Cucsat.G8184 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G8184
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	MICOS complex subunit Mic10
Location	ctg1557: 2361841 .. 2363596 (+)
RNA-Seq Expression	Cucsat.G8184
Synteny	Cucsat.G8184

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCCAAGAGAAATGGGAAAACAGACCGAAAATCAATTCATCCTAAATTCATGTGGGTCATTTTACGGTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTATTTTCCAGAATGGGATAAGAGTCAATTTCCTAAAAAGAGTTGGATGTCCATTTTGATATTGCAGCCTTCAATCCTTTAAATATCAATGGGCCCAAATACGAAAGAGGCCGGGCTGAACCTGCTTAGCAAACAATGCAATACAGGGGTCCGACGGAAACCCTCGTAATACGGCTATTACCTTTTTCCCCCTTCTCACAAAGCCGAAAGAATTGCAGGAAATTCAGAAGAAGAAGAAGGTTGAAGAAAAGAAGTGGGAGAGGATATCATACAACTTTATCCCTTGATAGCGTCTGACATTTCCTTCCTGGATATGGCTGAGAACAAAGGGGTTGTTCCTCCACCCCACGATTTGAGTGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGTAATGATAATCATAATTCCTTCTCACCCTTTCTCTTTTTTTATTTTCACCTTTTTATACTTTCCTAATCTTCACATGGCGGATGTTACAGTTTTAACCCAAGCATTTCTTTCTCTCGCTATTATTTCCTATAAATTGGAATTGCATGTTATTACATTGGATCAATCGTATATTATGATTTTTTTTCGTCTGTCGATTTGGAATGTATGTTTATCAACAAATGAAAGAGATGTACAGATTTATTCTGCGACGAGACTGTAAACTTAAGAAATTTAGGTTCGCTTAACTTGGCTCTTCACATATTTGGTGAGCATTTTTTTCTGTACTACTCGTGTATCCATTTACAAATATCAGGATTTTCTACGTTTTTGTTAAGCAAACTTGTGAATTTGAACCCAGTCAGCCAATTTCGGACATGCAGGATTTTTGCAAAATAAACGGCCTCTTTTGTTGTTTATGTTGAAGTACCGAACTCGTTAATCAATGTTTTATCATGTTTCTGAAACTTCAGTTGTTTGATTCTAATAAACTCACTAATGAGCACTGTATCGTGATTTACGACTAGGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGCGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGTGAAATTCAGATGTACAGTAAAACCATCTCCTTGAATTAGAGTGTGTTTTGAATACATTCTCAAATGTTTAATTTAAAAAATAAGTTATTTTGGAAAAAATTTAGGTGTTTGAAAAACACGGGCCCTTAATCTGTTTAATGTGATATTATTTGATCAACCTTTTTTATTTGATAATGTGAAAAACACGTCCTAGAAGTACATACAATTTGTTTTTGACGAAGTGTCTATGTTGGATACGTCACCTTTTTTTTTTGTAATAAATTGCTCATATGGTTGACACATCATGATCATACTAACATTTAATAAATTGTCCATGTGGTTGCACCTTCATTTTGGTAAGTTTAGATAGGTGGTGGGGCTGAGAGTGACATTAGATCATTGGCCAATCATTCTCAGCTCGAGTATTCAGAAATGTGCACCTGACCCTTCAGGTTCGCATATGTGATTAAACATCTTTCCTCTAAGTCCTCTTAATCATTAAGATGGAATGAATCAGTAGCTGGGAAGTGGAAGCATTTTGATTTATTGGAAAGTTAAGATACCTTAAAATTTTGCTTACTTCTTGGAATGCAAAGGTCTTCTGGAACAGTAGGATTAAGAAACAAGAAATCTTTGCAGAGATTAAGTTGATTAATCTGGCAGAGACGAAGGGTCTGTTGGATGATTATTTGAAACAAAAGCAAGAATCGATAAAGGTGGAGTTTGTTGATCTAGTTAGTGGTTAAACAAAATGTTAGTTGGAGGCAAAATATGGTCATTTGGACTAAAGGAGACTAACATCTTTTGGTCATAGGGTGCCCAGTGGTAGGAAAAGAAAAATATATGGGTGTGGCAAATCCCGAGATCCATGTGGGTTCACTATGGTCCTGGAGATTGTCTAGAGGGGGATATTGAGGGACTTTGTTGGATCTTTGGCGTGTGAGGAATGGTAGAATTCCTAAAAGTTGGGAGAACCCTTTGGATGTTTGGTTCCTCGTTATATTTCATGTTTCCCTTTGAGTTTTGATTTCAAAGAGCTTTTTAAATTATTCTATGGGTTCTATTCTGCACAATTGGAGCCCTTTTCTTGAATTGTGTGTTTCCTTTTGAGGGATTGTCTGTTTTGCCCCCTCGTTTTCTTTCCTTTGTTATCAATGAAAGTTATTTCATAAAAAAAGTAATCAACAAACTTTTGAGAAATAAAGTATCTCCAACGTGTCTGCCCAACATTTCCCAAGAAATTGACTTGTTGCCATGTTTGTGTCTGTCATGTTTGATGTTTGTGCTTCTTTGGTCTTAGGTCCCTTGGTGGGTATTATATTGTGAAGTTGTCCAAAAATTAAAATCCCATGTTTATTTCTATCCTTGTTTATGTAGCCTTTGTGAGTAAGTAAAACTGATAGCAGCTCTTTTATTCTAAGAAGCACATACACGGATACGAGACACAAATACGACACAGACACGGATACGAGACACAAATACGACACAGACACGGATACGAGACACAAATACGACACGGATACGAGACACAAATACGACACAGACACTATGACATGCCATATTTTAAAATTTTATTATACAACACGATAAGGAAATGTTTATTAAAATATTCATTTTCTAAAAATATATATCATTTCTTAGTAAAAGATGCATTTATATGCTTAAAAGACTTATCTCGATGTATTCCACACCCAAAGTTATTATTATTGTCATATGAGTCTTTAGTCTACTCAACAAGTGTTCTATGCATATCTAATGCATTTGTTGCACTAACAAGTGTTCGATAGATGTCCCATCCAGCATCGAAGTGTCCATGTGTTGCACAGGTTCATGGGCACGCTAACCAAACTAAATGGTCTATGCTTCTTAGCTTCTATTTGTTCTTTATCCAGAAGTTTCTTGTACCATTTATTCAGTGGATTTGATCTTTCTTGGTGCGTTGGCATCTTCTTAGGGTAATAGAATAACAGAATAGTCACAGAATAATGACAATATGATGATAGGTGTTCTGATGGTCCTTGTTAAGGTGTGTTGGTAGGGAAATATTGAGAATATTATTTGGGGTTATGTTCGAGTTCAGGATTATAAATAGGAGTTCAGGCTTTGGGAGGGAACTGGAGTTCTGGGAATGCTGTTGTGTGAGTGAGATAGCCTCTCTCAAAAGCTAAGAAAAATACAGATACATAAAAAATGACCACTCAATTTAAGGTGCCTATACTTTGACAAGAGGAAATAAATGGGGTGGAAATTTGGTACCTATTAAGCAAAATATAGGCACCTTAAATTGAGTGGTCATTTTTTATGTATCTGTATTTTTCTTAGCTTGGGGTGGTTTCTAGACACGGAGAAACATGTTGAAGTAAGGAAAAGAACCAAACCCAGCCCACTTAATTATGGCCGTAGTGATTAAAATTAAAATTAAATAAATAAATAAACCCAACTATGGAATTGTTTGTCCTCGTTGTGCAAGCACATTTTCTAAATTTGCTTCACAGGAATAGCTAGTCTTTTAGCTGCTACCTTGTTGTTGTTGTTGTTGTTATTTATTTTAACACATACTTGGGTTTCTAGCCATTATTCTTTCCGTTCACATTTTTTTGTTCATATGTTTGTAATTGAAGGAGAATCCAAATGCCGTTTCCTGAAGTTTCTAAAGCAGATATGATTTGTCTGCACTTTTATTTTTTAATATCTGGTTGGCATTTGGTTTTGTCCAGGAGGGGCAAGATTAAGGACAAATACTGTGCGAAGCAAGCTGTCTTGAGATTGAATGGATGTGAAACCGTAATTTTACTTGAGATTGTTTAAGCTTACTTTTCCCATGTTTGGTTTCAATTGTGTAATGCAAACTTTTTTGCTTGTTGACATTATATTTCACCTCCATGCACGCTACAGATTTTTGTAAGCATCTGCAACTTTCCCCTGTTGCTTATAGAGTTTCGTGAGCTGGAGAGGAAAAAAGAAATCAATAAGTACTCTTCTCGCCACCCTCACTTTGGTTATCTAATTCATGCTTTGACAACCATCTTTTGTATTGTACTCTTTGCAGTTTGATGGCTTGAAGTAGTAGGGAAACGTGATAAAATATTTTGGACTCTGGTTAATGAGACTTAGGTTTTGTTTTTGTTTTTGTCGTTAAAATTATTACTCGATATGGATCATTGAAATTTTAGCAAAATCAATTCTACCCTAAAATTACGT

Coding sequence (CDS)

ATGGCTGAGAACAAAGGGGTTGTTCCTCCACCCCACGATTTGAGTGCCAAGTGGGATGCTTGTCTTGATTTGACGCTGCGTCGATTCGTTTACTCTTCCTTCGCTGGTGCATTTGGTGGCCTCCTTTTCTTCAGGAGTCCGGTGACTCGTTGGGCTTCTATAGCTTTTGGCGCTGGATTGGGCATTGGATCAGCATACACAGATTGTAATTCTTTATTTGAAGGTTCCACCGCCAAATTCACATCTCCAAAAATCACAGAGGCTCAGCCTTCACAGGAGAATCCAAATGCCGTTTCCTGA

Protein sequence

MAENKGVVPPPHDLSAKWDACLDLTLRRFVYSSFAGAFGGLLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQENPNAVS

Homology

[Close]

BLAST of Cucsat.G8184 vs. NCBI nr
Match: XP_011656128.1 (uncharacterized protein LOC101210763 isoform X2 [Cucumis sativus] >KAE8649022.1 hypothetical protein Csa_007941 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 8.30e-25
Identity = 49/53 (92.45%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQI 78
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ+
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cucsat.G8184 vs. NCBI nr
Match: XP_004141570.1 (uncharacterized protein LOC101210763 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 8.30e-25
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ G
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQEG 94

[Close]

BLAST of Cucsat.G8184 vs. NCBI nr
Match: XP_008459687.1 (PREDICTED: MICOS complex subunit Mic10 [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 2.37e-24
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ G
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQEG 94

[Close]

BLAST of Cucsat.G8184 vs. NCBI nr
Match: KAA0039215.1 (MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa] >TYK00403.1 MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.89e-24
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQI 78
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ+
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cucsat.G8184 vs. NCBI nr
Match: XP_038890569.1 (uncharacterized protein LOC120080085 isoform X2 [Benincasa hispida])

HSP 1 Score: 97.8 bits (242), Expect = 4.78e-24
Identity = 49/54 (90.74%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKF SPKITEAQPSQ G
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFASPKITEAQPSQEG 94

[Close]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL
Match: A0A0A0KUY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652290 PE=3 SV=1)

HSP 1 Score: 100 bits (250), Expect = 3.02e-25
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIGG 80
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQ+ G
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQVVG 95

[Close]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL
Match: A0A1S3CAS1 (MICOS complex subunit Mic10 OS=Cucumis melo OX=3656 GN=LOC103498730 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.15e-24
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ G
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQEG 94

[Close]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL
Match: A0A5D3BKW9 (MICOS complex subunit Mic10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00020 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.40e-24
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQI 78
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLF+GSTAKFTSPKITEAQPSQ+
Sbjct: 41 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFQGSTAKFTSPKITEAQPSQV 93

[Close]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL
Match: A0A6J1I917 (uncharacterized protein LOC111472604 OS=Cucurbita maxima OX=3661 GN=LOC111472604 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.88e-22
Identity = 47/54 (87.04%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 26  LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
           L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKF SPKIT  QPSQ G
Sbjct: 83  LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFASPKITGPQPSQEG 136

[Close]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL
Match: A0A6J1DPL6 (uncharacterized protein LOC111022363 OS=Momordica charantia OX=3673 GN=LOC111022363 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 5.44e-22
Identity = 45/54 (83.33%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 26 LHIFGSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKFTSPKITEAQPSQIG 79
          L  F SPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAK  SPK+TE+ PSQ G
Sbjct: 36 LLFFRSPVTRWASIAFGAGLGIGSAYTDCNSLFEGSTAKLASPKLTESHPSQEG 89

The following BLAST results are available for this feature:

BLAST of Cucsat.G8184 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G8184 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656128.1	8.30e-25	92.45	uncharacterized protein LOC101210763 isoform X2 [Cucumis sativus] >KAE8649022.1 ...	[more]
XP_004141570.1	8.30e-25	92.59	uncharacterized protein LOC101210763 isoform X1 [Cucumis sativus]	[more]
XP_008459687.1	2.37e-24	90.74	PREDICTED: MICOS complex subunit Mic10 [Cucumis melo]	[more]
KAA0039215.1	2.89e-24	90.57	MICOS complex subunit Mic10 isoform X2 [Cucumis melo var. makuwa] >TYK00403.1 MI...	[more]
XP_038890569.1	4.78e-24	90.74	uncharacterized protein LOC120080085 isoform X2 [Benincasa hispida]	[more]

BLAST of Cucsat.G8184 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUY2	3.02e-25	90.91	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G652290 PE=3 SV=1	[more]
A0A1S3CAS1	1.15e-24	90.74	MICOS complex subunit Mic10 OS=Cucumis melo OX=3656 GN=LOC103498730 PE=3 SV=1	[more]
A0A5D3BKW9	1.40e-24	90.57	MICOS complex subunit Mic10 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1I917	4.88e-22	87.04	uncharacterized protein LOC111472604 OS=Cucurbita maxima OX=3661 GN=LOC111472604...	[more]
A0A6J1DPL6	5.44e-22	83.33	uncharacterized protein LOC111022363 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007512	MICOS complex subunit Mic10	PFAM	PF04418	DUF543	coord: 5..73 e-value: 4.8E-25 score: 87.3
IPR007512	MICOS complex subunit Mic10	PANTHER	PTHR21304	UNCHARACTERIZED	coord: 12..82
None	No IPR available	PANTHER	PTHR21304:SF8	MICOS COMPLEX SUBUNIT MIC10-LIKE PROTEIN (DUF543)	coord: 12..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G8184.T4	Cucsat.G8184.T4	mRNA
Cucsat.G8184.T5	Cucsat.G8184.T5	mRNA
Cucsat.G8184.T10	Cucsat.G8184.T10	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0061617	MICOS complex
cellular_component	GO:0005743	mitochondrial inner membrane