Cucsat.G6757 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G6757
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Ribosome biogenesis protein BRX1-like
Location	ctg1502: 1660151 .. 1661875 (-)
RNA-Seq Expression	Cucsat.G6757
Synteny	Cucsat.G6757

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTTCTGAAGGTGATATTCTCAAATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTGGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATGTAATATAGTTGAAACAAGTTGTTGTAGCTTTTTGTAAAATATATTGTTATGTCTATACATGGTTAGGTAGTTTGCAGTATAACTTATCACCCAGTAACCAAATGTTTTTTGTTTTTATTTATTTAGTTTTTCTTCCCTTTAGAATTTTTGGCAGTTTAACTTGTGATTGATTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGGTTAGAACCTTTTCATTGCACTGTCGTAATCTGGAATTTTTAAGGTACAATGTTTTCTAATTTTTATTTTTAATTAGATATAGGATGATAACATTTTGGTTTTATTCTTGTGGTGTATAACTTATAAGGATGTTTTAACTATCCTTTTGCTTTTCATTATATTACTTTCCTATATGGCCTTCTCATCATGTTTGTACATTGCGATCATATTTTTCCACTCATTGATATTTTTTTCTCTAATTCCAGTGCAGAAAACATAAAGATCTTTATCTATGTATGGCAAAGTGCCCTAGTGGGCTATCTGTGAAGTTTTTAGTTAATGCCATTTGTTTTCTCTATTGTTGATGACCATATCTGGTTCTGGAATTACCAGGTATGCTTTATTTATTTCCTACTTGCTACAGAATTTAATACTAACCATGATCATGCTTTATTTATAACCATCACTCCGTTAGCAACACCACTTGAGGAACAATGCGTGTTTTTAGTGAAGTACGTTAAGGTATATATAGATAAATGTCAGAAGTGTCGTTCTTAAGATATGAGGCATACAATCGTCATTAGGAAAGGAATTTGGCATGGCAAAAAATTAATTGATTTGAAGAGTTTGAGATTAAGCAGATTTTGGGGAATAGTTTTTAGGAGTCCTAGTTGGGGATCTTGCTATTTTTCTTTCTTATGTCAATGATTTCATTGTTTTTCTAGTTCACTGTATACATTTCCATATAATTGATTGTTATCCTTTAAACTTACATGTTCAATTTTCCATCAACTGTTGGTATGAGAACCCACTTTATGTATCGCCAAACCAGGTTAGATTGATTGTCCAACTTTTTGATCATTTGGGATTACACTTCTTCACACTATTATTTAATGATCGTTTGCCTAATGTAGTCCTCATGTGCTTCTTTTCATTTCATGGAATCAAGTGTTGAAGTTCTTGTTTGTGTTCTGTATTTTGTTGAGACATTGATTTAGTTACTCATTGACTGTACGTATGTGTTATGGATACTTATATTCATGTTGTCTTTGTAGGTTCAACTGGAGTCGACAACTTCATGAGTTTTCTTTCAAAGAACATTTCCAGAGACGAACATTCTCGGTTGGTCGTTTATGCTTCTACAGAAAATCTTGTTAGATGTATTATAATGCTATTTAAAATATTTTTTGATTAAGGGCTAGTATTTCGTACATGTGGATTATTGAAACTTGTATTAAGATGTACAAATATTATAAATCGTATTATAGTGTATATATATTAAAGTGTTGGCTATTTTTTTG

Coding sequence (CDS)

ATGGCAAAGAAGAGGAAGCATAGTGAGTCTTTGCCGACGGTATCAGTTAAGAAGGACGATGATGCTCCGGAGAGACCTAAGCGGACACTCATGGGCTGGAAAGACAAAAAAGTGACAAAAGAGAGTGAAGTTGGTTCTGATCATGCTGTTTTTGGAAATAAAGAAAAGGTTCTCATCACGTGTTCCCGTCGAATCAATTTTAGGTATTGGCATTTGATGTTGAATATGGTATCACTTTTGCCACATTGTAAGAAGGATAACAAGGTGGAGTTGAGGTCCAGCAAGGGTGCAACACTGAATGAGCTGGTTGAGCTCAAAGGTTGTTCTTCCAGCCTATTTTTCGAGGTTAGAACCTTTTCATTGCACTGTCGTAATCTGGAATTTTTAAGGTACAATGTTTTCTAA

Protein sequence

MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFEVRTFSLHCRNLEFLRYNVF

Homology

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BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot
Match: Q9LE16 (Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-1 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 5.2e-51
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VF NKEKVL+T
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKD+KVE +SS+GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 143
           DLY+ M K P G SVKFLVNA+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAV 140

[Close]

BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot
Match: Q9C928 (Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BRIX1-2 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 3.3e-45
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFGNKEKVL 60
           M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRI+FRY  LMLN+VSLLPHCKKD+KVE +SSKGATLNEL+ELK  +S LFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLCMAKCPSGLSVKFLVNAI 143
           HKDLY+ M K P+G SVKFLV A+
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAV 144

[Close]

BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot
Match: Q08235 (Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=BRX1 PE=1 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-15
Identity = 38/89 (42.70%), Postives = 62/89 (69.66%), Query Frame = 0


Query: 51  FGNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSS 110
           F NK++ L+  SR +N+R+ HL+ ++  LLPH +K+ K++ +      LNE+ EL  C++
Sbjct: 27  FMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDL-QQLNEIAELYNCNN 86

Query: 111 SLFFECRKHKDLYLCMAKCPSGLSVKFLV 140
            LFFE RKH+DLYL ++K P+G ++KF +
Sbjct: 87  VLFFEARKHQDLYLWLSKPPNGPTIKFYI 114

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BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot
Match: P34524 (Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans OX=6239 GN=K12H4.3 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-14
Identity = 42/107 (39.25%), Postives = 69/107 (64.49%), Query Frame = 0


Query: 36  KKVTKESEVGSDHAVFGNKEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSK 95
           K+ T+E+   ++  ++ N+E+VL+ CSR  + R  +LM ++  LLPH K D+K++ + S 
Sbjct: 46  KQATEETRKRAE--LWTNRERVLVLCSRGADVRTRYLMKDIKDLLPHAKGDSKLDQQKSL 105

Query: 96  GATLNELVELKGCSSSLFFECRKHKDLYLCMAKCPSGLSVKFLVNAI 143
              LNE+ E+K C+  ++FE RK KD YL M+    G S+KFLV+ +
Sbjct: 106 N-VLNEIAEMKNCTKVMYFESRKRKDTYLWMSNVEKGPSIKFLVHNV 149

[Close]

BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot
Match: Q9HGL6 (Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=brx1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 39/86 (45.35%), Postives = 61/86 (70.93%), Query Frame = 0


Query: 54  KEKVLITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLF 113
           K+KVL+  SR + +R  HL+ ++VS++PH KKD+K++ +  +   LNEL EL  C++  F
Sbjct: 42  KQKVLVLSSRGVTYRQRHLLNDLVSMMPHSKKDSKLDSK-DRLYQLNELAELYNCNNIFF 101

Query: 114 FECRKHKDLYLCMAKCPSGLSVKFLV 140
           FE R+ +DLYL +A+ P+G +VKF V
Sbjct: 102 FESRRREDLYLHIARAPNGPTVKFHV 126

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BLAST of Cucsat.G6757 vs. NCBI nr
Match: XP_031744340.1 (ribosome biogenesis protein BRX1 homolog 1-like [Cucumis sativus] >XP_031744341.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucumis sativus] >XP_031744342.1 ribosome biogenesis protein BRX1 homolog 1-like [Cucumis sativus] >KAE8646095.1 hypothetical protein Csa_016319 [Cucumis sativus])

HSP 1 Score: 296 bits (758), Expect = 3.45e-101
Identity = 145/147 (98.64%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVF NKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAICFLYC 147
           DLYLCMAKCPSG SVKFLVNAICFLYC
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAICFLYC 147

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BLAST of Cucsat.G6757 vs. NCBI nr
Match: XP_031736511.1 (ribosome biogenesis protein BRX1 homolog 1-like isoform X1 [Cucumis sativus] >XP_031736512.1 ribosome biogenesis protein BRX1 homolog 1-like isoform X1 [Cucumis sativus] >XP_031736513.1 ribosome biogenesis protein BRX1 homolog 1-like isoform X1 [Cucumis sativus] >KAE8651875.1 hypothetical protein Csa_006418 [Cucumis sativus])

HSP 1 Score: 295 bits (755), Expect = 9.89e-101
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVF NKEKVLIT
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLIT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSNKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAICFLYC 147
           DLYLCMAKCPSG SVKFLVNAICFLYC
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNAICFLYC 147

[Close]

BLAST of Cucsat.G6757 vs. NCBI nr
Match: XP_011659901.2 (ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743378.1 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743380.1 ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus])

HSP 1 Score: 275 bits (703), Expect = 2.49e-90
Identity = 136/141 (96.45%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNA 141
           DLYLCMAKCPSG SVKFLVNA
Sbjct: 121 DLYLCMAKCPSGPSVKFLVNA 141

[Close]

BLAST of Cucsat.G6757 vs. NCBI nr
Match: XP_008450669.1 (PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450671.1 PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >TYK10224.1 ribosome biogenesis protein BRX1-like [Cucumis melo var. makuwa])

HSP 1 Score: 257 bits (657), Expect = 2.31e-83
Identity = 127/142 (89.44%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. NCBI nr
Match: XP_022159792.1 (ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia])

HSP 1 Score: 256 bits (653), Expect = 9.62e-83
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSE+L +V+VKKD DAPERPKRTLMGWKDK+V KESE GSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSEALASVAVKKDSDAPERPKRTLMGWKDKEVGKESESGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL
Match: A0A1S3BQS3 (ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE=3 SV=1)

HSP 1 Score: 257 bits (657), Expect = 1.12e-83
Identity = 127/142 (89.44%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL
Match: A0A5D3CG95 (Ribosome biogenesis protein BRX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003710 PE=3 SV=1)

HSP 1 Score: 257 bits (657), Expect = 1.12e-83
Identity = 127/142 (89.44%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSE++PTVSVKKD++A ERPKRTLMGWKDK+VTK+SE GSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSETVPTVSVKKDENALERPKRTLMGWKDKEVTKKSEAGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL
Match: A0A6J1E0T2 (ribosome biogenesis protein BRX1 homolog 1-like OS=Momordica charantia OX=3673 GN=LOC111026105 PE=3 SV=1)

HSP 1 Score: 256 bits (653), Expect = 4.66e-83
Identity = 127/142 (89.44%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           MAKKRKHSE+L +V+VKKD DAPERPKRTLMGWKDK+V KESE GSDHAVF NKEKVL+T
Sbjct: 1   MAKKRKHSEALASVAVKKDSDAPERPKRTLMGWKDKEVGKESESGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RSSKGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL
Match: A0A6J1EW75 (ribosome biogenesis protein BRX1 homolog 1-like OS=Cucurbita moschata OX=3662 GN=LOC111437121 PE=3 SV=1)

HSP 1 Score: 248 bits (633), Expect = 4.86e-80
Identity = 122/142 (85.92%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           M KKRKHSE+LP VSVKKD+ APERPKRTL GWKDK+V KE+E GSDHAVF NKEKVL+T
Sbjct: 1   MPKKRKHSETLPIVSVKKDEGAPERPKRTLTGWKDKEVAKETESGSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLN+VSLLPHCKKDNKVE RSSKGATLNELVELKGCSS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNVVSLLPHCKKDNKVESRSSKGATLNELVELKGCSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL M+KCPSG SVKFLVNA+
Sbjct: 121 DLYLWMSKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL
Match: A0A6J1HZ18 (ribosome biogenesis protein BRX1 homolog 1-like OS=Cucurbita maxima OX=3661 GN=LOC111467904 PE=3 SV=1)

HSP 1 Score: 246 bits (629), Expect = 1.85e-79
Identity = 123/142 (86.62%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           M KKRKHSE+LP VSVKKDD APER KRTL GWKDK+VT +SE  SDHAVF NKEKVL+T
Sbjct: 1   MVKKRKHSETLPAVSVKKDDVAPERSKRTLTGWKDKEVTTKSESDSDHAVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKDNKVE RS+KGATLNELVELKGCSSSLFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDNKVESRSTKGATLNELVELKGCSSSLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 142
           DLYL MAKCPSG SVKFLVNA+
Sbjct: 121 DLYLWMAKCPSGPSVKFLVNAV 142

[Close]

BLAST of Cucsat.G6757 vs. TAIR 10
Match: AT3G15460.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 201.8 bits (512), Expect = 3.7e-52
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDDAPERPKRTLMGWKDKKVTKESEVGSDHAVFGNKEKVLIT 60
           M +KRKHSE++    VK  D APERP+RTL+GWKDKK   E+   +  +VF NKEKVL+T
Sbjct: 1   MGRKRKHSETVTAAPVK--DSAPERPQRTLLGWKDKKEDAENSKPAYASVFRNKEKVLVT 60

Query: 61  CSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRKHK 120
           CSRRINFRY HLMLNMVSLLPHCKKD+KVE +SS+GATLNEL+ELKG SS LFFECRKHK
Sbjct: 61  CSRRINFRYRHLMLNMVSLLPHCKKDSKVEAKSSRGATLNELIELKGSSSCLFFECRKHK 120

Query: 121 DLYLCMAKCPSGLSVKFLVNAI 143
           DLY+ M K P G SVKFLVNA+
Sbjct: 121 DLYMWMVKSPGGPSVKFLVNAV 140

[Close]

BLAST of Cucsat.G6757 vs. TAIR 10
Match: AT1G52930.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 182.6 bits (462), Expect = 2.3e-46
Identity = 95/144 (65.97%), Postives = 112/144 (77.78%), Query Frame = 0


Query: 1   MAKKRKHSESLPTVSVKKDDD-APERPKRTLMGWKDKKVTK-ESEVGSDHAVFGNKEKVL 60
           M +KRKHSE+     VKK D+ AP+RPKRTL+GWKDK   + E       + F NKEKVL
Sbjct: 1   MGRKRKHSETEAPAPVKKSDEPAPDRPKRTLLGWKDKSEGEAEKAKALTSSGFKNKEKVL 60

Query: 61  ITCSRRINFRYWHLMLNMVSLLPHCKKDNKVELRSSKGATLNELVELKGCSSSLFFECRK 120
           +TCSRRI+FRY  LMLN+VSLLPHCKKD+KVE +SSKGATLNEL+ELK  +S LFFECRK
Sbjct: 61  VTCSRRISFRYRSLMLNIVSLLPHCKKDSKVEAKSSKGATLNELIELKNSNSCLFFECRK 120

Query: 121 HKDLYLCMAKCPSGLSVKFLVNAI 143
           HKDLY+ M K P+G SVKFLV A+
Sbjct: 121 HKDLYMWMVKSPNGPSVKFLVKAV 144

The following BLAST results are available for this feature:

BLAST of Cucsat.G6757 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LE16	5.2e-51	71.13	Ribosome biogenesis protein BRX1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q9C928	3.3e-45	65.97	Ribosome biogenesis protein BRX1 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=BR...	[more]
Q08235	2.7e-15	42.70	Ribosome biogenesis protein BRX1 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
P34524	1.0e-14	39.25	Ribosome biogenesis protein BRX1 homolog OS=Caenorhabditis elegans OX=6239 GN=K1...	[more]
Q9HGL6	3.0e-14	45.35	Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]

BLAST of Cucsat.G6757 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744340.1	3.45e-101	98.64	ribosome biogenesis protein BRX1 homolog 1-like [Cucumis sativus] >XP_031744341....	[more]
XP_031736511.1	9.89e-101	97.96	ribosome biogenesis protein BRX1 homolog 1-like isoform X1 [Cucumis sativus] >XP...	[more]
XP_011659901.2	2.49e-90	96.45	ribosome biogenesis protein BRX1 homolog 1 [Cucumis sativus] >XP_031743378.1 rib...	[more]
XP_008450669.1	2.31e-83	89.44	PREDICTED: ribosome biogenesis protein BRX1-like [Cucumis melo] >XP_008450670.1 ...	[more]
XP_022159792.1	9.62e-83	89.44	ribosome biogenesis protein BRX1 homolog 1-like [Momordica charantia]	[more]

BLAST of Cucsat.G6757 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BQS3	1.12e-83	89.44	ribosome biogenesis protein BRX1-like OS=Cucumis melo OX=3656 GN=LOC103492188 PE...	[more]
A0A5D3CG95	1.12e-83	89.44	Ribosome biogenesis protein BRX1-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1E0T2	4.66e-83	89.44	ribosome biogenesis protein BRX1 homolog 1-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1EW75	4.86e-80	85.92	ribosome biogenesis protein BRX1 homolog 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HZ18	1.85e-79	86.62	ribosome biogenesis protein BRX1 homolog 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Cucsat.G6757 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15460.1	3.7e-52	71.13	Ribosomal RNA processing Brix domain protein	[more]
AT1G52930.1	2.3e-46	65.97	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR13634:SF3	RIBOSOME BIOGENESIS PROTEIN BRX1 HOMOLOG 2	coord: 1..118
IPR026532	Ribosome biogenesis protein BRX1	PANTHER	PTHR13634	RIBOSOME BIOGENESIS PROTEIN BRIX	coord: 1..118
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 55..134 score: 8.581433

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G6757.T1	Cucsat.G6757.T1	mRNA
Cucsat.G6757.T2	Cucsat.G6757.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006364	rRNA processing
molecular_function	GO:0019843	rRNA binding