Cucsat.G631 (gene) Cucumber (B10) v3

Overview
NameCucsat.G631
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPentatricopeptide repeat-containing protein
Locationctg1: 12164240 .. 12169995 (-)
RNA-Seq ExpressionCucsat.G631
SyntenyCucsat.G631
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGACTGACGCTTTGTTAATTCGTTCATTCTTCACTCTTTTTCTAATATCCTCTATTTGGTTATCTCCCATCTTTGTAGCGGGGGGCTCACAGCTACACATCGCTACCCAACCACCCACAATGTAACTCTTTTTCTTCCCTTCTTCTTTTGTGCAGATATGTAAGTATGCTTTCATTTGCAAACTGGGCATTATCGCATTTACAAAATCTTTAAAGCTGAAAATGGGAAGCCATGGATATTACTTACCTAGAATTCCTATCACTAGACGATTCAGAACACACCCTTTTGTTTTTATTCCCAGCTCGCTACCATTTTGCTCTGATTCTACTTCTACTTCTACTTCTACCCAGAACCAGAACAATTTTAATCAAATTGAACACGTTTCTAGTCTTCAGGAAGTAACATTGAGCACCACCAGCAACCAACATTCTAACCCTTTAGAACCTTTGTGCCTTGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGGGCGTACGGGTGCTGCCGAGAGCCTCATTAAGTCGGTAATTCTCTCCAAATCTCCTTTCTCATCACCTTCTGATCTCATTCCGCTTTTTTCTGTCCATGCTCCATCCTTGAATCATGTTTTTTCAAAGACGTTGTTTATGGTGTTTTTGGATCTCAAAATGACTGATGATGCTATAAGATTATGCACCTCAATGAAGAAAAATGGTGTTGTTCCTGCCGTGGTGGATACCCTTAATGTTTTATTTAAACTTTTAATGTCTTCAAAAGAGTTTAAGAAAACGCTTGACTTCTTTTCTGAACTTGTTGAATCTGGTATTCTACCAGATAAATTCATGTATGGTAAGGCAGTTGAGGCCGCGATGAAACTAGGGAACATGAATAAGGCATGTGATCTGGTGTGTTGTATGAAGAAGGTAGGGATTGATCCTACTTTCTTTGTTTATAATGTGTTAATCTCTGGCTTTTGCAAAGAAAAGAAAATGGTTGATGCACAAAAGATATTTGATGAAATGATCACCAAAAACATGTCCCCGAATTTGGTTACTTATAATACAATTATCAATGGATATTGTAAGGCGGGAAAACTGGATAAAGCTTTTAGTTTGAAGGAGAGGATGAAGCTTGAAAATTTGGGACCTAATCTTCTAACATACAACTCTTTGCTAAGTGGGCTCTGTAAGGCAAGGCAGATGGAAGAAGCCAAAAAGTTATTGGTTGAGATGGAAACTCATGGGTTTGCACCAGATGGATTTACCTATAGCATACTTTTTGATGGGTATCTGAGGTCTGGCGACGGTGAAGCCTCAGTGGTTCTGTTTGAAGAAGCAGTTAAAAAAGGGGTGAGAATAAATGAATACACTTGTTGTATTTTGTTGAATGGGTTATGTAAAGATGGTAAGGCAGAAAAAGCTGAGGAATTTCTGACGAAGTTAATGATGAATGGATTGGTTCCGAATGAAATAATTTTTAATGTACTAGTGGATGGGTATTGCCGAAAAGGAAATATTGATGGTGCTATATCAACCATCCAAAGGATGGAAAATCAAGGCTTAACACCCAATTGCATCACTTTTAATTCGTTGATCCATAAATTTTGTGAAATAAAAGAGATGGACAAGGCAGAGGAGTGGTTGAGAAAGATGATGGAGAGGGAAGTTTGCCCTAGCATTGAAACCTATAACACCCTTCTTGATGGTTATGGACGGATGCGTCTTTTTGATAGATGTTTCCAAGTTCTCGAAGAAATGGAAAGTAAAGGGATAAAGCCAAATGTTGTAAGCTATGGAGCTCTCATTAACTGTCTGTGCAAAGTTGGTAGATTTGTTGAAGCTGAAGCAGTTTTTGCTGATATGGATGGAAAAGGAGTTTTTCCAAATGCTCAAATTTATAATATGCTGATTGATTGTAATTGCACATCAGGGAAGATGCAAGATGCTTTCAAGACTTTTGATGAAATGATTGATAGGGACATCACCCCAACCCTTGCAACATACAATTCACTCATCAATGGATTGTGCAAGAAAGGGAGGGTGATTGAAGCAGAAGAGTTAGCCAACCAAATTACAAAGAGTGGTCTTACACCTGATGTGATCACATACAACTCCCTTATCTCTGGTTATTGTAGTTCTGGGAACTCTAAAAAAGGCCTCGAGTTATATGAAACTATGAAAAAGCAAGGCATCAATCCTACATTAATAACCTATCATCTTTTAATATCCGGACGTAGCAAGGTTGGTCTAGATACTATGGAGGAACTGTTCAATGAAGTGTTACACAGGGATCTTGCTCTAGATAAAGTTGTATATAATGGACTGATTTTTTGCTATGTAGAAAACGGAGATGTTCAGAAGGCATTTGTTTTGTACAATAAGATGATAGTTGAAGGAGTCCAACTAGACAAGATAACTTACAACAGCTTGATTTTAGGATGCTCCAGAGGTGGTAAGGTTACAGAAGTAAGGAAACTTGTCGAGGATATGAAGGCTAGAGGGTTGACTCCTAAGGCTGACACTTACAATATCTTAGTTAAGGGACTTTGTGAATTTGGTGATTATAGTGAGGCACATACATGGTATAAAGAGATGTTTGAAAACAACTTATTGTTAAATTCCCCTGTTCGCAATCAACTCATTGATGGTCTCAAGAGAGAGGGGAGGTTTCAGGAAGCGCAACTTATTTTGTCTGAGACGTATGTCTGAATTTTGAGCAATGAGCCTTCTGCATCTATGACTATGACTATGACTGTGTGTAACAACTCTCAACTGAGAGTTCGCACTTAGATTACTTAGGAAAAATACAGTGGGCTCCTTTCAAGAGGGAGTTCCTCTCCAAGTGCAGTACCAAAATATCACAGACCAAAAAACATAAGTCCCACTACAACACAAAAGTAATATATATAACAGTACACGTCACCCAACCCTACTTAACACTGGTTCGGTCTACCCCTTCTCACATATGTGTGTATGATGGGTGGTCAAAGACTATGTAGTTTTAACATTTGCTTTAAAGAACCTGTGAACACATATGGCTATCACTGTTGAAAAGTGTTTCTACAGGTGGATTATGTTGCTATGGTTCATGGCAACACAATCCAACGTCTTATATCTGATGACACAGCTGCCGAGTGACTTGGTAAGCAGGGTCCCTCTTCTTAGCTTTGATTTTGTACTGACTCATCAACCTTATCATATATCTTCTCTGTGATTCAGACAAATGAGCTGTATAGACTTCCTGCTGTGACATATTACTTGATGTATGCTTGGATAAGCCCATATGTCAAATTTTACATGCCTTGGTTACTGATTGATTCATAAGGATGTTCCGTGCTGCATTGAGTCATTTATCAAATTCATTTACCTTAATCTTTAAAACCGGTTCTTAGATTGATTAGTGATACCTTTAGCCCAACATGCATCAATCTTAAAACACTGGTTATTTCTCAAATCCTTTTTATCTCAAATTGGATATCTTTGATGTAATCCCCTAGCGTAATGACATTTTCCCCCTTATTTCATTTATCAATGAAATGTTTTCCAATAAAAAAAATGTTGTGGCTGCAACAGAGTACAATAACATTTACTCGAGGAGCATCTTTCAAGCATTTAGTAAAATTTGATTTGCTGTAGTGTTTGATCTTAAAAGGAGTACAGTGATTTCTTGACTGTAAATATCGTAGTCTTGAAGTTAAGTTGATTACTTATTAGCATGGTGAGAAACTTGGATTTAGATAATGGATAAAGGTTGGGGTATACATGGTTGGGTGGACTTGGGTTGAGAGTGTTTTCTTGACCAACCCAAAATTTGAGATGGCTGGGTTGACAACCCTAAATACCCAAAAAAAGTTTCCAACCCAATTCAATCGAAAAAATTTGGGTTGGGTTGGTGGGTTATAGTTTTTTTTTTTTCTTTTTAACTTTTAGTTTTAAGTGGGTAAATTTATTGATAACATGTGATTAACAACAAAAATCTCATTAAATTCAAATATAAAATACTGGGTACATATATATATATATATATATATATATATATATATATATATATATATATATGATATTTAATACAAATTAATCTTTAAACAAAGACAAATATTATAACAATTCTAAAAAAATATATTAAAATTCACTAATTAATCAATCAAAGTTAGTCAAAATTTGAACAAAGAAAAATAGATATATATTTTTTTATTTATATATAATTCTGGTTGGATTGAGTGAAATCAAATTTCTTTTTAGCTAACTTGTCACCTATTCCAACCCAACAAGGTAGAAAATGTTTAACCCATCCCAACCCTTACATTTGGGTTAGATAGTTTGGGTTGTTTGTGTTGAGTTATTTGAACACTCTAGATAAAGTAATTACAATTTGTGTGATTGACAATAATGGATTGAGAGGCCTAAGATTTAGATAAAGTAATGACAATTTGTGTGATTGACAATATTGGATTGAGAGGCCTAAGATTTAGAATATGAAGTTGAATCTAAAGAGATATGAGCTTGGGAAGTGTCATGAAATGAAATTGACTGAAGGCTGTTTTGCTTTGAATTATTGGACCTGCTTCTGCCAGTTTTCAATTGCTAGTAAATTACTTATAGTTTGTTTGGATTGAATTTGTATGTACTTAGAAAAAAATAAAAATGTTTCTACATGCAATAAAGTGAATTTATGAACTTAAAAACTCAATATCCAAACATGCCCTTAATCATTTTACACGAGTCATATTCCCTCTTATTTAGGCTTCTAAATGTGGATAAGCTTTATCAAGTTTGGTTTTTCAGGAGGAACAACTAGTTTACAACTTGTATATTAATGTTCATTTGTGTTTCTTTTTTTTTGTGTGTGGAGCTACAGATGTTTTGATAGCATCTATCATGGTGGTTGTGGCCGTGTTTGTGAAGACACCAGTTGCCAACATTGTACCACATGCATTTAAACATAGTAAGGGGACTTATTTTCTGCTAAGCTTATACCTAGTGATTTTCTTGAAAATTTTAGTTTCATATTCTTTTGATCTGATTATTTTACTCAACTATTAGGTTGCTGTGGTGTTTGCTTGAATTGGAGAATTGAATTTGTTCTTTGCTGTGCTCTCCGAATCTTCATCTCATAGGAAAAGAAAGACGATAGGTTTTTACGTAGCACATATTTGGTTCTCTTGGTGTGAAATCACAAGCAGTAAATATTGTGATCGAAAGTTGTTGAGGCTTTCAATGAAACCGAATAATTTTTCCGTTCTCACACCAATTTTGTAGTATTAGCTTAGTAACAGGTCGATCTGAGATAACCAACCGCTTTTTCTTTAAGACGAACCACACAAATTATGAGTGAATCAAAGAAAAAAAGGACAAAGAACACAAATCTAAAGATGATGGTTGAAAGTTATCAACGAAATAAAACACAACGGTGTTGTGGCACCCTAGGGCAGTGTTGTGGGACCAAGCCGCGCGCGAATAGTTCCATTAAACTTCAGAGAGTCATGGTGCCCAAGTGCACTGTTGCGACGTTGTGTGTCACAGTCATGCTTGTTCAAGGCATGTTGCATGTGGTCGTATGATCGCTCTGACTCTTCGCATTGTCTTTTTTTAATTTTCAAATACTTTTATTAAGTATGTCATCTCACACATTAACGTACGCGAGCCTTCCCGTTCCCTTTTTGTTCAGAATATGCTATATGGGGATAAGATTTATCATTGTACTTTTATACCCACGAGTTAAAAGATATAAAGTTTTTGTCCCTTATTGCTTATAGCCTTACAATGTCATCTCT

Coding sequence (CDS)

ATGGGAAGCCATGGATATTACTTACCTAGAATTCCTATCACTAGACGATTCAGAACACACCCTTTTGTTTTTATTCCCAGCTCGCTACCATTTTGCTCTGATTCTACTTCTACTTCTACTTCTACCCAGAACCAGAACAATTTTAATCAAATTGAACACGTTTCTAGTCTTCAGGAAGTAACATTGAGCACCACCAGCAACCAACATTCTAACCCTTTAGAACCTTTGTGCCTTGAGTTAGTTCAAAAGCTTCGGATTTTACTTCAACAGGGGCGTACGGGTGCTGCCGAGAGCCTCATTAAGTCGATGTTTTGA

Protein sequence

MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEVTLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSMF
Homology
[Close]
BLAST of Cucsat.G631 vs. NCBI nr
Match: KGN57298.1 (hypothetical protein Csa_010291 [Cucumis sativus])

HSP 1 Score: 199 bits (505), Expect = 4.22e-57
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQ EHVSSLQEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQFEHVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTTS+QHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKS+
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSV 103

[Close]
BLAST of Cucsat.G631 vs. NCBI nr
Match: KAA0033576.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK30333.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 1.11e-44
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRI ITRRFRTHPF+FIPSS PF SDS    TST NQNN NQ+E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFRTHPFIFIPSSQPFSSDS----TSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTT+NQHSNPLEP CLELVQKLR+LLQQGRT AAESLIKS+
Sbjct: 61  TLSTTNNQHSNPLEPWCLELVQKLRVLLQQGRTCAAESLIKSV 99

[Close]
BLAST of Cucsat.G631 vs. NCBI nr
Match: XP_008439118.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucumis melo])

HSP 1 Score: 164 bits (415), Expect = 1.52e-44
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRI ITRRF THPF+FIPSS PF SDS    TST NQNN NQ+E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSDS----TSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTT+NQHSNPLEPLCLELVQKLR+LLQQGRT AAESLIKS+
Sbjct: 61  TLSTTNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSV 99

[Close]
BLAST of Cucsat.G631 vs. NCBI nr
Match: XP_038880496.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Benincasa hispida] >XP_038880500.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Benincasa hispida] >XP_038880503.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Benincasa hispida] >XP_038880509.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Benincasa hispida])

HSP 1 Score: 147 bits (370), Expect = 2.24e-38
Identity = 79/103 (76.70%), Postives = 84/103 (81.55%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYL RIPITRRFRT+ F FIP+S+PFCSDS    TSTQNQN  NQIE V S QEV
Sbjct: 3   MGSHGYYLTRIPITRRFRTYHFSFIPTSIPFCSDS----TSTQNQNKPNQIEQVLSHQEV 62

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTT  QHSNP EPLC ELVQK RILLQQ RTGAA+ LIKS+
Sbjct: 63  TLSTTKKQHSNPSEPLCHELVQKFRILLQQERTGAAKRLIKSV 101

[Close]
BLAST of Cucsat.G631 vs. NCBI nr
Match: XP_022984191.1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984192.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima] >XP_022984193.1 pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita maxima])

HSP 1 Score: 129 bits (324), Expect = 3.82e-32
Identity = 72/103 (69.90%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSDST        QNN NQIE V+S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDST--------QNNPNQIEQVTSHQEV 77

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           T STT NQH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+
Sbjct: 78  TSSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSI 112

[Close]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match: A0A0A0L693 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 2.04e-57
Identity = 100/103 (97.09%), Postives = 102/103 (99.03%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQ EHVSSLQEV
Sbjct: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQFEHVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTTS+QHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKS+
Sbjct: 61  TLSTTSSQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSV 103

[Close]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match: A0A5A7SUA7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1044G00050 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 5.37e-45
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRI ITRRFRTHPF+FIPSS PF SDS    TST NQNN NQ+E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFRTHPFIFIPSSQPFSSDS----TSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTT+NQHSNPLEP CLELVQKLR+LLQQGRT AAESLIKS+
Sbjct: 61  TLSTTNNQHSNPLEPWCLELVQKLRVLLQQGRTCAAESLIKSV 99

[Close]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match: A0A1S3AYN1 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103484008 PE=4 SV=1)

HSP 1 Score: 164 bits (415), Expect = 7.38e-45
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MGSHGYYLPRI ITRRF THPF+FIPSS PF SDS    TST NQNN NQ+E VSSLQEV
Sbjct: 1   MGSHGYYLPRITITRRFGTHPFIFIPSSQPFSSDS----TSTPNQNNPNQVEQVSSLQEV 60

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLSTT+NQHSNPLEPLCLELVQKLR+LLQQGRT AAESLIKS+
Sbjct: 61  TLSTTNNQHSNPLEPLCLELVQKLRVLLQQGRTCAAESLIKSV 99

[Close]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match: A0A6J1J4J9 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111482583 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.85e-32
Identity = 72/103 (69.90%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSDST        QNN NQIE V+S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDST--------QNNPNQIEQVTSHQEV 77

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           T STT NQH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+
Sbjct: 78  TSSTTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSI 112

[Close]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match: A0A6J1E4W4 (pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111430768 PE=4 SV=1)

HSP 1 Score: 129 bits (324), Expect = 1.85e-32
Identity = 72/103 (69.90%), Postives = 76/103 (73.79%), Query Frame = 0 

Query: 1   MGSHGYYLPRIPITRRFRTHPFVFIPSSLPFCSDSTSTSTSTQNQNNFNQIEHVSSLQEV 60
           MG HGYYL RIP+ RRFRT    FIPSS PFCSDST        QNN NQIE V S QEV
Sbjct: 18  MGRHGYYLSRIPVIRRFRTQYLAFIPSSNPFCSDST--------QNNPNQIEQVPSHQEV 77

Query: 61  TLSTTSNQHSNPLEPLCLELVQKLRILLQQGRTGAAESLIKSM 103
           TLS+T NQH N  EPLC ELVQKLRILLQQ RTGAA+ LIKS+
Sbjct: 78  TLSSTRNQHPNHPEPLCHELVQKLRILLQQERTGAAKRLIKSI 112

The following BLAST results are available for this feature:
BLAST of Cucsat.G631 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G631 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN57298.14.22e-5797.09hypothetical protein Csa_010291 [Cucumis sativus][more]
KAA0033576.11.11e-4483.50pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK30333... [more]
XP_008439118.11.52e-4483.50PREDICTED: pentatricopeptide repeat-containing protein At5g12100, mitochondrial ... [more]
XP_038880496.12.24e-3876.70pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Benincasa ... [more]
XP_022984191.13.82e-3269.90pentatricopeptide repeat-containing protein At5g12100, mitochondrial [Cucurbita ... [more]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6932.04e-5797.09Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G177910 PE=4 SV=1[more]
A0A5A7SUA75.37e-4583.50Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3AYN17.38e-4583.50pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucumis ... [more]
A0A6J1J4J91.85e-3269.90pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucurbit... [more]
A0A6J1E4W41.85e-3269.90pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Cucurbit... [more]
BLAST of Cucsat.G631 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 398..471
e-value: 4.0E-18
score: 67.6
coord: 472..543
e-value: 1.0E-22
score: 82.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 139..299
e-value: 6.9E-37
score: 129.5
coord: 669..821
e-value: 1.3E-36
score: 128.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 561..668
e-value: 2.8E-33
score: 116.8
coord: 300..393
e-value: 4.2E-27
score: 96.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 348..387
e-value: 4.3E-8
score: 33.2
coord: 478..527
e-value: 8.7E-14
score: 51.5
coord: 618..664
e-value: 3.8E-14
score: 52.6
coord: 268..317
e-value: 2.0E-17
score: 63.1
coord: 724..770
e-value: 3.2E-12
score: 46.4
coord: 408..456
e-value: 1.8E-11
score: 44.1
coord: 548..597
e-value: 4.4E-15
score: 55.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 690..720
e-value: 1.4E-5
score: 25.0
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 230..261
e-value: 1.2E-9
score: 37.7
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 271..304
e-value: 4.7E-10
score: 37.0
coord: 341..374
e-value: 3.1E-4
score: 18.7
coord: 237..269
e-value: 7.5E-8
score: 30.1
coord: 307..339
e-value: 8.7E-10
score: 36.2
coord: 621..654
e-value: 1.2E-9
score: 35.8
coord: 412..445
e-value: 1.0E-7
score: 29.6
coord: 761..793
e-value: 1.2E-6
score: 26.3
coord: 552..584
e-value: 2.5E-6
score: 25.3
coord: 587..620
e-value: 1.0E-7
score: 29.7
coord: 516..550
e-value: 6.7E-9
score: 33.4
coord: 690..723
e-value: 5.3E-7
score: 27.4
coord: 482..515
e-value: 4.2E-10
score: 37.2
coord: 446..479
e-value: 2.5E-7
score: 28.5
coord: 376..410
e-value: 4.8E-7
score: 27.6
coord: 725..757
e-value: 1.2E-6
score: 26.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 304..338
score: 13.449573
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 514..548
score: 12.408249
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 444..478
score: 11.334042
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 619..653
score: 14.151095
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 339..373
score: 10.029647
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 758..792
score: 10.402331
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 723..757
score: 12.638436
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 688..722
score: 10.380408
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 479..513
score: 12.92343
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 409..443
score: 12.287675
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 549..583
score: 11.619036
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 269..303
score: 13.296114
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 234..268
score: 12.002681
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 584..618
score: 12.397287
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 374..408
score: 11.147699
NoneNo IPR availablePANTHERPTHR47932ATPASE EXPRESSION PROTEIN 3coord: 63..819
NoneNo IPR availablePANTHERPTHR47932:SF28PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIALcoord: 63..819
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 350..660

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G631.T2Cucsat.G631.T2mRNA
Cucsat.G631.T1Cucsat.G631.T1mRNA
Cucsat.G631.T3Cucsat.G631.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding