Cucsat.G8475 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8475
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	TMV resistance protein N-like
Location	ctg1557: 2888424 .. 2895752 (-)
RNA-Seq Expression	Cucsat.G8475
Synteny	Cucsat.G8475

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAACTTTTTCTAACTTTCATAAATCAATTCACATATAACTTATTTGTTTAAAGCAAATGTATGCTTAATTTCAGATCTCAATCTCATCATCTTTGTGTCTCCCCATTTCAGGTTCCAGCTCGCATCCGCCCATCTCCCCCAATGTCCCTTCTGCCAGCCGCAGTGACTCCAACGCACAACCACCGTCGTCCGCCTCTGCCTCATCTTCCTTCTCACCACCACAATGACTCCAACACACAACTTCCATCGTTCATCTATCTCTCCATCGCCACTCCGTCTGCCACACACATTTCAACCATCGCCTATCGTCGTTGTTTAGCCTGCCGCACCCAGTCCACGGTCTCTCTTTCTCTTCACTTCGTGAAGTCCTCTTTATTGGTAAACAATTTTGCTCTTGTTTTATTTGGTTTATAATGATTTGAATTTGAAATTTGTTGTATTTCATTTTTCTAAAAGAAATTTTATATACATCAACGATTTCTGATGTAGATTGTGTTCAATTTGAATTAGGACTAAGACATAAATTAAAGCATTATGTATAGCTTATAATTAATATAGATATGGTGAATGAGTTTGTATGCTTTGGTGGATTTGTATGGTTGAATTAGTTTATGAAGGCCTAGACTTGAATGATGTATGCTTTTGATTGATGATATTGCTTGAATGAGCATGTTATTGTTGTTACCTTTACACATCCGAGGGCCAGACCGTAACGACGATAATAGTAAATATGTCGCCAATGTTTATAATTTTTTATTTAAAACAGTAACTATAATGGTAACCATAATTATACCAATGTTAATGATAATGATACGAACACAATTGGATTAGTTCATGCTTTGCTTGTCAATCAAATTTGTGTCTTTTGTTTATAGATTTGGAAGTGTACCCCATATGTCATATGTCAGTACCAAGGCAATACACAAGTAAACAACACCAAATGTAATCAAAGGATGCCCACTTTTCAAATTATCATAGAGTTAATAATTACCAGCGGACTAGGGTAAACATGGCCTTAATTACTCCTTATAGTTTCATAGAAGCTCTTAAATAGTCCATATGATATACAATAAAATCTTCATAAATAGTATTTGTTTTATCTAACTACTCTCTGGAAACGTATTATCATTGCAAAATACGAACAATCATACTTGGGTGAGCTTCCAACTAAGAGCAAATATAGCAGCTCAAAAGCTTCATGGATGTCTATCATTAAAGGAGTTGACTAGGTTCTTCCTCAGATTAAATGGAGCATTAGAAGGGGTGACTCCCTCTCATTCTGGCACAGCCGTTGGCATGAACTTAGTCCGTTCACGCAGAGCAACCCGAGATTATTTGCTCTTTCTTCCAGAAAAGAAAACTCCATTGCAAACATGTGGAACGCAGAAACAGCTGATCATTGGGACCTTTATCCTTGTGGACCATTAAGAAGTGTCGAGGAAGCTCTTTGGGACGATATGAAAGCATTCCTCCCTCCCTTGCCTGGTTCTGGTTTCGACAGACCTCATTGGATTTTAAACAGTAATGACAACTTCTAGGTGGCTTCCATTAAACTTGCGAGACCTCATAACAACCAAGATGAGATTAATGATAATAATGGGGTTATTTATAACAACTTATGGAAATCAACCATCTCCAAAAGATGCAAATTCTTTTTATGGACTCTCCTTCGTGAGTGTATCAATACCATGGATATGCTACAAAGAAGACTCCCAACTTGGAATATAAATCTCTCTTGGTGTATTCTCTTCAAAGCTGCTGAAGAAGACAAATATCACTTGTTCTCCCTCTGCCCCTTCTCAACAAACCTTTGAAAAAATGTTGAAGTTGTATTGGACAAACCCCTTCTCCTTTCAAATTCCTCTATCTTATGCAAAGAAACCTTCAAAACAAAAAAAAAACAAACCATCAAATAACACCTGGTGGCTGCTACCCTTTGGAATATCTGGAGTGAAAGAAACAAAAGGATTTTTAAGGGAAAGAAAAAACAGTTGATTCAGTATGGGAAGACATTCAAGCTATAACTGGTCTCTGGACAAGTCGTTCTTCCCTTTTCAAAAATTACTCGTCCAGTTCTATTGCTTTAAATTTACATGCTTTCTAGCAAATCGGGTTTATAGGGCTGCCCTCTAGCCCTTTTTGTATCTTCTACTTCTTGTTCATATCTCTTTATTATTAATGAAGTGGGTTTGATGTGGATGCATTGGTATATTTTCCTTGTGGAGATATCCTTTTGCATTTGCTATCCCAAAGTATCTTTATCAAAAAAAAAAAAAAAAAAAAACTATGTAGACTAAATTATAATTAAAAACTACTGAGAGAAAATTATAATTATAACAATTCAAACAAGCTAAAGAATACTAGTAAGGGATAAAATTGTTCGTAGATTAAAATATACATTAAATTCAGGATCTTCATAAGCTATCATGCATTGGCCTAATAGTAGAGAAAGAGACCGTCTTAATCAGAACTAACTTAGAGATCATGAGTTCTAGGGAGAAATCATTGACATAAGATTGATCTCCGATAAAGAAGAAAACAATATAAACAAAGTTTAGATTAGAATTAATAACAAAAATTAAAATACATATAAACATAAATAACTAAAGAAACAACTTTTCCCAACATTTTCAAGACTCATGAGTCCATTACCAAAAGGTAAAAATAAAAAAAATAAAGAACCATTTCTCACTATTTCTCAACTCACATCCAAAGACAAAGAAAAAACCTTCTCTCCTCTCACATTCAAAACAACAAATAGTCTCTATTGTTTGATAAAATTATCATGTCTTTGTTTTATGAAACTATAGGAACAAAATTCCAACGAAAGACGGTTGGGACAACATTCTAATCATCTGCGAGAGTAAAGAACTAGATTTGGCCTAATGTTGGTGTAATTTTCTTCTGATTTCTCTGCAATATTGTATCAAAGAAATTTGTTCCACTTCATCTAGTCTCTTCCATGTTTCATTCCATACATCCAAGTCCTTATTATGCAAATAGGAACCAATGGTTCTCAAAGCTAATGGAAGTCTTTCAACCTTTTCCACAATTTCACTACAAAGATCCTTTTTATCAGATGGGCCGCCATCTCCAAATGCATTCTCGCAAAACAGTGAGTAAGCTCTCTCACGAGAAAGTAACTCCACCTTGTATTCTTGCACTTGATCTCTATAATTGAGTTCATGCAGAACATCTCTATTTCTAGCTGTAATAATAACTCTGCTTCCAGGTGCAAACCAGTTCGGACTTCCAACTAACCTTTGAATTTGGTTTCTTTCATGAACTCCATCAAGAACAATATATAACAACTTTTCTATTACTCATGTGATGCTTAATCAGTTGTGCTCCATGATCTTCATCCCAGATTTTAGTTTCTTTTGATTGAAGATGAGAAAGCATTTGATGCTGAAGTGGGACTGAACTGTTTTGCTTTGAAGAAAGGTAGAGAAAATAACCACTTTGGAATTCATCTACAATTGTGTTGTAAACAACTTCAGCAATGGTTGTTTTACCAATGCCACTTGACCCAAAAATCCCCACAAAAAGTATGTTCTTGGATCGTTCTAAATCTAGGAGATTACAAGCTTTCTCCACTTGATTCTCCATTCCAACTAAACTAGTTTTGTGAGCAAGTACTAGCTTATGATTAGTCTGCTTCCCCATATCCTTCGTAATATGCACTTCTTTAGTGCTGCAAGATCAAAGTATTTCAAAGTTAATTAGATCGACAGTAGAATGCTGTAAGTACCAGTTGGATTCACGCTTTTGAAGAATTCAATCAAATATATCATTATTAATGGGAAGGATAATGGAAAAAGATATGTTTTGTTGAAGTGTTGATATAACTCAATTTACCATCACCCATTAGCTTAAGCTTTAGGTTAATTATTCATTTAACATGATAACATAGCAGGAGAGGAGATCTTGTGTTCAAACCTCTATAATAATATCATTTTTCTCTATTTAATATTGATTTCCAATAGATTTTTTATGTACTCTACCTGTACTCTTGAAATCGTAGGAACTTGACCTTCTTTTTCAACAGACGAGCATTAGATGGAGGTGACATCACTGACATCGTGCATGCAAGGGAACCAGTCATGAAATAAAACTAATTAATAATAATGTTGTGGAATTGTTGTGGAATTGGAAACAGCCAACAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAAGCACTTTGCCTTCAAAATTTCTTAACCTCCCCTTGGACTTTTCTCCTTCCACATATTTTGTACTTTTCAACAGACGAGCATCAGATTGTGAAGGTGACATCTCTGACCTGGTGCATGCAGTAGAACCTGTCATGAAATAAAACTAATTAATAATGTTGTGGAATTGGAAACACCCAAGAGAGAGAGAGAGACAAAAAAAAAAAGAAAAATAAATAAAAAGATGAAGAAGAAGAAAGAAAAGCACTTTGCCTTCAGAAGTTCTTAACATGCCCAAGGACTTCTCTCCTTCCACATATTTTGTACTTTTTGGAAGCTTCGGTACTCGCTTTAGCTCGGGGCAATCATTCAAGTAAAATGCTTTAAGGTTAATAAGTTGTTCAATGCTTTCTGACAGTTTTTCAAAATGATTGCTGCTAAGATCTAGAATTTCCAATGAGGAAAAGAGTTTAAGATCATTAGGAATGTCTTCGTCCACCAGATTACAATCACTTAAATTTAAATCTCTGCGTGAACTAAAATAATTTGCTGGCAAACTAGCTAAAGAATGCCAAATATTGCTTTTCAGCCTTTCACAGTTCAAAATTCTTAGATTTTCCAAGAAAGGAATAATGCTTATGGATGTTCCCCCAATGTCAAGCTCCTCGAGAGGCTTTACATTCCCCAAACTTGATGGAATTTTGTCCAAGTTTTTGCAACCATTAAGAATGAGAGTTTTAAGTGAACTCAAGCTACCAATTTCAGTTGGAAGACAAGGAAGTCTAATACAATTCCTCAGGTTCAATAAAATCAAGCTAAATAGATTTGTAATTGAGATAGAGAGTTCATTTATGAAAGTTCCATCAATGTGTAGTTCAGTCAAATATCCCATCAGACATCCAAACTCTTGAAAAAACTCTAGACCGCAGTTAGAAAGAACTAAAGTTTCAAGACTTTCGCAAGTGATAGCAAATGAGAAGCTTCTGAAACTGACACAACCCTCCATATCCAATAAAATTAGATGAAGGAGACTATTTATTGAATCATGAACCTCTTGTAGTGTTTCACAATTCCGTAAAATCAATCTTTGAAGATTTAGAACCTCTGAAAAATCAGGAGTCTCAACCAAATGCTTTGAATCACTTACATCAATCTCCTTCAAGTTCTTAAATAATTTCTGTTGCAAAACAAATCAATTGTATCTACTCTGTTAGACATTAATTTTGTAATGCAGACATATAATAATTTATTGTGTATATATAGTTCAAATAAGATTCAGTTTTGTTATGATGGAAACAAACTGATTTGCAAAGAAGAATTCGACTTAGAGATTTATGTTGATCAGTTGTGTGTTAATCACGTCCACGGACTGATAGTGAATCAGTTCTATTATCTTTCAGGTGAAGAAAGATGTGGAATACATAACAATATGAAAAGAAACATAGAAGTAGGATTTCATCCTAGTGCTTTCAGACATCAGAACTCGTGAGTCTAGAAACGCTTCAATGCCACACATGCATGAGATGACTTGCGCCACTTTAGCAGCCAACTCATAAAGATTACAGATTAAGTGTTAAGTTTCTAGCAGTTAGCATGCTAAATGATTTGTTTTGCCCCTTCTAATAGTTCAAACCAGCTAAAGAATACCAAGTAAGAGATAAAAGTTGTTCATAGATTGAAATATGCATTAAATTCAGGATCTTAACAAACTATATCATGCATTGGCCTGGTGGTAAAAAAAGAGATATAGTCTCAATAACTAACTAAGAGGTCACGAGTTTAATCTATAATGTTTACCTATTAAAGCAAGGTTTCTAGAGTTTGTCTTATTCAACCACCACCTCTTTGTCTCTGCTTATAACAACACTAAAGACTACGTTATTAGCAAAGACATACCCCAAATCCGCATACATTTGTTGCCTAAATTAGATCAGATCCATCCATTAAGTTTTTGCTCTTATGTAGAACAAATTGGCCATCGACAAGGCCCATTGCAGCCTAGCTGTCTCCATCACAACATGTACATCAATTTGGGTCAAGTCTTCTACATTCCGCCTGGACACTCACAGATATTCAAGAAAAAAAACTCAAGGTGCTTACATAATTGCTAGTGGGTTCTTTTTTTTAAAAAAAAAAACATACAAACGGTTATTCAGTAGGTGCACTCAAGGATGGACACCCTTTTAACACCCTCATCATACCTCATATATATTCATTAATGTGAAGGGGTACAACTACAAACCAACTCAATTTGAATCTAAAAAGCCTTGACAATGGAATCAAACCACAAACTTTGAACTAAATCAGCATGATTTCTTTGTCAGCTTCAGACCCAAAACATATAAAACCTCAAACCAACATATTCTAAAAGCATAATAAAGAGCTAAAAGCATAATAAAGAGCACGATCAACCCAAAATTAAATCACATTCTTCAGCTATGGAACTCAAATGAGCTGAAATTTCAGAATGAGGCAAAGAAGATAATCTACAATAAAAAACCGGCAACTTCTGCATTTAAATTATGGTTAAGTTACAAATATGATCCATGCACTCCTCGGACAAAGTTAGAATTTAGTTTTTATAATTTAATATCTCATGAAATAATGCATATGATATAATAAAATTCTATTTCTTACAAATAGTCTTCTTTTATCAAACTAAAGAGGCTAAATTCAAATTGAAAATAAAAATTGTGCGGACAGAATTCTAAGTATCATCCAACTCAATCAATGGCATAAAAGAGAACACAATTATATTATTAATAACACATATACCTATTCCACTGGTATGTTGGATCTTGAGTATTATTAGTGTAAATTCTTCTGACTTTTCTGCAATACTGTATCACAGAAGTCTTGCTCCACTCCATCTAGTCTCTTCAATGTTTCATTCCACACATCCAACTCCTTATTATGCAAATAGGAGCCAATGGTTTTCAAAGCTAATGGAAGTCTTCCAACCTTTTCCACAATTTCATTACAAAGTTCATCTTTATCGGAAGGGCCACCTCCAAATGCATTCTTGCTAAACAGTGAGTAAGCACTTTCACGAGAAAGTAACTCCACCTTGTATTCTAGCACTTTATCTCTATAATTTAGTTGATGAAGTACATCTCTCTTTTTAGTTGTAATAAGACTTCCAATTGAT

Coding sequence (CDS)

ATGCTTAATTTCAGATCTCAATCTCATCATCTTTGTGTCTCCCCATTTCAGGTTCCAGCTCGCATCCGCCCATCTCCCCCAATGTCCCTTCTGCCAGCCGCAGTGACTCCAACGCACAACCACCGTCGTCCGCCTCTGCCTCATCTTCCTTCTCACCACCACAATGACTCCAACACACAACTTCCATCGTTCATCTATCTCTCCATCGCCACTCCGTCTGCCACACACATTTCAACCATCGCCTATCGTCGTTGTTTAGCCTGCCGCACCCAGTCCACGGTCTCTCTTTCTCTTCACTTCGTGAAGTCCTCTTTATTGAAGTCTTGCTCCACTCCATCTAGTCTCTTCAATGTTTCATTCCACACATCCAACTCCTTATTATGCAAATAG

Protein sequence

MLNFRSQSHHLCVSPFQVPARIRPSPPMSLLPAAVTPTHNHRRPPLPHLPSHHHNDSNTQLPSFIYLSIATPSATHISTIAYRRCLACRTQSTVSLSLHFVKSSLLKSCSTPSSLFNVSFHTSNSLLCK

Homology

[Close]

BLAST of Cucsat.G8475 vs. NCBI nr
Match: KAA0039322.1 (TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK00505.1 TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 7.48e-21
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 18  VPARIRPSPPMSLLPAAVTPTHNHRRPPLPHLPSHHHNDSNTQLPSFIYLSIATPSATHI 77
           VPARIRPS P+S+ PAAVTPTHNHRRPPLPHLPS  HNDSNTQL S + LSI+TPSA H+
Sbjct: 489 VPARIRPSLPISIPPAAVTPTHNHRRPPLPHLPSCRHNDSNTQLLSSVSLSISTPSAAHV 548

Query: 78  STIA 81
           STIA
Sbjct: 549 STIA 552

[Close]

BLAST of Cucsat.G8475 vs. ExPASy TrEMBL
Match: A0A5D3BN34 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001150 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 3.62e-21
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 18  VPARIRPSPPMSLLPAAVTPTHNHRRPPLPHLPSHHHNDSNTQLPSFIYLSIATPSATHI 77
           VPARIRPS P+S+ PAAVTPTHNHRRPPLPHLPS  HNDSNTQL S + LSI+TPSA H+
Sbjct: 489 VPARIRPSLPISIPPAAVTPTHNHRRPPLPHLPSCRHNDSNTQLLSSVSLSISTPSAAHV 548

Query: 78  STIA 81
           STIA
Sbjct: 549 STIA 552

The following BLAST results are available for this feature:

BLAST of Cucsat.G8475 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G8475 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039322.1	7.48e-21	79.69	TMV resistance protein N-like [Cucumis melo var. makuwa] >TYK00505.1 TMV resista...	[more]

BLAST of Cucsat.G8475 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BN34	3.62e-21	79.69	TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8475.T1	Cucsat.G8475.T1	mRNA
Cucsat.G8475.T3	Cucsat.G8475.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0043531	ADP binding