Cucsat.G7724 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7724
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	30S ribosomal protein S13, chloroplastic-like
Location	ctg1546: 44153 .. 45275 (-)
RNA-Seq Expression	Cucsat.G7724
Synteny	Cucsat.G7724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGTGTTGTTGATATGTGTAGTTAGCCTCTCTCTTTCTCTCTCTCCCTCGCCATCCTCTGAACCGCCTTCCCAGACATGTTTGGAGTTCGTCGTTCCTTGGGGATCGTCTCTAATGCTCTCCTTCCTCGCTTTGAATCATTATCAGTGAGTTCATTAACCTCGCCTATTTCTTTTTTCTTTTTCATTTCATAAGAATTTTAGAATTTAGGGCTCCTCAACCTCACACTATTCGGTTCAATCATTCCTCTTACTTCTTTCCTGTTTTGAAATCTCCATATTCAATTTGATTTCCTGTTCATGCATTGATTCCCGTTTTAAGGTTTAGAGTGTTTGTATGAGGTGAAGGAATGTGTGGATGATACGTGCAGATCCAGTCGATTCATTTAGGAGCAGGTATGGAGATCCCCGATAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGACTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGTAAATTAGTTTCTCTTTCTCTAGCTTTTCTTCCCATGAATTTCACATACGCGGGGATAGCGTAACAGGATGCTTTGCTTGCAGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGCCATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTTTCATTGAGCAAACAGTTTTGCAATTTCTCCTCTCTTCTTGCATTCTTGAACTGATTGATTATAAACATATTTGGATTTCAACCAAGTTTCATGATTTCTCTTTTAGTCCCAATATTTTGTTTAGGGTTCATTTAGTGAAGAATTCATTATTGGATGGGGATGAATGGCTTTAGAAACGTTTCAAATGTTTGTAACCAATGAAAATTGCTTAATGATTTCATGTCCAACTATTGCAGTTTGCATTGTTGTGTATGTTCATCAAGTTTGTGTCTATATAGTCTATAATAATTTGTGAAGTTTAGAATCGGTTCTTTGAAGACTGATCATAAAACT

Coding sequence (CDS)

ATGGAGATCCCCGATAGCAAACCACTCAAATTTGCACTTCAGTACATCAATGGAATTGGCCGAGCGAGAGCAAACCAAGTTCTTGCCCAGCTACACTTGGAAAACAAGCTTTCCAAAGATTTGACTAAAAAAGAGCTCATTTTTCTTGCAGACGAAATTTCCAAGTACACGGTTGGACATGAGCTGGATAAATGTGTTCAAAGGGACATTGGTAGGTTGCAGGACATTCAGTGCCATAGAGGGATTAGGCATGAGCAAGGATTACCATGTAGAGGCCAACGAACGAAGACTAATGCTAGGACTGTGAAGTCGAAACAGACCCGTGTTGGAAAGAGGAAAGCCTTTCATTGA

Protein sequence

MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH

Homology

[Close]

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot
Match: Q8LPW2 (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP13 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-30
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 2   EIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHE 61
           EIPD+K L +ALQ ++GIGR++A  ++A+L +ENK  KDL+K+EL  + + +SKY +G++
Sbjct: 38  EIPDNKRLVYALQNLHGIGRSKAQHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGND 97

Query: 62  LDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKR 113
           L KCV+RD+GRL  IQC+RGIRH   LPCRGQRT TNART +S++T  G R
Sbjct: 98  LKKCVERDVGRLVGIQCYRGIRHVDSLPCRGQRTHTNARTRRSRKTFSGSR 148

[Close]

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot
Match: P42732 (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 61/114 (53.51%), Postives = 87/114 (76.32%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           +EIP +K ++++LQYI+GIGR RA Q+L  L +ENK++KD+ ++ELI L DE+SKY +  
Sbjct: 53  VEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEG 112

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRK 114
           +L +     I RL++IQC+RG+RH QGLPCRGQRTK N RT+K K+  + GK+K
Sbjct: 113 DLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKIAIAGKKK 166

[Close]

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot
Match: P82163 (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 PE=1 SV=3)

HSP 1 Score: 119.0 bits (297), Expect = 3.5e-26
Identity = 60/115 (52.17%), Postives = 90/115 (78.26%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           +EIP++K ++++LQYI+GIGR+RA Q+L  L LENKL+K+L++ EL+ + DE++KY +  
Sbjct: 53  VEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEG 112

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVK-SKQTRV-GKRK 114
           +L +     I RL++IQC+RG+RH QGLPCRGQRTK N RT+K  K+ ++ GK+K
Sbjct: 113 DLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 167

[Close]

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot
Match: Q9CA19 (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS13 PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.8e-25
Identity = 60/114 (52.63%), Postives = 81/114 (71.05%), Query Frame = 0


Query: 2   EIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGHE 61
           E+P++KPLK  LQ + GIGR +++QVL  L + NKL++DLT KELI L +E+ ++  G E
Sbjct: 38  EVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDE 97

Query: 62  LDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA 115
           L + V  +I RL ++ C+RG RH  GLPCRGQRT TNART K K   + GK+KA
Sbjct: 98  LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNARTKKGKAVAIAGKKKA 151

[Close]

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot
Match: A9B434 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785 / 114-95) OX=316274 GN=rpsM PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-19
Identity = 57/118 (48.31%), Postives = 81/118 (68.64%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLE-NKLSKDLTKKELIFLADEISK-YTV 60
           ++IP +K ++ +L YI GIGR  + ++LA+ ++  N   KDLT+ E+I L + I + YTV
Sbjct: 7   VDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDYTV 66

Query: 61  GHELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV--GKRKA 115
             +L + VQ +I RL DI C+RGIRH +GLP RGQRTKTNART + K+     GK+KA
Sbjct: 67  EGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKA 124

[Close]

BLAST of Cucsat.G7724 vs. NCBI nr
Match: XP_011655183.1 (small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_011655184.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >XP_031741499.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus] >KAE8652086.1 hypothetical protein Csa_018623 [Cucumis sativus])

HSP 1 Score: 234 bits (596), Expect = 1.75e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH
Sbjct: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 116
           ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 116

[Close]

BLAST of Cucsat.G7724 vs. NCBI nr
Match: XP_004140326.1 (small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] >XP_031741498.1 small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Cucumis sativus] >KGN50980.1 hypothetical protein Csa_007892 [Cucumis sativus])

HSP 1 Score: 234 bits (596), Expect = 5.05e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH
Sbjct: 33  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 92

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 116
           ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 93  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 148

[Close]

BLAST of Cucsat.G7724 vs. NCBI nr
Match: XP_038876076.1 (small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hispida] >XP_038876077.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hispida] >XP_038876078.1 small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hispida])

HSP 1 Score: 185 bits (469), Expect = 1.11e-57
Identity = 91/116 (78.45%), Postives = 106/116 (91.38%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIP++KPLK+ALQYINGIGR+RANQVL++LHLENKL+KDLTK+EL+ L DEISKYTVGH
Sbjct: 31  MEIPNNKPLKYALQYINGIGRSRANQVLSELHLENKLAKDLTKRELVDLVDEISKYTVGH 90

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKAF 115
           EL  CV++DI RLQ I+C+RGIRHEQGLPCRGQRTKTNART+KSKQ  V G +KAF
Sbjct: 91  ELSNCVKKDISRLQAIKCYRGIRHEQGLPCRGQRTKTNARTMKSKQIFVIGNKKAF 146

[Close]

BLAST of Cucsat.G7724 vs. NCBI nr
Match: KAG6578996.1 (Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186 bits (473), Expect = 1.95e-57
Identity = 90/114 (78.95%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           +EIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGH
Sbjct: 94  VEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGH 153

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA 114
           EL+KCV++DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 154 ELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKA 207

[Close]

BLAST of Cucsat.G7724 vs. NCBI nr
Match: XP_022141627.1 (30S ribosomal protein S13, chloroplastic-like [Momordica charantia])

HSP 1 Score: 184 bits (467), Expect = 2.23e-57
Identity = 91/115 (79.13%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPD KPL+FALQYI+GIGR+RANQVLA+LHL NKL+KDLTK+EL+ L DEISKY VGH
Sbjct: 31  MEIPDDKPLRFALQYIDGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGH 90

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA 114
           EL+ CV++DI RLQ+IQCHRGIRH QGLPCRGQRTKTNART+KSKQ  V GK+KA
Sbjct: 91  ELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNARTMKSKQIVVAGKKKA 145

[Close]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL
Match: A0A0A0KMX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1)

HSP 1 Score: 234 bits (596), Expect = 2.45e-77
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH
Sbjct: 33  MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 92

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 116
           ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH
Sbjct: 93  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKAFH 148

[Close]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL
Match: A0A6J1CKC9 (30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111011935 PE=3 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.08e-57
Identity = 91/115 (79.13%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPD KPL+FALQYI+GIGR+RANQVLA+LHL NKL+KDLTK+EL+ L DEISKY VGH
Sbjct: 31  MEIPDDKPLRFALQYIDGIGRSRANQVLAELHLGNKLAKDLTKRELVILGDEISKYMVGH 90

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRV-GKRKA 114
           EL+ CV++DI RLQ+IQCHRGIRH QGLPCRGQRTKTNART+KSKQ  V GK+KA
Sbjct: 91  ELNSCVKKDIARLQEIQCHRGIRHGQGLPCRGQRTKTNARTMKSKQIVVAGKKKA 145

[Close]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL
Match: A0A6J1JVL8 (small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111489279 PE=3 SV=1)

HSP 1 Score: 184 bits (467), Expect = 1.12e-57
Identity = 90/114 (78.95%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGH
Sbjct: 33  MEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGH 92

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA 114
           EL KCV++DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ    K+KA
Sbjct: 93  ELKKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSEKKKA 146

[Close]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL
Match: A0A6J1FGA3 (30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445150 PE=3 SV=1)

HSP 1 Score: 187 bits (474), Expect = 1.68e-56
Identity = 90/114 (78.95%), Postives = 105/114 (92.11%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           +EIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGH
Sbjct: 33  LEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGH 92

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA 114
           EL+KCV++DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 93  ELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKA 146

[Close]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL
Match: A0A2P5D3D1 (Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_263780 PE=3 SV=1)

HSP 1 Score: 147 bits (372), Expect = 3.51e-43
Identity = 71/113 (62.83%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60
           MEIPD K L+FAL YI+GIGRARA Q+L++L++ENKL+K+LTK+E+  L +E+SKY++G 
Sbjct: 38  MEIPDDKRLEFALPYIHGIGRARARQILSELNMENKLAKELTKREVFVLGEELSKYSLGK 97

Query: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRK 113
           EL  CV+RD+ RL DI+C+RG RH  GLP RGQRTKTNART KS++  V  RK
Sbjct: 98  ELRSCVERDVKRLMDIRCYRGARHSDGLPTRGQRTKTNARTNKSQKLPVAARK 150

The following BLAST results are available for this feature:

BLAST of Cucsat.G7724 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LPW2	1.8e-30	56.76	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max OX=3847 GN=RSP...	[more]
P42732	2.2e-28	53.51	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1...	[more]
P82163	3.5e-26	52.17	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS13 P...	[more]
Q9CA19	1.8e-25	52.63	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana OX=37...	[more]
A9B434	2.4e-19	48.31	30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM ...	[more]

BLAST of Cucsat.G7724 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655183.1	1.75e-77	100.00	small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sati...	[more]
XP_004140326.1	5.05e-77	100.00	small ribosomal subunit protein S13, mitochondrial isoform X1 [Cucumis sativus] ...	[more]
XP_038876076.1	1.11e-57	78.45	small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Benincasa hi...	[more]
KAG6578996.1	1.95e-57	78.95	Small ribosomal subunit protein S13, mitochondrial, partial [Cucurbita argyrospe...	[more]
XP_022141627.1	2.23e-57	79.13	30S ribosomal protein S13, chloroplastic-like [Momordica charantia]	[more]

BLAST of Cucsat.G7724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMX9	2.45e-77	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G381850 PE=3 SV=1	[more]
A0A6J1CKC9	1.08e-57	79.13	30S ribosomal protein S13, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1JVL8	1.12e-57	78.95	small ribosomal subunit protein S13, mitochondrial-like OS=Cucurbita maxima OX=3...	[more]
A0A6J1FGA3	1.68e-56	78.95	30S ribosomal protein S13, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A2P5D3D1	3.51e-43	62.83	Ribosomal protein OS=Trema orientale OX=63057 GN=TorRG33x02_263780 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10	30s ribosomal protein s13, domain 2	coord: 66..115 e-value: 2.2E-21 score: 77.1
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 2..101 e-value: 7.0E-26 score: 91.1
IPR001892	Ribosomal protein S13	PIRSF	PIRSF002134	RPS13p_RPS13a_RPS18e_RPS13o	coord: 1..115 e-value: 7.6E-38 score: 127.4
IPR001892	Ribosomal protein S13	PROSITE	PS50159	RIBOSOMAL_S13_2	coord: 1..104 score: 29.896864
None	No IPR available	GENE3D	1.10.8.50		coord: 1..64 e-value: 2.4E-15 score: 58.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..116
None	No IPR available	PANTHER	PTHR10871:SF28	SMALL RIBOSOMAL SUBUNIT PROTEIN S13, MITOCHONDRIAL	coord: 1..114
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 1..114
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 80..93
IPR010979	Ribosomal protein S13-like, H2TH	SUPERFAMILY	46946	S13-like H2TH domain	coord: 2..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7724.T2	Cucsat.G7724.T2	mRNA
Cucsat.G7724.T1	Cucsat.G7724.T1	mRNA
Cucsat.G7724.T3	Cucsat.G7724.T3	mRNA
Cucsat.G7724.T4	Cucsat.G7724.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding