Cucsat.G7953 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7953
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L18
Location	ctg1556: 452019 .. 454684 (-)
RNA-Seq Expression	Cucsat.G7953
Synteny	Cucsat.G7953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATTACTTTTAATTATATTTCTAAAAAGAATAATTATTTTGTATGAAACCTAAACCATGGTTTCCTCTTTTAACCTTTTCCTACCTCTCACTCTCTCTCGCTCCGGTTGTTTGTTGTGTAGGCGATAGGCGTGTTCTTCCGGCAACTTCACGCAGCCGTTTCCCATCAAGGTCTTCCCGGATCTCTTCTTTTGTCTTTCTCTTTCTTCTTTTTTCTTCACTTCAATTAACTTCAGAATAGGGTAAGTTTAGTATTAATTAGGTCAATAAATCTGAGTTGAATTCGGATTTCTAATGAAATGGAGGGTTAGACTACTGTCATTTCTCGATGCATCTAAGATATCTTACATCTTGCTGATAAATTTTGTTTCTAATTTGTTTTCCTTTTCTTTTGAAACCGTTTATTGGGTTCAGTCTGTTGCTAGAATTGTTGATAGTATAGGAATATAAAGGAGCATTGTTTGTTACCATGATTGGGAGTTTCACTTTTATCTTTCAGTTTGGTGGGATTATTTGAGGGGCTTGCTTAAAGTGGCTACCTCGATTCTATATCGTTGAATGTATGAGGGAAAATTCGATAATGCTCTCTTCAACATGGATTTATGTTTGTGAGATTTGAACCTGTTGGAAATCTCTTTGCAGTGGCCATAGTGGGTAGAGTTTCCTCAATTTGGCTCGAGTCATTGCAAATTGAAACCCTGAGAAATCCGGCACAATATAAGCTCAAATTAGTCGAAACTGAATAAATTAACTCAAACCCATTGGTGTTGTTGAAAACTGGGCCTGTCTAATCCATGCTCACTGGATTTGTTGTCCATTTTCACTACTAATATTCATTTAGCGAAAAAAATCTGCAAAATAGAACGTATATCCTTGGGGCTTGGTCTTATGAATAATGCTATTTAAAATTGTTCAAGAACAATTACCCTCTATATTTGTTGCTACTAATAATAGTAGAGCATAGCCATTAACATTGCCATTACTTTGAAAGCTATGTTAGGAATATTAAACAATGATTTGTTTCGATGCCCTTTTGTCACTTATCATTTTTGTATTTATGTGTTAGGATTCACTTCACTTGATCAGAGGTGGTTTCAGTGTTCTTTCATTGTCTTTTTCTGTACGAAATTGGTTTTTTAGGGCCAAAATGATGAATGAAAATAGGGAAAACAATAGCATTTAAACAAATATATTAATGAATAATTAACCGATTGGTAGCTTAGCTTAAGCTTGAGAGGATTGAAGATTCTGATATTGACCCTTATTTGTGTTGTTTAGAGTATAATTGAATTGGAGTAGCCAAGGGAGATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGCATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGACCCTTTTTTTCTTTTTCCAATTTGCTTCATTTTGGCCCTCCTTGGAAATAGTTATCTGGTTTAATTGTTGGGCTTCATCAATCAATGCTTAATATTATCTGAATTTGTAATGAAATGTGATGAGATGCATTGTTGGACTTTTTGTCTGTCTTTATCGTCGTTTATAAATGAGTTTGAGATGAATATGAACAGTGAGCAGTGTTAGTTTAAGAAAAATTATAAAACTTAAACTTGAGTTATTTCCAGCTGAAGCCAAGTCTCCAATCTTTTTCATAGATCAAAATTTTGCAATTGTTGCTACCATATCACCAAAAGATTTTTTCCAATGTTAACTCAATAACTTGTACACAAATGTCAATATTATTTTAACATTCTTAAACATAAAAGAATCCAATAAACTGAAGGCCAAACATGTAATTAATGATTAAAAAAAACCACCTAGTATGTGCAAAACTTCATAAAATACATATCATTTTAAACCAACAATGTCACACCCCACCCGAGCACCTTCTCTTGCTTGAAAAGAGGTGTGAAGCTAGCAGACATCAGTATTTTGGCAGAGCGACTGAGGAAGGGCCGAAGACCCACAAGAAGGATCCATGAAGGTCAAAGACCCACAAGAAGGATCCATGGATAGTTGGTGAAGGGAAGAAACTAGTTGAGAACATGTTGAAGACCTAGAAGCCTGGATGTAGAAGATTGAAGAGTTCAAGGTTCAGATGTCAACTATTTAAGTGGGGGAGAATGTAACATGCATACTTGTCCCGAGCGATGTTTGCCTATGGTTGTATGTTCAAATATCCTTGATTGATCTTATCTTTATGTCTTGTATTTAATTTAGCTAACTGCTCTCCTTTTTAAGTCATAAAGCTTGTATGTGACGTTTCAATATTTTCATATGCAAGTCCACCAGAGCTGAAAATGTTCAAAATGTGCAATAGGAGAGACATAGTAGTTGAATCCCTACCCAAGCTTTGTCGCACTCTTTGAAATCAAAATTTTTTGTTGCAATT

Coding sequence (CDS)

ATGGTGATTCCTCCTCCAATCAAGCCACCAAGATTAACCCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACAAGTTTGTGAGTGCCCAGGTGATCCACTCTGAAACAGCCATTGTTGCTTCAGCTGCAAGCTCACAAGAGAAGGCATTGCAGTCGAGCATGGAGTCGACAAGGGATGTTGCTGCTGCTGCAAAGATTGGAAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGGGAACAGAGATATCATGGTAAGGTCAAAGCTGTTATTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTGA

Protein sequence

MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL

Homology

[Close]

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot
Match: A7HM36 (50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) OX=381764 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-09
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 26  TNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLKGIPAV 85
           + K + AQ+I     I   AAS+ EKA++  ++ T ++ AA ++GKL+ ER L KGI  V
Sbjct: 36  SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95

Query: 86  CVHLKREQRYHGKVKAVIDSVREAGIK 113
            V  +   +YHG+VKA+ D+ REAG+K
Sbjct: 96  -VFDRGGFKYHGRVKALADAAREAGLK 121

[Close]

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot
Match: A8IAP8 (50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) OX=438753 GN=rplR PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I         AASS EK L+SS+++  DV AA  IGKL+ ER   K
Sbjct: 29  LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           G+ AV V  +    YHG+VKA+ +  RE G++
Sbjct: 89  GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQ 119

[Close]

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot
Match: Q89A81 (50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) OX=224915 GN=rplR PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T+K + AQ+I S+ A+V ++AS+ EK + + ++ T ++ A+  IGK + ER L+K
Sbjct: 30  LVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIGKKIAERALMK 89

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+VKA+ D+ RE+G+K
Sbjct: 90  GIINVSFDRSGFQ-YHGRVKALADAARESGLK 120

[Close]

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot
Match: P52863 (50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.9e-09
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T + V AQVI S  + V +AAS+ EKA++  +++T +V AA  +GK + ER L K
Sbjct: 26  LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           G+  V       Q YHG+V A+ +S REAG+K
Sbjct: 86  GVETVAFDRSGFQ-YHGRVAALAESAREAGLK 116

[Close]

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot
Match: B6EPU1 (50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 GN=rplR PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-09
Identity = 41/92 (44.57%), Postives = 56/92 (60.87%), Query Frame = 0


Query: 21  LKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMESTRDVAAAAKIGKLLGERLLLK 80
           L +H T +   AQVI    + V +AAS+ EKA++  + +T + AAA  IGKL+ ER + K
Sbjct: 26  LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85

Query: 81  GIPAVCVHLKREQRYHGKVKAVIDSVREAGIK 113
           GI  V       Q YHG+V A+ DS REAG+K
Sbjct: 86  GITNVAFDRSGFQ-YHGRVAALADSAREAGLK 116

[Close]

BLAST of Cucsat.G7953 vs. NCBI nr
Match: XP_004144339.1 (uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical protein Csa_012115 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 3.17e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. NCBI nr
Match: XP_008462699.1 (PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal protein L18 [Cucumis melo var. makuwa] >TYK28743.1 50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 208 bits (530), Expect = 1.77e-67
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. NCBI nr
Match: KAG6590442.1 (hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023978.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (526), Expect = 7.20e-67
Identity = 106/114 (92.98%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. NCBI nr
Match: XP_022961444.1 (uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 uncharacterized protein LOC111462025 [Cucurbita moschata])

