Cucsat.G8641 (gene) Cucumber (B10) v3

Overview
NameCucsat.G8641
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionINO80 complex subunit C
Locationctg1558: 1169404 .. 1175324 (-)
RNA-Seq ExpressionCucsat.G8641
SyntenyCucsat.G8641
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAGATCCATAATGCTCGAAACTATTACATATTTACATTCGCTCCTCCCAAATACAAACACAAACACAGCTTAATTCAGTATTAAAAGCGCGGCAAGGCAGTACGACCGGTAAATTGAATCGGTGATTTTGCAGGCTGCCGCCATGGACTAATCGTTAGGGCTTCTGTTTAACCTTTGAATGTCAAAAGTATTTCAGAAATCAGAAGATATTTAATTCAGTATTAAACAAGAGTTTATTAAGATGGAGTCGGAGGTGATAGAAGCGGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAACTGTAAGATTTCCTTTTCTCTTTTCCGTCATTATTCTCTTACTATTTCTCCTACTTTTGATTACGCCTTTGACTTGAGAAGAACTTTGTTTCTTGCTGCTTTAATGCATGGGCTGCGATATATTTTTTTTTCGTTTCATAATTGTTTAAGAGGTTAACTCTATGTTTTTAGATGTTAATGTTTGGGTATTTTTTCAATTTAGTTCATTTTTTTTTCTTTTACATACTTCCAATTTATTTTTTGGTGAATTTTAGAGTTTCCTATCGATAAATTTACACGAACATAACATGTAATGAACTGAGGAAAATTTAGAGGGGAAAAGATGTCATCTAATATAAGAAAACCTAAACTTCTATCAATTCTAAGAATTTGTTGCTTTCCTCACATTTCTCCCTCTAAATTTTGCCAGTTTGCTTATTGATTTGTTTCTTTTTTGGAAGCTTTGAAGTCTCTTTGGTTTGGATTTGGAATAGTCCGCCGTTTAGAGTGAAGGGCCATATTTTATGAACCACTTGTTTCTTCACTAATGTTTGAGAGATTTGGATTGAGAGGAGTCATAGAATTTTAAGTGAGGGTAAGAGATTTGTGGGGGAGTTGTGGGAAACTACTAGGTTCAATTCCTCTGTTTAGGCCTCGATGCCTAAGGTTTCTGATGCTACCCTTTCTTGTTCTTGCAATTGAGCTGTTTTACCGATTTTATTATTAGTTATTATTTGATTACTTAAATATTTCAGTTATTTGTTATTTTATGTGGGTCACCAATAATGCTGAAGTACTCTAGGAAGGGTAAAAAGGGAAGTCCAGAATGAAAGTTAGTTAGTATGGGGATTGAGACCACTGAGAGAATGTGTGGGAGTGAGTGTGGTCAGTATTTGTAATAAAGAGTAGTTGTTGGTAGGGTTGTGCTTTCTGGTGATAGGGAAGTGGTCAAGAGGAGGGAGAGAACTAACTCTTTGTAATCGGCTGGAGTGTGAAGCATTAGGTCCATCTTTTGATTATCGCATACTAGTAATAGTAAGGGAATGCTTTACATCTTATTAGCCAACAAATTGGTTGTTAGGTTGATAGACTTATGCCTACTATTATAAATGTTAGTATTCTTTCTGTATTTTGGACCATTATGAAATAAAGAATAACTTTACTCCTTGGTATACACCAAAGTTGGTATTGGAGATTTCATTTCTCTGGACCAAACACCAAATTATATCCTCCAAATCTTCAATGGAACACTTGATGTCATTTGCACATCGTTTGGGGAATTTATAGACTCTAGTGTAGGAGAAATGAGTCTCTTGACAACTAGAACAACTAATGGTGCCTAAAAACTAAAATCAAGAGAATATCAACACTAGACAAAGTGTTAGGAATGGAGAAAACTGAAGGGAAAAAATACCACATGTTGAAAAGTCCCCATCTCCAAATAACCTAAGAAACCATAATCATAAACATGAGAATTAAGAACTTTGAGAAAAGATCAAGATTATGGATTCTCAAGTGTGGAAGGAAGACTTTTCCTATGGGAATCAAGTAGAAGGTTTAAGATATTCTCATTAAGAACATGACAATGTAACCCTGAAAAAATAGAACTTTAAGTGTTTTCTTGATTGGTTAAAAAATGTGGATTTTTTTGTACACAAATACCCCCTAACCAACCAGAAAATCAGACTGGTAAACTTGAAATTATGCAAAGCTGCTAGTGCTTGGTGCAATCCATTCAAACTGAAAAAAGGAGTGACAATGAAAATATAAGGACAAAAACCTAAAACCTTCAATCAAGCATTCTTTTAGTTCTTATAGCTGGTTAGGAATTTGTGCATTCTCCACCTTAACTCTATGCACGACGTCCCATCACTCTTTTTAGTCCTAGCAATCTTTAGATTTGCCTTGCTCCTGCTGGTTCAGTTGCTGCCCAGTGGGACGATGACACGAACTCTTGGTCTATAGTGTTTCGAAGATTGCTGGAAGATGATGAAATCCAAGACTTCCAATGTTTTCTACTCCTCTTTTCAAAGAGAGTGTCAGAATTGGTAGACAGGAGAGTATGGTCATTAGATGGCTAGGGGCTAGGGCAGATTCTCTGTTAAATCCCACTTGACCTACCTCTCCCCATCTACCCTGTTGGTCTATAGTGCATTAATGATGGTGTTAATGGTACCTTTGATCCCAAGGGTGCAATAACTTGCCTTACCAACTTAATATGGTCTCTACTCTCGTACCAAAACATTCCTTAAAACCATAAAAAACGTTTTAATCTTGGGCTCATGGCATTTATAACTACATGTACTTATATCAACATGTAAACTGTTAACTAACTTTCAGAGGATACACCTTTTAAGCATTTCTACCATTAACTTTCACTATATTGGGTATCTATTAGATAAATCGGCAGGGAAAGGGTGGAATTCGGGAACCCTAAGAATTGTTATTACTAGTGAAAAGGGCTTTTTTAGTGACATTTCATATTCCAACAACAATTTAGGTCTCGCAAATATAAGACTATTCAAATCAGTGCATTGAGTGTAGTTCATGAGGAAAAAGATGAGCTTTTGAGGAGAATCTTGTCTTTGGTTTCAAACTGGAGCTTTGTGAATTTTATTGATTCACTCAAGGTCTTCGTAATAGTGATGGGATCACTAGTAATTGAGATTCCAGTTTATGTAGCTTTGGTTTATTTTTTCTTTTCTTGAAGTGGTAATTCCATTCCATGCAAGTTTTCTTTAGGTATAGCTTCCTATTTTCTCAAGGCATCTGTTTTTCCCTGTCAATTTTCTACATGCAAGATATGGTATAAGAAACAATTTCACTGCTACAATAAAATTATATAAGTGGGGGAGGAAAGCTGGCCATTAGCTAAGGGAGATTAGCTCTTCTGCACAGAGCCTTTATAATTTTCTTGCTGTCCCCATTAGATAAGCTGTTTTCCAAGGCCTTATGGAAGACGAAAAGCCCACGATCGGTTAGTATCCTTGTGTAGATTATGGTTTTTGGTCAGCTAAACTGCTCCTCGGTCATGCAAAGGAAGCTCCCCTTCCCACTGGTTGCCTTCATCTATTTGCCCACTTTGTGAAGCAGAAGGTGAAGATTTTCAGCACCTATTCTTTGATTGCTCTTATGCTGGCTGATGCTGGCCGATGCTGGCAGAGGTTATTTTCATTCTTTAAAGTCGCTTGGGTGTTTGGTGATACTTTTCGTGCCAGCTTTGAAAATGGGCCCTCGTTTGATTTGGACTAATGCGGTTAAGGCAATGATCGCTGAAATTAGGTTTGAAAGAAATCAAAGGGGATTCTATGACAAAAGACTTGGGTGGGTGGATCATTGTGAATTGGCTCCCCTGAATGCTTCATCTTGGTGCATCTCATCCAAGACTTTTGAAGACTTCTCCATTCAAGACTTATGATTAAATTAGCATGCTTTTATTTCCCTAGCTTAAGATTGTAATTGTGTTATATTGATCTCTTGACTGTTTATGCTTTTTGTCCTTCATTATGTTTGGACTGCTTTTGTTTTGATTATTTATGGATATGATGAGGGTCCTAAGTGGGTGTCAACCTAGTTGAGATTCCTAGGTGCATCTCCTAATCCCGCGGCTATCTTCGCTCTTTGTTTCTCTCTTGTACTTTGAGTAATAATTTTATTTCATTATTTCAATGTAGAGGCTTGTTTCCATTAAAATAATAATAATAATTATTATTATTGAAAGGAGTGTTTGCAATTTAATTACTGAAAGAAGCTTAAATTTGTACCAAGTAAAACCCACAAAACTGTGAGTATTTATGAAACAATCCAAGAGATTTTCTTTGTTGTTGAAGACTCCATTTTTGCTTTATTTTCTTCAAAATGATGCATTATGATATTTTCTCCCTTGTACGCTCAGTTTAACCGATAGTTCCTTTTATTTGTTTTTTAGATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGTATGCAACTTTTGGTAGTTTATAACTCAGCGTTGCTTTTTAAACTAGAATAGAAATTAATTACGGATTCTCTTCTTTATAGCTCATGATTTTGGAATGGTTCTAGAATATAATGGATCTGAACAAGTGATGTATAGAGTGAGTTGCATACATTAGCTTTACTTTGAGCCCAAAACATAATAATATCTTTATTTTTTTTTTCTTAGTATTCGAAGAAATACAACTCTTGTTTTTCAATATTTTCATATAAATATTTTCAAGCAATTAATTAATTATGTACATTTTCCAAACCTCTTTGATTATATATATTTTTTTGCTTGTCTGCAATCAAAGTTTCTTGTGGATATCATTTCATTCTAATCTTGTTGAGAGGCATGTCTTAAAAATTAACAACTTTTCTTATTAGTTGTAATGCAAATATAATACGTATAAGGAGTAAGGAATGGTTTTTTTAAAATATGAACGAGAGGCCTTCTTTTGTATAGTTGGAGTCCCTTTTGGTAGAAGAGTTTATCTTTTTTGTGGGCCTGGTTCTTTCGTATGCCATGCTTGTATTCGTTCATCCAATACAAATATGAAGTAAAAAACAGTCATTACCCTTAACTCTGGTCGTTTCATTTCAGTAAGTCATGACATTGTTATTATTCAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGGTAATTCCCCAAGTTTCTGAATATATTTCTCTTTATGAGTTAACATCGATTGATGGAACAAAATCCTGATTCAATTCTTTTGACATTTGGATGATGTGACATGATCTGTAGGTAGTTGGACATATTAGATTTCATTGACCAAGTGATTGGCTCAAACTATATTTGATAATCTCCTTACTAACCGACTACATTGTCTAACAATTAATAGGTAGAGTTGACAAGTATATCCTAACCATCTTTTCCTGAATTACTTAGATGATGCATTTTGTACGATGTCTAAAGAATTCCAGAATTTAGCTGAAAAACAATGTCACTCGATCGTTGATTGCCATCCTCTTTCATTTATGTGGACCTGATAGAGTTCAAAGTAGGCCATGAACTAAATTAAAATCGTTCTCAAGATGTAATATTCAGGTAAAGATAAAAGTATTGAAAATTTGACCGTGAAGTCATGAGTGCACTAAAAAAGTGAAAGTCCTCTAAAACTCCTCCCAAACTAACTTAAATCACCTGTGTTTATTTAAAACTCCTTCCAAGAGCACGTTTAATAATGTTTTTTTTCTTTCTTGTTTCTCATTTCGTTTCCGTCTCTCATTCCCAAACTTCAAGGAACGTTTCTAATCGTTAGACCAAATTTGAAAAACTATTCAGTTCTGGGTCCATTTTATTTAATATTGTTTCTAATGTGTACCAAGGTCTTAGGCTAGCTCATTGATGTGGGCAACATGCCTTGGATGATATATGGCTTTCACGTCTTGGGCTCTTCCCCACCTAAGATAGTTTTATTTTATTTCTTTATATATATATATATATTTCTTAATTTGTTTTTATTTTATTTTATTTTTTTATATTTCTTAATTTATAATTTTTATATTTCTTAATTTGTTTTTATTTTATTTCTTGATTTGTTTTATTTTTTTCCTTCATTTATTTATTTTTCATATTAATATATTTAATTTAATTTTCAATATTCAGATTGATGTATTATTTGATTTTCAAATACGTTTTCTATTTAGCTATATTTTTCTTTTTATATTTATTTATTTATTCGTACATACATATATGTTTAATCTAATTTTGAAATTTTCAGTATATATATTATTTTGATCTTCAATTTTAAAATTTTTAATATCTATATTTTAATATTTTGTAAAATTTGCTAATTTTGGAAATTTTCCTTAATATTTATATATTTAAATTTTTAAAAGTTTCAATAGACATGTTTATAAGTTATTTTAAATAAATATAATAATATAATTGAGTTAAATTTGAATTAATATTATTTAAGAGGAAATGAATTGAGTGAAAAATAATATTTCAGATCACACTTTAGTATATGAATGATAAAAACAATTGTATTGTAGTTATTAATTTTGTATCAAAATTGATGTGTATTTGATATTGCCAATGGTTAATAATTGTTTTCTATAATTTAATAACTACTATGTATTTTTTACTTTACATAATTAAATTATATTTAAACTATAAATATAAGAGAGAATGTTGGAGAAAGTAATACAAAAGAATGAGAAACAAGAAATGATAGTCAAAAATTACTTTTTTTTTTGTTTCGAAAAACAAGAAACATAAGTAGTCATCAAATATATTTCTGTTTTTAATTTTTTAAAATTTAAGAAACAAAAAATAAAAAATTAGAAACAAGAAACAAAAAAAACTAAAAATGGAAACGCTATTAAGTAGACTCTTGCACTTGCATACTAAGTTAAAACTAATATGCACGCCAGTTCTACGTTTTCCTTTAATTACTTCAATTTGATGTATCTAAGTCTTACAGGTGAAGATATATACAACACTTCTGTTGTCGATTTGCTTGGCCCCTTTTTCGTTATTGGAAGTTGCAACCCTTTGAGGATACGAACTGTAACCATTAAGCTTTCCATGTGGTTGAATTTGCAAAAAGAAGCTTGTCAAATATGCTTAAAATGTATCGTACGCCTATTTATTCTATCATTTTGTGTATTTAATCGTCTTGCCAATTCATGTTCGGCTTGGTATTTGTTAGTAAAAGTTGATTCAGTTATTTAAAACTCCCAAGGCTACCAAACAACCACAATAGGATTGTAGATTAAAGATC

Coding sequence (CDS)

ATGGAGTCGGAGGTGATAGAAGCGGAGTTAGTGTTGCCGATCCACCTGAATTTCAAACGAATTCAAATGTACGAGAAGTATCCTAAAGGCCAATCTAGAGGCAGGCACTGGAAACATTTGAAGCAGATTCTTCAAGCCGAGAACTATCACAATTACTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAGAATTTGTGATATAACAGGATATGAGGCACCATACTATGATCCTAGGACTACTCTTCGATATGCAAATGCTGATATTTTCAAGGTCATAAGATCACTTCCTAATGAGTACGTCCAGAGGTATTTGGCCATGAGAAATGCAGCGGTAGTTTTAAGGTGA

Protein sequence

MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR
Homology
[Close]
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match: Q8BHA0 (INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-15
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  DI+G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDISGLLANYTDPQSKLR 159

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190

[Close]
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match: Q6PI98 (INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-14
Identity = 37/91 (40.66%), Postives = 59/91 (64.84%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL +E    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 160

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YLA+R A  ++
Sbjct: 161 FSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191

[Close]
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match: Q5BJY3 (INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.9e-14
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 33  RGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDPRTTLR 92
           + R WK+LKQIL AE    +  ++PNY +I++PPS  P K+  D++G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 159

Query: 93  YANADIFKVIRSLPNEYVQRYLAMRNAAVVL 124
           ++  + F  IR LP++ V  YL +R A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190

[Close]
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match: Q9UTE8 (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ies6 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-13
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 0 

Query: 28  PKGQSRGRHWKHLKQILQAENYHNYSPDEPNYVNIESPPSMHPCKRICDITGYEAPYYDP 87
           P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  + CD+TG  A Y DP
Sbjct: 22  PNYKAQPRRNRNLRQIIQNDPVQN-EPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDP 81

Query: 88  RTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVVLR 125
           +T LRY N +I+ +IR LP+   Q YL +R++ VVL+
Sbjct: 82  KTRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117

[Close]
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match: P32617 (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=IES6 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 0 

Query: 59  YVNIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMR 118
           Y ++E+PPS+ P K+ CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R
Sbjct: 100 YFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLR 159

Query: 119 NAAVVLR 125
            A  VL+
Sbjct: 160 GANFVLK 166

[Close]
BLAST of Cucsat.G8641 vs. NCBI nr
Match: XP_004152811.1 (INO80 complex subunit C isoform X2 [Cucumis sativus] >XP_011649021.1 INO80 complex subunit C isoform X3 [Cucumis sativus] >XP_031736377.1 INO80 complex subunit C isoform X4 [Cucumis sativus] >KGN61299.1 hypothetical protein Csa_006441 [Cucumis sativus])

HSP 1 Score: 261 bits (667), Expect = 4.67e-88
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. NCBI nr
Match: XP_031736376.1 (INO80 complex subunit C isoform X1 [Cucumis sativus])

HSP 1 Score: 261 bits (667), Expect = 1.12e-87
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. NCBI nr
Match: XP_038889510.1 (INO80 complex subunit C isoform X1 [Benincasa hispida] >XP_038889511.1 INO80 complex subunit C isoform X2 [Benincasa hispida])

HSP 1 Score: 259 bits (662), Expect = 2.70e-87
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. NCBI nr
Match: XP_008441777.1 (PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PREDICTED: INO80 complex subunit C isoform X2 [Cucumis melo])

HSP 1 Score: 256 bits (655), Expect = 3.16e-86
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYV
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. NCBI nr
Match: XP_022144563.1 (INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144565.1 INO80 complex subunit C isoform X2 [Momordica charantia])

HSP 1 Score: 253 bits (647), Expect = 5.26e-85
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           V+LR
Sbjct: 121 VILR 124

[Close]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match: A0A0A0LJN6 (YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 SV=1)

HSP 1 Score: 261 bits (667), Expect = 2.26e-88
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV
Sbjct: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match: A0A1S3B479 (INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 SV=1)

HSP 1 Score: 256 bits (655), Expect = 1.53e-86
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+NYSPDEPNYV
Sbjct: 1   MEPEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYNNYSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match: A0A6J1CRZ9 (INO80 complex subunit C isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014214 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 2.54e-85
Identity = 118/124 (95.16%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN+SPDEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNHSPDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANAD+FKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADVFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           V+LR
Sbjct: 121 VILR 124

[Close]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match: A0A6J1HLV4 (INO80 complex subunit C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465726 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.62e-85
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

[Close]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match: A0A6J1FBP9 (INO80 complex subunit C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444164 PE=4 SV=1)

HSP 1 Score: 253 bits (646), Expect = 3.62e-85
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 0 

Query: 1   MESEVIEAELVLPIHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSPDEPNYV 60
           ME EVIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYS DEPNYV
Sbjct: 1   MEPEVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNYSSDEPNYV 60

Query: 61  NIESPPSMHPCKRICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120
           NIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA
Sbjct: 61  NIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAA 120

Query: 121 VVLR 124
           VVLR
Sbjct: 121 VVLR 124

The following BLAST results are available for this feature:
BLAST of Cucsat.G8641 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8BHA05.1e-1542.86INO80 complex subunit C OS=Mus musculus OX=10090 GN=Ino80c PE=1 SV=1[more]
Q6PI981.9e-1440.66INO80 complex subunit C OS=Homo sapiens OX=9606 GN=INO80C PE=1 SV=1[more]
Q5BJY31.9e-1440.66INO80 complex subunit C OS=Rattus norvegicus OX=10116 GN=Ino80c PE=2 SV=1[more]
Q9UTE81.6e-1341.24Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 9... [more]
P326171.0e-0737.31Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain AT... [more]
BLAST of Cucsat.G8641 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004152811.14.67e-88100.00INO80 complex subunit C isoform X2 [Cucumis sativus] >XP_011649021.1 INO80 compl... [more]
XP_031736376.11.12e-87100.00INO80 complex subunit C isoform X1 [Cucumis sativus][more]
XP_038889510.12.70e-8799.19INO80 complex subunit C isoform X1 [Benincasa hispida] >XP_038889511.1 INO80 com... [more]
XP_008441777.13.16e-8698.39PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo] >XP_008441778.1 PRE... [more]
XP_022144563.15.26e-8595.16INO80 complex subunit C isoform X1 [Momordica charantia] >XP_022144564.1 INO80 c... [more]
BLAST of Cucsat.G8641 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJN62.26e-88100.00YL1_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G077540 PE=4 ... [more]
A0A1S3B4791.53e-8698.39INO80 complex subunit C isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485837 PE=4 ... [more]
A0A6J1CRZ92.54e-8595.16INO80 complex subunit C isoform X1 OS=Momordica charantia OX=3673 GN=LOC11101421... [more]
A0A6J1HLV43.62e-8596.77INO80 complex subunit C isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465726 P... [more]
A0A6J1FBP93.62e-8596.77INO80 complex subunit C isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111444164... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013272Vps72/YL1, C-terminalSMARTSM00993YL1_C_2coord: 73..102
e-value: 2.1E-12
score: 57.2
IPR013272Vps72/YL1, C-terminalPFAMPF08265YL1_Ccoord: 74..102
e-value: 3.0E-14
score: 52.5
IPR029525INO80 complex, subunit Ies6PANTHERPTHR31200INO80 COMPLEX SUBUNIT Ccoord: 2..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G8641.T1Cucsat.G8641.T1mRNA
Cucsat.G8641.T5Cucsat.G8641.T5mRNA
Cucsat.G8641.T2Cucsat.G8641.T2mRNA
Cucsat.G8641.T4Cucsat.G8641.T4mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006338 chromatin remodeling
cellular_component GO:0005737 cytoplasm
cellular_component GO:0031011 Ino80 complex