Cucsat.G7094 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G7094
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Myb/SANT-like DNA-binding domain protein
Location	ctg1528: 876395 .. 878053 (-)
RNA-Seq Expression	Cucsat.G7094
Synteny	Cucsat.G7094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGGACAAAACAAGAAAGATCATCATTGCTAAGGACTCAGTGTGGGATGATTATATCAAGGTAAGTAGAAAATCTGCAGAATTCCATGCATTTGATCATGTTCTTTATTTTTGTTGTTGTTACTGTTTGTTTTGTAAAGTGAATCATTTAGAATCACGAAAAGAAATACACGGGCACACGAAAAATAGGCCCATAAGAGGGGCTGGTTTGATCGTGTTCTTATTCTTTGGATTACTAGCATCAAACATTTACTTCTTTTTTTTTTTCCTTTCCTTTTTGGTTTGAGGTAAGAGATAGTTCATAGCCACAAAAGAGATGTACAATACGGGAGTGAAATGAGAAATTCTACCTCTCACTTATACTAAGGTGGTGAGGAATCCTTTTTCCTTTTTTGTTGCCTTGAATTGGAAAAAGTAATGGTTACAAAAATCTTTAGTAGGATGTCTTCTCTCAGCATTAAGGTCTGGCCACATTTGATAATAATTTCAATTTTGGCTTTCTTTTTCTATAAAAATTATGCTTGTTTCTTCTCAATTTCTTTAATATGGTTTTCACCTCTTTGAAAACAAGAACTAGTTGTAATAAAATACAGAAACCAGAACAATTGAAATTACAAGTAGATAATAACATTTTTTTGCTAAATTTTCAAAAACAAGAACAATTTTTAAAAACTACAAGTAGATAATAAAACACAGAAATTTATGGGTGGAACTAGTTATATAAGCATAATTTTAAAAAACCGAATGGTTATCAAACAAAATTTAAAAGTCTAGGAGAATGAAGAAGCACCTTAACTATTTTCTCCTTATAGATATTTCATATTTCAATTTATTTTGCGCTTAAGTCCAAAAATATTTTCTTATACTACTGATCCACCGTATGTTGGCTTTACTTTTAAATCTTAGTCCACCAAACGATTGGAAACCTTATGCTTGATGCTCTTCCAAATGCCCATGAACAACCAAAATAAGGAAAAAGGTGTTTTCCAAAATTTCCTACTACGAAATAATTAGTGCTGTTGGTCCTCCCTTGCCTTTATTCTAAGACAACAACTAGAGCATAGAGAATTTTTTATGATCTGATATATCACTTTGGAATTATGTTTGAAACTGATATGTAGCAGGTAACTGGAATGAGTTACGTGATAAATGAAAGACTTGATTAATATCATTGAGAAGGTAGCAAGAGTCTAGAGAAAGTTCCTGATGTTCTCTATGTCATGAACAAGGGACCAGTTTAATGAAGCTAAATGGTGAAATCTTGATATACGAACAATCGTGATGTTTGAAATTTATGCTGCTTCATTCTCATTTTCTATTTGATCTGAAATACCGTGGACACGTTAGAAGATATATTCTACCTGAATTTTAGCTCCAGAATAACAATTTGCTATCATTTTCTTTGCATGTAGATCAATCCTGAGGCCAAAAGCTCTCGTGGTAGAGTATTTGAAAACTATGATCAGTTTTGCATTTCCTTTAGATATTACAATATGGAGGTGTTGGATTTCCCTGTTGTCGTAAACGATGGAAATACTGGATGTGAAGGGAACTCTTTGGGGTGGACTAGTGAAATGGACCATTGCCTCAGAAGAGTTCTCATGCAGCATGTGATTCCTGGGAACAAAGGCATGTTAGATACTAAACTCAATCCCCTTG

Coding sequence (CDS)

TGGGACAAAACAAGAAAGATCATCATTGCTAAGGACTCAGTGTGGGATGATTATATCAAGATCAATCCTGAGGCCAAAAGCTCTCGTGGTAGAGTATTTGAAAACTATGATCAGTTTTGCATTTCCTTTAGATATTACAATATGGAGGTGTTGGATTTCCCTGTTGTCGTAAACGATGGAAATACTGGATGTGAAGGGAACTCTTTGGGGTGGACTAGTGAAATGGACCATTGCCTCAGAAGAGTTCTCATGCAGCATGTGATTCCTGGGAACAAAGGCATGTTAGATACTAAACTCAATCCCCTT