HSP 1 Score: 206 bits (525), Expect = 1.02e-66
Identity = 106/114 (92.98%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. NCBI nr
Match: XP_022968817.1 (uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968820.1 uncharacterized protein LOC111467940 [Cucurbita maxima])

HSP 1 Score: 205 bits (522), Expect = 2.93e-66
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL
Match: A0A0A0L0Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.54e-70
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST
Sbjct: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL
Match: A0A5D3DYC1 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00840 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 8.55e-68
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL
Match: A0A1S3CHJ0 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 8.55e-68
Identity = 110/114 (96.49%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPPIKPPRL QYLKPYVLKMHFTNKFVSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPIKPPRLIQYLKPYVLKMHFTNKFVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQ+YHGKVKAVIDSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVIDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL
Match: A0A6J1HE21 (uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC111462025 PE=4 SV=1)

HSP 1 Score: 206 bits (525), Expect = 4.95e-67
Identity = 106/114 (92.98%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEKAL+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKALRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLVLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

[Close]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL
Match: A0A6J1I0R8 (uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.42e-66
Identity = 105/114 (92.11%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   MVIPPPIKPPRLTQYLKPYVLKMHFTNKFVSAQVIHSETAIVASAASSQEKALQSSMEST 60
           MVIPPP++PPRLTQYLKPYVLKMHFTNK+VSAQVIHSETA VASAASSQEK L+SSMEST
Sbjct: 1   MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMEST 60

Query: 61  RDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQRYHGKVKAVIDSVREAGIKLL 114
           RDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQ+YHGKVKAV+DSVREAGIKLL
Sbjct: 61  RDVAAAAKIGKLLGERLMLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIKLL 114

The following BLAST results are available for this feature:

BLAST of Cucsat.G7953 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A7HM36	1.7e-09	42.53	50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5...	[more]
A8IAP8	2.3e-09	43.48	50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5...	[more]
Q89A81	2.9e-09	41.30	50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia pistaciae (str...	[more]
P52863	2.9e-09	43.48	50S ribosomal protein L18 OS=Vibrio proteolyticus OX=671 GN=rplR PE=3 SV=1	[more]
B6EPU1	6.6e-09	44.57	50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain LFI1238) OX=316275 G...	[more]

BLAST of Cucsat.G7953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144339.1	3.17e-70	100.00	uncharacterized protein LOC101221233 [Cucumis sativus] >KGN54729.1 hypothetical ...	[more]
XP_008462699.1	1.77e-67	96.49	PREDICTED: 50S ribosomal protein L18 [Cucumis melo] >KAA0046517.1 50S ribosomal ...	[more]
KAG6590442.1	7.20e-67	92.98	hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022961444.1	1.02e-66	92.98	uncharacterized protein LOC111462025 [Cucurbita moschata] >XP_022961445.1 unchar...	[more]
XP_022968817.1	2.93e-66	92.11	uncharacterized protein LOC111467940 [Cucurbita maxima] >XP_022968819.1 uncharac...	[more]

BLAST of Cucsat.G7953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Z6	1.54e-70	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G437000 PE=4 SV=1	[more]
A0A5D3DYC1	8.55e-68	96.49	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CHJ0	8.55e-68	96.49	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103500999 PE=4 SV=1	[more]
A0A6J1HE21	4.95e-67	92.98	uncharacterized protein LOC111462025 OS=Cucurbita moschata OX=3662 GN=LOC1114620...	[more]
A0A6J1I0R8	1.42e-66	92.11	uncharacterized protein LOC111467940 OS=Cucurbita maxima OX=3661 GN=LOC111467940...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 20..96 e-value: 6.4E-8 score: 32.9
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..96
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 11..100 e-value: 2.8E-16 score: 61.7
None	No IPR available	PANTHER	PTHR12899:SF6	OS03G0694800 PROTEIN	coord: 1..96
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 11..82 e-value: 1.47206E-20 score: 77.1951
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 13..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7953.T1	Cucsat.G7953.T1	mRNA
Cucsat.G7953.T2	Cucsat.G7953.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome