Cucsat.G8304 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8304
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RING-H2 finger protein ATL46
Location	ctg1557: 4627352 .. 4629669 (+)
RNA-Seq Expression	Cucsat.G8304
Synteny	Cucsat.G8304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAACTTGAATCTACTTCACACCTCTCCTCTCTCCCAACTCTTTTCATACACCACTTTGTCTCTTATGGTTGACCAATCTCTTCTCTCCCACACTCTCCTTGCGCGTGTATCTCACTCCACCTCCTCTTTTCCTTTTCCCTTCTCAGCTCTTTGTCTCAGTGTTACTCTTACGGGGTTCTCCCATTTCTCTCCAAATTTGACTTCAGAGAGAAAAAGGGTCCATCCCCCTAAAAACCCATCTTCTCTCTTCTCCAAACTCCTCTGTTTTAGGGTTTCTTTCTCTTCTTCCACTCAACTTCGTCCTCCTATTTCCAAATCCTTTCTTTTGGGTGTCACATAAGGGCTTCAAATTTTAAATTTACATTAGCGGTGAGGCAGTTTGGTGAGTTCTCAATATTTTATTTATTATTCTTTTCTCCTTCTCATTATTTTTCTAGCATTCCTTTGGCTTTTACTTGGAGGTATTGTCATTTTATTCTCGATTAAAGACGTCGGTTCTGTTGTTTGTGACACTTCTGGTTGCTGCTGCTTCTACTTTTTCCAAATCTGGGGTCAAGAGTTTTGGGGGTTTGTTTGTTTTTGCATTGTTGGAGTTGCACTGATTTTGGAATTCTGAAGGGTGTGGTTTAAGTTTTAGTTGTTTTGATCTGTGGAATGTCAAAAGTGGTTTTTGGAGAAACCCCATTTGAAAAATGGCTCGGATTCGACATCAAATCTTTCAAAATGATGGGTTTTTTAGCTACCCTCCTCCTTTAGCGGCTTCTTCTTCAACCCCTTTTGATGGAATTTACAATAAGGAACCAAACCCACCTGCAGTTCCATCTCCAACCTCGTCTGGCACCAGGATAAGTCCAGCAGTTCTTTTTATCATAGTTATTTTGGCTGTTTTGTTTTTCATTTCTGGTCTCCTTCATCTTCTTGTTAGATTCCTTATAAAACACCCATCTTCTTCAGCTTCTTCTCAATCTAATAGAAACCCTGAACTTTCTCCTTCTGATGCACTTCAGAGACAGCTGCAGCAGCTCTTTCATCTTCATGATTCCGGTTTAGATCAAGCTTTTATAGATGCACTTCCTGTATTTCAGTATAAAGAAATTGTGGGTCTCAAGGAGCCATTTGATTGTGCTGTTTGTTTGTGTGAGTTTTCTGATAAGGACCAACTCAGATTACTTCCTATGTGTAGCCATGCCTTCCATGTCAATTGTATAGACACTTGGCTCTTGTCGAATTCGACGTGTCCTCTTTGTCGTGGAACTCTCTTTAATCCTGGTTTTTCGATTGAAAATCCAATGTACGATTTTGACGATCTGGGTGAAGAAGATGAATGCGCTGGTAATGCAGACCACAGGTTACCTAATTGTCAGAAAACAATGGAAATTCAAGAGGTAGTGAATGAGAAGGGGGTTTTCCCAGTGAGACTAGGGAAATTCCGAAGGATGGATGCAGCGGAGGTGGTAGAGACTGAAGTTGGTGAGACCAGTAGTAGTAATTTGGATGCTAGGAGATGTTATTCGATGGGATCGTATCAATACGTTGTTATAGACGCTGACCTCAGAATTGCGTTATCTAAAGCTCGAGGAGAGGGTGATAATACACAGCCCTCGAAAGAGGCGGAATCAAACAGCATCTCTCCAGTCCAAGCAGATTTGGATGGAAAGAAGCTTAGTAGTGTAGCTAAAGGAGAGAGTTACTCTGTTTCGAAGATCTGGCTTTGGTCGAAAAAGGGGAAGTACTCAGGTTCCACTGAACCCCATATTGGTATGCCTTCTTCTCTAAATACAGACTTGCCGCCATGGTTGAGGCAAACACAAGGGCCATGATAAAAATGGCCTCAAAACTGTTTTTTTTTTTTTTTTCCCTCTTTTCTTTTTTTGTAGTCGAAAATGATCCTTATCAATGTTTGTTGTATCTATTTAGATTTTTGTCTATGAAATTACCTTGGTGCTAACTTGTGAGTTATTTACTATTACAAAAGTGTTAGTATCCGCAATCCAATAGTCTTTCCTCCTACTACTGAAACCAGAAATCATATCCTTTTCTTCTCAACTGTTCTCGACTTTCTGATGATGTGAATATAGGATTTATAGAATAGGAAGAGCAACGATGTCTCGAACGTTAATACGATAGACATGATCCGAAGAAAGTTTGGAGCAATAGATATGAACTCCGCAAGTGTGGTAGATCTCTTGATTCATTTTGATGTTTGTATTTTGAAGGCCTACAAAGGTCATAATACCTGTTCCTTTTCTTTTTCTTGGGTACGTTTCATTTTTTTGTTGATATTTTACTGTCTCTATAATTGATTGTACAGACACAT

Coding sequence (CDS)

ATGTGTAGCCATGCCTTCCATGTCAATTGTATAGACACTTGGCTCTTGTCGAATTCGACGTGTCCTCTTTGTCGTGGAACTCTCTTTAATCCTGGTTTTTCGATTGAAAATCCAATGTACGATTTTGACGATCTGGGTGAAGAAGATGAATGCGCTGGTAATGCAGACCACAGGTTACCTAATTGTCAGAAAACAATGGAAATTCAAGAGGTAGTGAATGAGAAGGGGGTTTTCCCAGTGAGACTAGGGAAATTCCGAAGGATGGATGCAGCGGAGGTGGTAGAGACTGAAGTTGGTGAGACCAGTAGTAGTAATTTGGATGCTAGGAGATGTTATTCGATGGGATCGTATCAATACGTTGTTATAGACGCTGACCTCAGAATTGCGTTATCTAAAGCTCGAGGAGAGGGTGATAATACACAGCCCTCGAAAGAGGCGGAATCAAACAGCATCTCTCCAGTCCAAGCAGATTTGGATGGAAAGAAGCTTAGTAGTGTAGCTAAAGGAGAGAGTTACTCTGTTTCGAAGATCTGGCTTTGGTCGAAAAAGGGGAAGTACTCAGGTTCCACTGAACCCCATATTGGTATGCCTTCTTCTCTAAATACAGACTTGCCGCCATGGTTGAGGCAAACACAAGGGCCATGA

Protein sequence

MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLPNCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYVVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLWSKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP

Homology

[Close]

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot
Match: Q9FL07 (RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-56
Identity = 120/218 (55.05%), Postives = 153/218 (70.18%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFH+NCIDTWL SNSTCPLCRGTLF+PGFS+ENPM+DFDD+ E++E  G  ++   
Sbjct: 161 MCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDEE--GVTEN--- 220

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMD------AAEVVETEVGETSSSNLDARRCYSM 120
             QKTMEIQE+V EKGV PVRLGKF+R+D        +VV    GETSSSNLDARRC+SM
Sbjct: 221 GSQKTMEIQEIVVEKGVLPVRLGKFKRLDNVGNGQGQDVVAG--GETSSSNLDARRCFSM 280

Query: 121 GSYQYVVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSV 180
           GSYQY++ +++L++  +  R      Q  KE+E    S  +   D KK+++VAKGES+SV
Sbjct: 281 GSYQYILGNSELKVPFANDRLPRLKPQ-DKESEQTGNSSSE---DNKKINTVAKGESFSV 340

Query: 181 SKIWLWSKKGKYSGSTEPHIGMPSSLNTDLP--PWLRQ 211
           SKIWLW KK K+S   +  +   S    DLP  PW+ +
Sbjct: 341 SKIWLWPKKDKFSSDAQRRLPSSSLNVDDLPKLPWMEE 367

[Close]

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot
Match: Q8GW38 (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-38
Identity = 94/187 (50.27%), Postives = 117/187 (62.57%), Query Frame = 0


Query: 2   CSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLPN 61
           CSHAFH++CIDTWLLSNSTCPLCRGTLF+ G   E P ++F     +D   G    R+  
Sbjct: 163 CSHAFHIDCIDTWLLSNSTCPLCRGTLFSLGHQFEYPDFNFGFFAGDD---GGGGVRVSP 222

Query: 62  CQKTMEIQEVVNE--KGVFPVRLGKFRR---MDAAEVVETEVGETSSSNLDARRCYSMGS 121
            QK  E     NE  K VF VRLGKFR    ++  EVV    GETSSS+LD RRC+SMGS
Sbjct: 223 VQKPAE-----NEIGKRVFSVRLGKFRSSNIVNNGEVVVGGGGETSSSSLDNRRCFSMGS 282

Query: 122 YQYVVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSK 181
           YQY+V ++DL +AL           P+ E   N+      D++GKK++  +KGES+SVSK
Sbjct: 283 YQYIVAESDLVVALC----------PNNEGLKNN-----KDVEGKKINMRSKGESFSVSK 326

Query: 182 IWLWSKK 184
           IW WS K
Sbjct: 343 IWQWSNK 326

[Close]

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-20
Identity = 80/247 (32.39%), Postives = 111/247 (44.94%), Query Frame = 0


Query: 2   CSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDF------------------- 61
           CSHAFH++CIDTWLLS+STCPLCR +L +   S ++P   F                   
Sbjct: 153 CSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDR 212

Query: 62  ------------------------DDLGEEDECAGNADHRLPNCQKTMEIQEVVNEKGVF 121
                                   +DLG     +G+ D  L       E+   V +   F
Sbjct: 213 DSAACVAANDDIDVSSAHLGLVGNNDLGSTRIDSGHGDQYLDG-----ELGGSVGKVVPF 272

Query: 122 PVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYVV-------IDADLRIALS 181
            V+LGKFR +D  E   +     +SS+LD RRC+SMGSY+Y++       +    +   S
Sbjct: 273 SVKLGKFRNIDIGEGTSSNNNIGNSSSLDERRCFSMGSYEYIMDEETTLKVHVSTKKQSS 332

Query: 182 KARG-EGDNTQPS----------KEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 188
           K RG  G  T  S          K + S S+  V+   +     +V + ES+SVSKIWL 
Sbjct: 333 KNRGLPGHRTAMSECGFDPTGRLKFSGSGSMRIVEEAAE----KNVVERESFSVSKIWLR 390

[Close]

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot
Match: Q9ZV53 (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-19
Identity = 74/220 (33.64%), Postives = 107/220 (48.64%), Query Frame = 0


Query: 2   CSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFS------------IENPMYDFD------ 61
           CSHAFHV CIDTWLLS+STCPLCR  L + GFS            +E+     D      
Sbjct: 145 CSHAFHVECIDTWLLSHSTCPLCRSNLLS-GFSSHHNLSSSYLLVLESEQSSRDMVPVLE 204

Query: 62  -------DLGEEDECAGNADHRLPNCQKTMEIQEVVNEKGVFPVRLGKFRRMD-AAEVVE 121
                  D+  + E       R  +C    ++  +  +     V+LGKFR +D   E  +
Sbjct: 205 SNSQLGYDVNNDSESTRIRSGR-KSCDPDGDMDGLDEKVVPLEVKLGKFRNIDHVGEGSD 264

Query: 122 TEVGETS--SSNLDARRCYSMGSYQYVV-IDADLRIALSKARGEGDNTQPSKEAESN--S 181
            +    S  S N+D RRC SMGSY+Y++  +A L++ +S  +  G +  PS     +   
Sbjct: 265 QKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKVHVSTKKLSGKDRVPSHRTVMSECG 324

Query: 182 ISPVQADLDGKKLSSVAKGESYSVSKIWLWSKKGKYSGST 191
             P    ++     SV + ES+S+SKIWL  KK K  G++
Sbjct: 325 FDPTVKGIE----KSVVERESFSLSKIWLRGKKEKQKGTS 358

[Close]

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.5e-17
Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           +CSHAFH++CIDTWLLSNSTCPLCR +L     S  N  Y+      E   A  + H   
Sbjct: 225 VCSHAFHLHCIDTWLLSNSTCPLCRRSL-----STSNVCYNH----SETLVAPLSGH--- 284

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
              + ++  +    K VF VRLG+F+  + ++    +V +     +  RRCYSMG+ QY+
Sbjct: 285 ---QQVDDGKASLAKRVFSVRLGRFKSTNESQSQRHDVKDEIGVRM-PRRCYSMGTQQYL 344

Query: 121 VIDADLRIALSKARGEGD 139
           V D D  +ALS +  EG+
Sbjct: 345 VCDQDFVVALSSSPREGN 346

[Close]

BLAST of Cucsat.G8304 vs. NCBI nr
Match: XP_004142353.1 (RING-H2 finger protein ATL46 [Cucumis sativus] >KGN52386.1 hypothetical protein Csa_007863 [Cucumis sativus])

HSP 1 Score: 444 bits (1143), Expect = 3.49e-155
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP
Sbjct: 342 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 375

[Close]

BLAST of Cucsat.G8304 vs. NCBI nr
Match: XP_008458745.1 (PREDICTED: RING-H2 finger protein ATL46 [Cucumis melo] >KAA0037501.1 RING-H2 finger protein ATL46 [Cucumis melo var. makuwa] >TYK01976.1 RING-H2 finger protein ATL46 [Cucumis melo var. makuwa])

HSP 1 Score: 436 bits (1121), Expect = 7.77e-152
Identity = 210/214 (98.13%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNA+HRLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNAEHRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKARGEGDN QPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARGEGDNKQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGK+SGSTEP IGMPSSLNTDLPPWLRQTQGP
Sbjct: 342 SKKGKFSGSTEPQIGMPSSLNTDLPPWLRQTQGP 375

[Close]

BLAST of Cucsat.G8304 vs. NCBI nr
Match: XP_023550828.1 (RING-H2 finger protein ATL46-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 398 bits (1023), Expect = 6.92e-137
Identity = 198/217 (91.24%), Postives = 203/217 (93.55%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPG+SIENPMYDFDDLGEEDEC GNAD+RLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGYSIENPMYDFDDLGEEDECGGNADYRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVET-EVGETSSSNLDARRCYSMGSYQY 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRM+A E VET EVGETSSSNLDARRCYSMGSYQY
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMNAVEAVETTEVGETSSSNLDARRCYSMGSYQY 281

Query: 121 VVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWL 180
           VVIDADLRIALSKARGEGDN QP K  +SNSISPVQADLDGKKL+SVAKGESYSVSKIWL
Sbjct: 282 VVIDADLRIALSKARGEGDNKQPCKGTDSNSISPVQADLDGKKLNSVAKGESYSVSKIWL 341

Query: 181 WSKKGKYSGSTEPH--IGMPSSLNTDLPPWLRQTQGP 214
           WSKKGKYS STEP   IGM SSLNTDLP WLRQTQGP
Sbjct: 342 WSKKGKYSSSTEPSQPIGMDSSLNTDLP-WLRQTQGP 377

[Close]

BLAST of Cucsat.G8304 vs. NCBI nr
Match: KAG6578636.1 (RING-H2 finger protein ATL46, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016177.1 RING-H2 finger protein ATL46, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1011), Expect = 4.62e-135
Identity = 196/215 (91.16%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPG+SIENPMYDFDDLGEEDEC GNAD+RLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGYSIENPMYDFDDLGEEDECGGNADYRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVET-EVGETSSSNLDARRCYSMGSYQY 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRM+A E VET EVGETSSSNLDARRCYSMGSYQY
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMNAVEAVETTEVGETSSSNLDARRCYSMGSYQY 281

Query: 121 VVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWL 180
           VVIDADLRIALSKARGEGDN QP K  +SNSISPVQADLDGKKL+SVAKGESYSVSKIWL
Sbjct: 282 VVIDADLRIALSKARGEGDNKQPCKGTDSNSISPVQADLDGKKLNSVAKGESYSVSKIWL 341

Query: 181 WSKKGKYSGSTEPH--IGMPSSLNTDLPPWLRQTQ 212
           WSKKGKYS STEP   IGM SSLNTDLP WLRQTQ
Sbjct: 342 WSKKGKYSSSTEPSQPIGMDSSLNTDLP-WLRQTQ 375

[Close]

BLAST of Cucsat.G8304 vs. NCBI nr
Match: XP_022134198.1 (RING-H2 finger protein ATL46 [Momordica charantia])

HSP 1 Score: 393 bits (1009), Expect = 8.12e-135
Identity = 190/214 (88.79%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFH+NCIDTWLLSNSTCPLCRGTLFNPGFSIENPM+DFDDLG+EDEC+GNAD R P
Sbjct: 162 MCSHAFHINCIDTWLLSNSTCPLCRGTLFNPGFSIENPMFDFDDLGDEDECSGNADRRFP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
            CQKTMEIQEVVNEKGVFPVRLGKFRRM+ AE VETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 TCQKTMEIQEVVNEKGVFPVRLGKFRRMNPAEPVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKAR EGDN Q SK+ E NSISPVQADLDGKKL+SV KGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARREGDNKQLSKDXEPNSISPVQADLDGKKLNSVVKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGK++ STEP IGMPSSLN DLP WLRQTQGP
Sbjct: 342 SKKGKFASSTEPQIGMPSSLNMDLP-WLRQTQGP 374

[Close]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL
Match: A0A0A0KX50 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G630880 PE=4 SV=1)

HSP 1 Score: 444 bits (1143), Expect = 1.69e-155
Identity = 214/214 (100.00%), Postives = 214/214 (100.00%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP
Sbjct: 342 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 375

[Close]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL
Match: A0A5A7T7E5 (RING-H2 finger protein ATL46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G00820 PE=4 SV=1)

HSP 1 Score: 436 bits (1121), Expect = 3.76e-152
Identity = 210/214 (98.13%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNA+HRLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNAEHRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKARGEGDN QPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARGEGDNKQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGK+SGSTEP IGMPSSLNTDLPPWLRQTQGP
Sbjct: 342 SKKGKFSGSTEPQIGMPSSLNTDLPPWLRQTQGP 375

[Close]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL
Match: A0A1S3C9T4 (RING-H2 finger protein ATL46 OS=Cucumis melo OX=3656 GN=LOC103498060 PE=4 SV=1)

HSP 1 Score: 436 bits (1121), Expect = 3.76e-152
Identity = 210/214 (98.13%), Postives = 212/214 (99.07%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNA+HRLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNAEHRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKARGEGDN QPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARGEGDNKQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGK+SGSTEP IGMPSSLNTDLPPWLRQTQGP
Sbjct: 342 SKKGKFSGSTEPQIGMPSSLNTDLPPWLRQTQGP 375

[Close]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL
Match: A0A6J1C1A7 (RING-H2 finger protein ATL46 OS=Momordica charantia OX=3673 GN=LOC111006517 PE=4 SV=1)

HSP 1 Score: 393 bits (1009), Expect = 3.93e-135
Identity = 190/214 (88.79%), Postives = 199/214 (92.99%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFH+NCIDTWLLSNSTCPLCRGTLFNPGFSIENPM+DFDDLG+EDEC+GNAD R P
Sbjct: 162 MCSHAFHINCIDTWLLSNSTCPLCRGTLFNPGFSIENPMFDFDDLGDEDECSGNADRRFP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVETEVGETSSSNLDARRCYSMGSYQYV 120
            CQKTMEIQEVVNEKGVFPVRLGKFRRM+ AE VETEVGETSSSNLDARRCYSMGSYQYV
Sbjct: 222 TCQKTMEIQEVVNEKGVFPVRLGKFRRMNPAEPVETEVGETSSSNLDARRCYSMGSYQYV 281

Query: 121 VIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWLW 180
           VIDADLRIALSKAR EGDN Q SK+ E NSISPVQADLDGKKL+SV KGESYSVSKIWLW
Sbjct: 282 VIDADLRIALSKARREGDNKQLSKDXEPNSISPVQADLDGKKLNSVVKGESYSVSKIWLW 341

Query: 181 SKKGKYSGSTEPHIGMPSSLNTDLPPWLRQTQGP 214
           SKKGK++ STEP IGMPSSLN DLP WLRQTQGP
Sbjct: 342 SKKGKFASSTEPQIGMPSSLNMDLP-WLRQTQGP 374

[Close]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL
Match: A0A6J1K0N9 (RING-H2 finger protein ATL46 OS=Cucurbita maxima OX=3661 GN=LOC111489561 PE=4 SV=1)

HSP 1 Score: 391 bits (1005), Expect = 1.83e-134
Identity = 195/215 (90.70%), Postives = 200/215 (93.02%), Query Frame = 0


Query: 1   MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGFSIENPMYDFDDLGEEDECAGNADHRLP 60
           MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPG+SIENPMYDFDDLGEEDEC GNAD+RLP
Sbjct: 162 MCSHAFHVNCIDTWLLSNSTCPLCRGTLFNPGYSIENPMYDFDDLGEEDECGGNADYRLP 221

Query: 61  NCQKTMEIQEVVNEKGVFPVRLGKFRRMDAAEVVET-EVGETSSSNLDARRCYSMGSYQY 120
           NCQKTMEIQEVVNEKGVFPVRLGKFRRM+A E  ET EVGETSSSNLDARRCYSMGSYQY
Sbjct: 222 NCQKTMEIQEVVNEKGVFPVRLGKFRRMNAVEAEETTEVGETSSSNLDARRCYSMGSYQY 281

Query: 121 VVIDADLRIALSKARGEGDNTQPSKEAESNSISPVQADLDGKKLSSVAKGESYSVSKIWL 180
           VVIDADLRIALSKARGEGDN QP K  +SNSISPVQADLDGKKL+SVAKGESYSVSKIWL
Sbjct: 282 VVIDADLRIALSKARGEGDNKQPCKGTDSNSISPVQADLDGKKLNSVAKGESYSVSKIWL 341

Query: 181 WSKKGKYSGSTEPH--IGMPSSLNTDLPPWLRQTQ 212
           WSKKGKYS STEP   IGM SSLNTDLP WLRQTQ
Sbjct: 342 WSKKGKYSSSTEPSQPIGMSSSLNTDLP-WLRQTQ 375

The following BLAST results are available for this feature:

BLAST of Cucsat.G8304 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL07	1.6e-56	55.05	RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1	[more]
Q8GW38	5.7e-38	50.27	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
Q940Q4	2.4e-20	32.39	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9ZV53	1.2e-19	33.64	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]
Q7X843	1.5e-17	39.86	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]

BLAST of Cucsat.G8304 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142353.1	3.49e-155	100.00	RING-H2 finger protein ATL46 [Cucumis sativus] >KGN52386.1 hypothetical protein ...	[more]
XP_008458745.1	7.77e-152	98.13	PREDICTED: RING-H2 finger protein ATL46 [Cucumis melo] >KAA0037501.1 RING-H2 fin...	[more]
XP_023550828.1	6.92e-137	91.24	RING-H2 finger protein ATL46-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6578636.1	4.62e-135	91.16	RING-H2 finger protein ATL46, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022134198.1	8.12e-135	88.79	RING-H2 finger protein ATL46 [Momordica charantia]	[more]

BLAST of Cucsat.G8304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX50	1.69e-155	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G630880 P...	[more]
A0A5A7T7E5	3.76e-152	98.13	RING-H2 finger protein ATL46 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C9T4	3.76e-152	98.13	RING-H2 finger protein ATL46 OS=Cucumis melo OX=3656 GN=LOC103498060 PE=4 SV=1	[more]
A0A6J1C1A7	3.93e-135	88.79	RING-H2 finger protein ATL46 OS=Momordica charantia OX=3673 GN=LOC111006517 PE=4...	[more]
A0A6J1K0N9	1.83e-134	90.70	RING-H2 finger protein ATL46 OS=Cucurbita maxima OX=3661 GN=LOC111489561 PE=4 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..30 e-value: 8.1E-10 score: 40.6
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 2..25 e-value: 4.9E-9 score: 36.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..214
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..156
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..214
None	No IPR available	PANTHER	PTHR45768:SF54	RING-H2 FINGER PROTEIN ATL47-RELATED	coord: 1..191
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..191
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 2..31
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 2..25 score: 9.361642

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8304.T1	Cucsat.G8304.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0008270	zinc ion binding