Protein sequence

WDKTRKIIIAKDSVWDDYIKINPEAKSSRGRVFENYDQFCISFRYYNMEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL

Homology

[Close]

BLAST of Cucsat.G7094 vs. NCBI nr
Match: KGN66565.1 (hypothetical protein Csa_007513 [Cucumis sativus])

HSP 1 Score: 167 bits (423), Expect = 1.14e-49
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 20  KINPEAKSSRGRVFENYDQFCISFRYYNMEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCL 79
           KINPEAKS  GRVFENYDQFCISFRYYNMEVLDFPVVVNDG TGCEGNSLGWTSEMDHCL
Sbjct: 10  KINPEAKSFCGRVFENYDQFCISFRYYNMEVLDFPVVVNDGKTGCEGNSLGWTSEMDHCL 69

Query: 80  RRVLMQHVIPGNKGMLDTKLNPL 102
           RRVL QHVIPGNKGMLD KLNP+
Sbjct: 70  RRVLKQHVIPGNKGMLDNKLNPV 92

[Close]

BLAST of Cucsat.G7094 vs. NCBI nr
Match: XP_031739652.1 (uncharacterized protein LOC116403204 [Cucumis sativus])

HSP 1 Score: 114 bits (285), Expect = 4.80e-30
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 0


Query: 48  MEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL 102
           MEVLDFPVVVNDG TGCEGNSLGWTSEMDHCLRRVL QHVIPGNKGMLD KLNP+
Sbjct: 1   MEVLDFPVVVNDGKTGCEGNSLGWTSEMDHCLRRVLKQHVIPGNKGMLDNKLNPV 55

[Close]

BLAST of Cucsat.G7094 vs. NCBI nr
Match: KAA0055955.1 (Myb/SANT-like DNA-binding domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.51e-24
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 48  MEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL 102
           MEVLDFPVV+NDG TGCE NSL WTSEMDHCL RVL++H+I GNKGMLD K NPL
Sbjct: 1   MEVLDFPVVINDGKTGCEENSLRWTSEMDHCLIRVLIEHMILGNKGMLDDKFNPL 55

[Close]

BLAST of Cucsat.G7094 vs. NCBI nr
Match: TYK28160.1 (Myb/SANT-like DNA-binding domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 98.2 bits (243), Expect = 3.56e-24
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 48  MEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL 102
           MEVLDFPVV+NDG TGCE NSL WTSE+DHC  RVLMQH+I GNKGMLD K NPL
Sbjct: 1   MEVLDFPVVINDGKTGCEENSLRWTSEIDHCFIRVLMQHMILGNKGMLDDKFNPL 55

[Close]

BLAST of Cucsat.G7094 vs. NCBI nr
Match: RDX64376.1 (L10-interacting MYB domain-containing protein, partial [Mucuna pruriens])

HSP 1 Score: 100 bits (250), Expect = 3.45e-22
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   WDKTRKIIIAKDSVWDDYIKINPEAKSSRGRVFENYDQFCISFRYYN-------MEVLDF 60
           WD+T+K+IIA DS W+DYI+ + + ++ RGRVFENYDQFCI F ++N        E  D 
Sbjct: 324 WDETKKMIIANDSTWNDYIRTHLDTRTFRGRVFENYDQFCIIFGHFNEPLYWDESEPCDE 383

Query: 61  PVVVN-DGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNP 101
              VN D N   +G  + WTS+MD CL  +L+Q +  GN+   D KL P
Sbjct: 384 ICPVNYDINVKDQGRQMRWTSDMDSCLSAILVQQIKQGNRSRYDYKLKP 432

[Close]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL
Match: A0A0A0LXJ7 (Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G629710 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 5.52e-50
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 20  KINPEAKSSRGRVFENYDQFCISFRYYNMEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCL 79
           KINPEAKS  GRVFENYDQFCISFRYYNMEVLDFPVVVNDG TGCEGNSLGWTSEMDHCL
Sbjct: 10  KINPEAKSFCGRVFENYDQFCISFRYYNMEVLDFPVVVNDGKTGCEGNSLGWTSEMDHCL 69

Query: 80  RRVLMQHVIPGNKGMLDTKLNPL 102
           RRVL QHVIPGNKGMLD KLNP+
Sbjct: 70  RRVLKQHVIPGNKGMLDNKLNPV 92

[Close]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL
Match: A0A5A7UQQ4 (Myb/SANT-like DNA-binding domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00810 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.22e-24
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 48  MEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL 102
           MEVLDFPVV+NDG TGCE NSL WTSEMDHCL RVL++H+I GNKGMLD K NPL
Sbjct: 1   MEVLDFPVVINDGKTGCEENSLRWTSEMDHCLIRVLIEHMILGNKGMLDDKFNPL 55

[Close]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL
Match: A0A5D3DY37 (Myb/SANT-like DNA-binding domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00740 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.73e-24
Identity = 44/55 (80.00%), Postives = 47/55 (85.45%), Query Frame = 0


Query: 48  MEVLDFPVVVNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNPL 102
           MEVLDFPVV+NDG TGCE NSL WTSE+DHC  RVLMQH+I GNKGMLD K NPL
Sbjct: 1   MEVLDFPVVINDGKTGCEENSLRWTSEIDHCFIRVLMQHMILGNKGMLDDKFNPL 55

[Close]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL
Match: A0A371EED3 (L10-interacting MYB domain-containing protein (Fragment) OS=Mucuna pruriens OX=157652 GN=LIMYB PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 1.67e-22
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 0


Query: 1   WDKTRKIIIAKDSVWDDYIKINPEAKSSRGRVFENYDQFCISFRYYN-------MEVLDF 60
           WD+T+K+IIA DS W+DYI+ + + ++ RGRVFENYDQFCI F ++N        E  D 
Sbjct: 324 WDETKKMIIANDSTWNDYIRTHLDTRTFRGRVFENYDQFCIIFGHFNEPLYWDESEPCDE 383

Query: 61  PVVVN-DGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNP 101
              VN D N   +G  + WTS+MD CL  +L+Q +  GN+   D KL P
Sbjct: 384 ICPVNYDINVKDQGRQMRWTSDMDSCLSAILVQQIKQGNRSRYDYKLKP 432

[Close]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL
Match: A0A2N9FX33 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.73e-21
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 1   WDKTRKIIIAKDSVWDDYIKINPEAKSSRGRVFENYDQFCISFRYYNMEVLDFPV----V 60
           WD+ +K+IIA DS+WDDY+K +P+A+  R R  +NYDQ  I F  YN      P+    V
Sbjct: 263 WDEMQKMIIASDSIWDDYVKTHPDARIFRNRFIQNYDQLYIIFGNYNETREPIPIDASPV 322

Query: 61  VNDGNTGCEGNSLGWTSEMDHCLRRVLMQHVIPGNKGMLDTKLNP 101
              G    +G ++ WT EMD CL +VL++ VI GNK  LD K  P
Sbjct: 323 QCGGKARDQGKNMRWTYEMDRCLGKVLVEQVILGNKNKLDNKFKP 367

The following BLAST results are available for this feature:

BLAST of Cucsat.G7094 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G7094 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66565.1	1.14e-49	92.77	hypothetical protein Csa_007513 [Cucumis sativus]	[more]
XP_031739652.1	4.80e-30	92.73	uncharacterized protein LOC116403204 [Cucumis sativus]	[more]
KAA0055955.1	2.51e-24	80.00	Myb/SANT-like DNA-binding domain protein [Cucumis melo var. makuwa]	[more]
TYK28160.1	3.56e-24	80.00	Myb/SANT-like DNA-binding domain protein [Cucumis melo var. makuwa]	[more]
RDX64376.1	3.45e-22	45.87	L10-interacting MYB domain-containing protein, partial [Mucuna pruriens]	[more]

BLAST of Cucsat.G7094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXJ7	5.52e-50	92.77	Myb_DNA-bind_3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G629...	[more]
A0A5A7UQQ4	1.22e-24	80.00	Myb/SANT-like DNA-binding domain protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3DY37	1.73e-24	80.00	Myb/SANT-like DNA-binding domain protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A371EED3	1.67e-22	45.87	L10-interacting MYB domain-containing protein (Fragment) OS=Mucuna pruriens OX=1...	[more]
A0A2N9FX33	2.73e-21	44.76	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19734 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46929	EXPRESSED PROTEIN	coord: 1..43
None	No IPR available	PANTHER	PTHR46929:SF12	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..43
None	No IPR available	PANTHER	PTHR46929:SF12	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 59..101
None	No IPR available	PANTHER	PTHR46929	EXPRESSED PROTEIN	coord: 59..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G7094.T1	Cucsat.G7094.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding