKTKVHVPGCMFYGQ 83

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP  PCTCPLRQAWGSLDALIGRLRAAYEENGG  +TNPFASGAIRVYLREVR+ Q+KA
Sbjct: 84  PEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAIRVYLREVRECQAKA 143

Query: 181 RGIPYKKKKKKK 193
           RGIPYKKKKKKK
Sbjct: 144 RGIPYKKKKKKK 155

[Close]

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot
Match: Q9ZVA0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LSH7 PE=1 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 9.4e-59
Identity = 116/190 (61.05%), Postives = 138/190 (72.63%), Query Frame = 0


Query: 3   SSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVISR 62
           S+KGK + EGSS                     Q Q Q +    Q+ P       P +SR
Sbjct: 5   SNKGKGIAEGSS-------------------QPQSQPQPQPHQPQSPP-----NPPALSR 64

Query: 63  YESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGEPE 122
           YESQKRRDW TF QYLRNQ+PP+ ISQC S+H+L+FL+YLDQFGKTKVH++GC FFG+ E
Sbjct: 65  YESQKRRDWNTFCQYLRNQQPPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVE 124

Query: 123 PAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKARG 182
           PAG C CPL+QAWGSLDALIGRLRAA+EENGG  + NPFA G IRV+LREVRDSQ+KARG
Sbjct: 125 PAGQCNCPLKQAWGSLDALIGRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARG 170

Query: 183 IPYKKKKKKK 193
           +PYKK+KK+K
Sbjct: 185 VPYKKRKKRK 170

[Close]

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 100/133 (75.19%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLREVRDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 180 ARGIPYKKKKKKK 193
           ARGIPY+KKK+K+
Sbjct: 149 ARGIPYEKKKRKR 161

[Close]

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 100/133 (75.19%), Postives = 121/133 (90.98%), Query Frame = 0


Query: 60  ISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFG 119
           +SRYESQKRRDW TF QYLRN RPPL +++C+ +HV+EFLRYLDQFGKTKVH +GC F+G
Sbjct: 29  LSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLRYLDQFGKTKVHASGCAFYG 88

Query: 120 EPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSK 179
           +P P GPC CPLRQAWGSLDALIGRLRAAYEE+GG+ ++NPFA+ A+R+YLREVRDSQ+K
Sbjct: 89  QPSPPGPCPCPLRQAWGSLDALIGRLRAAYEESGGTPESNPFAARAVRIYLREVRDSQAK 148

Query: 180 ARGIPYKKKKKKK 193
           ARGIPY+KKK+K+
Sbjct: 149 ARGIPYEKKKRKR 161

[Close]

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-58
Identity = 104/147 (70.75%), Postives = 124/147 (84.35%), Query Frame = 0


Query: 48  AAPTSSVVGAPVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGK 107
           ++ +S   G   +SRYE+QKRRDW TFGQYLRN RPPL++S+C+ +HVLEFLRYLDQFGK
Sbjct: 34  SSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGK 93

Query: 108 TKVHLNGCGFFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIR 167
           TKVH + C FFG P P  PC CPLRQAWGSLDALIGRLRAA+EENGGS +TNPF + A+R
Sbjct: 94  TKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVR 153

Query: 168 VYLREVRDSQSKARGIPYKKKKKKKIP 195
           +YLREVRDSQ+KARGI Y+KKK+K+ P
Sbjct: 154 LYLREVRDSQAKARGISYEKKKRKRPP 180

[Close]

BLAST of Cucsat.G8925 vs. NCBI nr
Match: XP_004146094.2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypothetical protein Csa_012765 [Cucumis sativus])

HSP 1 Score: 398 bits (1022), Expect = 1.20e-139
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQ FERGDEQAAPTSSVVGAPVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQ-FERGDEQAAPTSSVVGAPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQGA 202
           RGIPYKKKKKKKIPINT QQGA
Sbjct: 181 RGIPYKKKKKKKIPINTHQQGA 201

[Close]

BLAST of Cucsat.G8925 vs. NCBI nr
Match: XP_008463732.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 372 bits (954), Expect = 2.60e-129
Identity = 192/206 (93.20%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDD----HNHHQQQQQQFERGDEQAAPTSSVVG 60
           MSSSKGKDVHEGSSSNSSSSSSAL+VVVDD    H+HHQQQQQQFERGDE AAPT     
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDE-AAPT----- 60

Query: 61  APVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120
            PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG
Sbjct: 61  -PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120

Query: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180
           FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS
Sbjct: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180

Query: 181 QSKARGIPYKKKKKKKIPINTRQQGA 202
           QSKARGIPYKKKKKKKIPINT QQGA
Sbjct: 181 QSKARGIPYKKKKKKKIPINTHQQGA 199

[Close]

BLAST of Cucsat.G8925 vs. NCBI nr
Match: KAA0066771.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK27918.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa])

HSP 1 Score: 370 bits (949), Expect = 2.75e-128
Identity = 191/205 (93.17%), Postives = 193/205 (94.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDD----HNHHQQQQQQFERGDEQAAPTSSVVG 60
           MSSSKGKDVHEGSSSNSSSSSSAL+VVVDD    H+HHQQQQQQFERGDE AAPT     
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDE-AAPT----- 60

Query: 61  APVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120
            PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG
Sbjct: 61  -PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120

Query: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180
           FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS
Sbjct: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180

Query: 181 QSKARGIPYKKKKKKKIPINTRQQG 201
           QSKARGIPYKKKKKKKIPINT QQG
Sbjct: 181 QSKARGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of Cucsat.G8925 vs. NCBI nr
Match: XP_038896716.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida])

HSP 1 Score: 339 bits (869), Expect = 2.26e-116
Identity = 179/200 (89.50%), Postives = 183/200 (91.50%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MSSSKGKDVHEGSSSNSSSSSS LIVVVDDHN   QQQ QF+R  E+AA  ++   APV 
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSS-LIVVVDDHN---QQQHQFQR--EEAAIAATTTIAPV- 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP GPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQ 200
           RGIPYKKKKKKK PI T QQ
Sbjct: 181 RGIPYKKKKKKKNPITTHQQ 193

[Close]

BLAST of Cucsat.G8925 vs. NCBI nr
Match: XP_022937367.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 309 bits (791), Expect = 3.12e-104
Identity = 161/202 (79.70%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MS+SKG DV EGSSSNSSSSSS L+ V++D N                 P ++ V APV 
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSS-LVAVINDRNQ----------------PAATAV-APV- 92

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+
Sbjct: 93  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 152

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP GPCTCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKA
Sbjct: 153 PEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 212

Query: 181 RGIPYKKKKKKKIPINTRQQGA 202
           RGIPYKKKKKKKIP +T Q GA
Sbjct: 213 RGIPYKKKKKKKIPTHTHQPGA 215

[Close]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL
Match: A0A0A0L028 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 SV=1)

HSP 1 Score: 398 bits (1022), Expect = 5.79e-140
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQ FERGDEQAAPTSSVVGAPVI
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQ-FERGDEQAAPTSSVVGAPVI 60

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE
Sbjct: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA
Sbjct: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180

Query: 181 RGIPYKKKKKKKIPINTRQQGA 202
           RGIPYKKKKKKKIPINT QQGA
Sbjct: 181 RGIPYKKKKKKKIPINTHQQGA 201

[Close]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL
Match: A0A1S3CJY2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103501807 PE=3 SV=1)

HSP 1 Score: 372 bits (954), Expect = 1.26e-129
Identity = 192/206 (93.20%), Postives = 194/206 (94.17%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDD----HNHHQQQQQQFERGDEQAAPTSSVVG 60
           MSSSKGKDVHEGSSSNSSSSSSAL+VVVDD    H+HHQQQQQQFERGDE AAPT     
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDE-AAPT----- 60

Query: 61  APVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120
            PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG
Sbjct: 61  -PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120

Query: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180
           FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS
Sbjct: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180

Query: 181 QSKARGIPYKKKKKKKIPINTRQQGA 202
           QSKARGIPYKKKKKKKIPINT QQGA
Sbjct: 181 QSKARGIPYKKKKKKKIPINTHQQGA 199

[Close]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL
Match: A0A5D3DWV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001030 PE=3 SV=1)

HSP 1 Score: 370 bits (949), Expect = 1.33e-128
Identity = 191/205 (93.17%), Postives = 193/205 (94.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDD----HNHHQQQQQQFERGDEQAAPTSSVVG 60
           MSSSKGKDVHEGSSSNSSSSSSAL+VVVDD    H+HHQQQQQQFERGDE AAPT     
Sbjct: 1   MSSSKGKDVHEGSSSNSSSSSSALMVVVDDQNHHHHHHQQQQQQFERGDE-AAPT----- 60

Query: 61  APVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120
            PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG
Sbjct: 61  -PVISRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCG 120

Query: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180
           FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS
Sbjct: 121 FFGEPEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDS 180

Query: 181 QSKARGIPYKKKKKKKIPINTRQQG 201
           QSKARGIPYKKKKKKKIPINT QQG
Sbjct: 181 QSKARGIPYKKKKKKKIPINTHQQG 198

[Close]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL
Match: A0A6J1FB04 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111443674 PE=3 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.51e-104
Identity = 161/202 (79.70%), Postives = 172/202 (85.15%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MS+SKG DV EGSSSNSSSSSS L+ V++D N                 P ++ V APV 
Sbjct: 33  MSTSKGNDVGEGSSSNSSSSSS-LVAVINDRNQ----------------PAATAV-APV- 92

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+
Sbjct: 93  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 152

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP GPCTCPL+QAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREV+DSQSKA
Sbjct: 153 PEPPGPCTCPLKQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVKDSQSKA 212

Query: 181 RGIPYKKKKKKKIPINTRQQGA 202
           RGIPYKKKKKKKIP +T Q GA
Sbjct: 213 RGIPYKKKKKKKIPTHTHQPGA 215

[Close]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL
Match: A0A6J1IH94 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111476929 PE=3 SV=1)

HSP 1 Score: 303 bits (777), Expect = 2.43e-102
Identity = 159/202 (78.71%), Postives = 168/202 (83.17%), Query Frame = 0


Query: 1   MSSSKGKDVHEGSSSNSSSSSSALIVVVDDHNHHQQQQQQFERGDEQAAPTSSVVGAPVI 60
           MS+SKG D  EGSSSNSSSSSS  + V+DD N  QQQ                 V  PV 
Sbjct: 38  MSTSKGNDFGEGSSSNSSSSSS-FVAVIDDRNQQQQQ----------------AVAVPV- 97

Query: 61  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLEFLRYLDQFGKTKVHLNGCGFFGE 120
           SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVL+FLRYLDQFGKTKVHLNGCGFFG+
Sbjct: 98  SRYESQKRRDWYTFGQYLRNQRPPLAISQCNSSHVLDFLRYLDQFGKTKVHLNGCGFFGQ 157

Query: 121 PEPAGPCTCPLRQAWGSLDALIGRLRAAYEENGGSSDTNPFASGAIRVYLREVRDSQSKA 180
           PEP GPCTCPLRQAWGSLDALIGRLRAAYEENGG+SDTNPFASGAIRVYLRE++DSQSKA
Sbjct: 158 PEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGTSDTNPFASGAIRVYLRELKDSQSKA 217

Query: 181 RGIPYKKKKKKKIPINTRQQGA 202
           RGIPYKKKKKK IP +T Q GA
Sbjct: 218 RGIPYKKKKKK-IPSHTHQPGA 220

The following BLAST results are available for this feature:

BLAST of Cucsat.G8925 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	9.1e-62	82.58	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q9ZVA0	9.4e-59	61.05	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XED8	1.2e-58	75.19	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	1.2e-58	75.19	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9LW68	1.2e-58	70.75	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Cucsat.G8925 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146094.2	1.20e-139	99.01	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN55073.1 hypoth...	[more]
XP_008463732.1	2.60e-129	93.20	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo]	[more]
KAA0066771.1	2.75e-128	93.17	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_038896716.1	2.26e-116	89.50	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Benincasa hispida]	[more]
XP_022937367.1	3.12e-104	79.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]

BLAST of Cucsat.G8925 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L028	5.79e-140	99.01	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G627230 PE=3 S...	[more]
A0A1S3CJY2	1.26e-129	93.20	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5D3DWV8	1.33e-128	93.17	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1FB04	1.51e-104	79.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1IH94	2.43e-102	78.71	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 57..175 e-value: 1.2E-61 score: 206.4
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 62..189 score: 75.326294
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..202
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 1..199
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8925.T1	Cucsat.G8925.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus