Cucsat.G6239 (gene) Cucumber (B10) v3

Overview
NameCucsat.G6239
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionPhosphorylated adapter RNA export protein
Locationctg1425: 2038801 .. 2043074 (+)
RNA-Seq ExpressionCucsat.G6239
SyntenyCucsat.G6239
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAATATATATATATTTTTCAATAAATAAAAAGAAAAACCCTAAATAATATTTCGTCTTCCTCCTAATGCATCAGTACTGAGCAAAACACCATTTCTTCCTTTCTACCTTTCTCCCTTTTTCCTTCTTCTTCAATCTTCATATCTCCTTCCAAACTTCTCTACTCTAAACCCACGATCCCACGCCCTCTCCCCCGTAGTCTCCATCGCTCTCTCCCTTAAGATTTCCCGTTAAAGCTTCACCGCCACTCCATTAATTCTTCTCCACTTTCTGGGTAAGTTTTATGATTGCATTTGAGGTTTCCCATTTCCATCGCTCTTTCCCTTATGATTTATTGTATCTGCTGCTCTCACTATTCGAGTTCATTTGATTACTGGGAGGCTGTTGACTACACTTATTGTACTTGTTTTGAAGCTTTGATTGTTAAGGATATGGATTGTTTTAGTTTATTTATGCTCAAATTTGTAGTTACCGTATTGAACTAAATCTTGTTACAGTGTTGGCAACTAAATCTTTCATCTTTGTATGAGCTTAATAAGAGACTCTTGATCTCTCCTAGGCCTTGATGTGGGCGCATACTTTTGGAGAAAAGAGAGGAAACAAATGTTTTGACAACCAATTTTGACATTTTACTGTTGAGTAATTTTTATTTCACTGAGCGCCCAAAAGCTATGCAAGTGTTGATTTCATTTCCGTCTTGCTATCCTGATAATTTCAAGTTGCAGTTTATATATGTTCCCTGATATTTTCTCTAGGATGTTTGATTATTTTATGAAATCCTTTGTTTCTCTGAATAAGGAGTGTCTGATTATTTTATATAGTTGATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGACGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAAAGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTACGTGGAATCTTCTAATCATGTTGTATATGCAATTGCATGGAAAAAGAAGCAATATTGCAAGCTTTCTTGAGATGCGTTTTTTGTTTGGAAATCCATTATAGTTTTGCCAAGTAATTGTAGATTTAACAGGACTTTTTACTCTGGTTGCTATGTTATTGTGCTGATTTCCGTGTTTTCTCAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGTCTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTATTATGATTTTCTTGTAACCTGATAAAAGAATATTTTGTTTGATTGAGTGATAAAAAATTATGTCTTATACATTAGTATTAGTTTGAAAACTTCCCTTCTGTTTTTTAAAGTTCTGTTTGAAAGTGAATTGAATTGACCAGCCACTAACCAAACCAACATAATTGAGTTCCATCGGTTTTCCCTTTTGGTTTGCATTCAGCCCCCTAGTGAGTACAACTCATGAATTATTTTACTGTTCACTAACTATGCCTTTGCTCACTACTTTTTGTATCCTCGGTACTTTGCCTAGGGCCACAAGCAATTGCCTTCCTGGTAAAAGTGAATTTCTTTAACTTAAATTTTGAGTTTTGACTGACCTGCCTAGACATGGCCATTCACGTTGGAAATGACTTGTGGGCTTGGGCTCATAAGCAAAGAACAAGACTCATAAGCAAAGTACATCGATTTTGTCCAACATTGGAGAATTTTGAAATACCAAGAGGGTATAAAATACCAAGGTATGTTAGGTGTGAGACTAAAGTATTTTGGTGGTGATAGCATAACTCTATCACCACAAGCGCGCCTTAGTATGTCAGGTCGGATAACCGCGCTTGTGCGAAAAAGAATCAACTTTTTATTTTCTATACGTTTGATTTTATAACTCCTATTTGGCAATTAAACATTTTGCTTTTTACAATTAATATTTTTCTCCGTTTCCTACCTGTTGGAAAACCCTACCTGGCCGTTTTCTTTTCTTCCTCTTTATCTATCATCATCTTAATCCAGATTTGGGTATCCGAAAACCATCTACTCTCTGTTCTTTAATCTTGTTCTTGATCTTGATTCTATTCCTTGTTCCGACGAGTGCACGTCGAAATAAGGAAGCTATGTTAACCTTGAGGAGCAACCGGCATTTGATTGGCACCACGGTTGTGCCAAAATTGCTTTCAAGGTAGTTGTTCGTCACAGCGCAGCAATTCCTTTTGAAATCTTATTAACAACAATTCACTCCAAACTCCAGTAAGTATCATACCACACAGCCACTCTTCATATTTAATCAGTATTATTTCCTACCCTTGCAGATTCTGTTGCTGAAGTCATTTTGCTCCTTTTAACCTTGTTCTCTGAGCTGTGAATCACCATTGCTGGACTACTACATCTGTGCTATATAAGTTGATGCTATTATCCCAGCATATATTGGTTATGATCTCTGTAAGATATTTGTACTTTATTACAAAAAAAACCTTTAGTATTAATCGCAATTTACAATCAATCTTTTCCACCCACTTCCCTGAAAATACTACACCTGATTATTTTCACTGAATCCGGACTTCGTCAAAATGCTCTTGGAAGTTTTAACATGTACATTTAATTGGAATGCCCAAACTAAATTTGCAGCTCAGTTGTGCATGTCCTATCATACTTTTCATCTTGGGGTTTGAGATTTGCTTTCATGCGAACTCTTGAAAATCTGTTCACTTTTAAAAATTTATAACCGTTTGTCAAATTCTTTATATGCAGAAGAGCCCTTGCCTTGCTTTTCCCCTTTGAGTTACTGATGATGCTTAACTAGAGATAGGCAGCATAGTTAATCAATGGTTGATTTTGCTTGTAATTGTTTTAGCATTTTTCTTCTTTTACAATACGACACCCTATGATCTTATGTGCACAAGTTGACATGTCGGAATACCAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGGTATTTAACAAGACCCTTGTGACATACTTTATAACTCGAAAAACCTTTACGTGTTTTTTCCTTTATTCTTATTAAAATAAGTGCTATTCTTATTTTGGCCACATAAAAAAAAAATACTATCAATATTCCTAGAGGACACTTCTAAAATTTTTCATTGTGAAGACAAACTTTTTCATCTTTTCAAACCTTTGATTTTATTCAGAGTGGGCTCAGTTTCCTAAGCCTGTTTCTAACGTTTGAAATTGCTGAGCTTATTTACTCTCTGTTTTCTTTCTTTTGGATTTTAATTGTATTTTGAAGAGTTGAACACGTACTTTTGAAGTATTGTAAACTCCGTCTCACAGTATAAGAAGTTAGGCATAAGATTGTTGTTTTCTAGTCATGGGATGCTCAAACTCCTTTGGCCAAACAAGGTGTAGAGTTCACAACCCTGTTTTCCCAACTACTTGCAGCAAGCACCCCCTCTGATGTTAGAATAGAAAATGCGTTGGAGTGAAATTCTGTATGATCCTATCGTGATGTTGTTCCTTCATTAGTTATTTCGTATTATACATATTTTTGTTACTTTCATGATGGTGCAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAGGAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGACTGTAGATAGGTTTTCCCATTTTTTTGAACAATTGCTGTTGGTTTTTAGTTCGTGTCTAACCAAATCAACAGTTTTTACCTCCAAAACATGAGGCAGAAGAATGTTCTATAAGCTGAGTTTGTTACTTTCATTTTCAGTGCCTTTTTGTTTTAGGCTGCTTTGGTTGAGTGCCTGCTTGTTCAGATGAGGTTGGAATTAGCCACATGGAAACAAATTGGATTTATTGGTTGTAAATGGGAAAAGATTTTGCAATGTTCCTCGTGCTCTGCTGTCATTTGAAACGATTTGAGAGAGAATAAATTTTTAAAAATTGTCTTTAGAGAA

Coding sequence (CDS)

ATGTATCTTATGGATGGACAAGAGAACATACTTGAGGCCATATATGAAGACGATAAGTTGGAAAATGATGATGTTGAAATGGCCGATGTGGAGGAAGGGGAGTTCATTGACGACAATATCAATATAGAGAAAAGCAGTTTTACAGATGTCCAAGCACCAAGTACGGATCAGAGAAGTAAAAATCGTAAACATCGGACAAAGAAAAAGAAGAACAAAAGAAAGTCAAGCGAGCCAGGTTCAAATGGCACTGATATAAACAGGTTTGTGTTGAATGCATGCAGACTTTTGAAAGAGAAAAAATCGTACATGGTGTACACTGCTGTAGGTTGTCTTGGAGTCTCTGCATTAAGCGAACTTATCAAAGAGGTCAATGCAGTTCAAGCTTGTGGAGGTCAGATGACTGCAGATGGCAGGCGCTTTCGGACGGGAGGTGGCATATTATGGAGCATCATCAAAACCCGGGAACCAAATGCCTACAAAGAGATAATGAAACGTGCAAAAGAGTTTGAGAAACAATTTAAGCAACCAAATGTGAGAAGGGAGGCTACAGAAACTGAGAAAGAAAGTTCTCAAAAAGTTCCTCACCTTTTCTCTGAAGGATCTTCTAGAAATCTGCCAGATCACGTCCAAAGCTTTTCTTCAGAGCTGAATCAATCTAAGGAATCAAATTCCGAAGAAAAACTGTCTTCTATTCACGATAGATTAAGAGTACCAGTTTCATATGATGATGACCTCCTTCAAGAAAATCCGAAAGAGGAAGATACAACTGACTGTAGATAG

Protein sequence

MYLMDGQENILEAIYEDDKLENDDVEMADVEEGEFIDDNINIEKSSFTDVQAPSTDQRSKNRKHRTKKKKNKRKSSEPGSNGTDINRFVLNACRLLKEKKSYMVYTAVGCLGVSALSELIKEVNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREATETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYDDDLLQENPKEEDTTDCR
Homology
[Close]
BLAST of Cucsat.G6239 vs. NCBI nr
Match: XP_031744074.1 (uncharacterized protein LOC101205280 isoform X2 [Cucumis sativus] >KAE8646696.1 hypothetical protein Csa_005172 [Cucumis sativus])

HSP 1 Score: 264 bits (674), Expect = 5.32e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA
Sbjct: 116 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 175

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD
Sbjct: 176 TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 235

Query: 122 DDLLQENPKEEDTTDCR 138
           DDLLQENPKEEDTTDCR
Sbjct: 236 DDLLQENPKEEDTTDCR 252

[Close]
BLAST of Cucsat.G6239 vs. NCBI nr
Match: XP_004144996.1 (uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus])

HSP 1 Score: 264 bits (674), Expect = 6.70e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA
Sbjct: 123 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 182

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD
Sbjct: 183 TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 242

Query: 122 DDLLQENPKEEDTTDCR 138
           DDLLQENPKEEDTTDCR
Sbjct: 243 DDLLQENPKEEDTTDCR 259

[Close]
BLAST of Cucsat.G6239 vs. NCBI nr
Match: KAA0040009.1 (uncharacterized protein E6C27_scaffold122G002920 [Cucumis melo var. makuwa] >TYK24493.1 uncharacterized protein E5676_scaffold266G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 246 bits (627), Expect = 8.48e-80
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEG-SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 121
           TETEKESSQKVPHLFSEG SSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SY
Sbjct: 180 TETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISY 239

Query: 122 DDDLLQENPKEEDTT 135
           DDDLLQENPKEEDTT
Sbjct: 240 DDDLLQENPKEEDTT 254

[Close]
BLAST of Cucsat.G6239 vs. NCBI nr
Match: XP_008460135.1 (PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo])

HSP 1 Score: 243 bits (621), Expect = 6.92e-79
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEG-SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 121
            ETEKESSQKVPHLFSEG SSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SY
Sbjct: 180 RETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISY 239

Query: 122 DDDLLQENPKEEDTT 135
           DDDLLQENPKEEDTT
Sbjct: 240 DDDLLQENPKEEDTT 254

[Close]
BLAST of Cucsat.G6239 vs. NCBI nr
Match: XP_023547831.1 (uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 218 bits (555), Expect = 6.65e-69
Identity = 113/134 (84.33%), Postives = 124/134 (92.54%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TE  K SSQ+V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYD
Sbjct: 180 TEIGKASSQEVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYD 239

Query: 122 DDLLQENPKEEDTT 135
           DD+L+ENPKEEDTT
Sbjct: 240 DDILRENPKEEDTT 253

[Close]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match: A0A0A0KBJ7 (Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G076770 PE=3 SV=1)

HSP 1 Score: 264 bits (674), Expect = 3.24e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA
Sbjct: 123 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 182

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD
Sbjct: 183 TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 242

Query: 122 DDLLQENPKEEDTTDCR 138
           DDLLQENPKEEDTTDCR
Sbjct: 243 DDLLQENPKEEDTTDCR 259

[Close]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match: A0A5D3DLH5 (Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00350 PE=3 SV=1)

HSP 1 Score: 246 bits (627), Expect = 4.11e-80
Identity = 129/135 (95.56%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEG-SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 121
           TETEKESSQKVPHLFSEG SSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SY
Sbjct: 180 TETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISY 239

Query: 122 DDDLLQENPKEEDTT 135
           DDDLLQENPKEEDTT
Sbjct: 240 DDDLLQENPKEEDTT 254

[Close]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match: A0A1S3CD38 (Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC103499036 PE=3 SV=1)

HSP 1 Score: 243 bits (621), Expect = 3.35e-79
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEG-SSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSY 121
            ETEKESSQKVPHLFSEG SSRNLPDHVQSF+SELN+SKESNSEEK SSIHDRLRVP+SY
Sbjct: 180 RETEKESSQKVPHLFSEGGSSRNLPDHVQSFTSELNRSKESNSEEKRSSIHDRLRVPISY 239

Query: 122 DDDLLQENPKEEDTT 135
           DDDLLQENPKEEDTT
Sbjct: 240 DDDLLQENPKEEDTT 254

[Close]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match: A0A6J1H592 (Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC111460255 PE=3 SV=1)

HSP 1 Score: 216 bits (549), Expect = 2.62e-68
Identity = 112/134 (83.58%), Postives = 123/134 (91.79%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TE  K SSQ V HLFSEG+S++ PD +QS + E NQSKESNSEEK SS+H+RLRVPVSYD
Sbjct: 180 TEIGKASSQDVLHLFSEGASQDQPDSIQSLTPEQNQSKESNSEEKRSSVHERLRVPVSYD 239

Query: 122 DDLLQENPKEEDTT 135
           DD+L+ENPKEEDT+
Sbjct: 240 DDILRENPKEEDTS 253

[Close]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match: A0A6J1KUZ4 (Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC111498940 PE=3 SV=1)

HSP 1 Score: 209 bits (533), Expect = 7.01e-66
Identity = 110/134 (82.09%), Postives = 122/134 (91.04%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPN+RREA
Sbjct: 120 VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNIRREA 179

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSELNQSKESNSEEKLSSIHDRLRVPVSYD 121
           TE  K SSQ+V HLFS+G+S++ PD +QS +   NQSKESNSEEK SS+ +RLRVPVSYD
Sbjct: 180 TEIGKASSQEVLHLFSQGASQDQPDSIQSLTPLQNQSKESNSEEKRSSVLERLRVPVSYD 239

Query: 122 DDLLQENPKEEDTT 135
           DD+L+ENPKEEDTT
Sbjct: 240 DDILRENPKEEDTT 253

[Close]
BLAST of Cucsat.G6239 vs. TAIR 10
Match: AT3G20430.1 (CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-binding domain (InterPro:IPR019385); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 3; Metazoa - 56; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 9.9e-23
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 0 

Query: 2   VNAVQACGGQMTADGRRFRTGGGILWSIIKTREPNAYKEIMKRAKEFEKQFKQPNVRREA 61
           V A++ CGGQ+TADG R RT GG+LW+IIK R+P AY+EIMK+ KEFEKQF+QPN R ++
Sbjct: 129 VVAIETCGGQVTADGTRKRTSGGVLWNIIKARQPEAYREIMKKTKEFEKQFRQPNTRPKS 188

Query: 62  TETEKESSQKVPHLFSEGSSRNLPDHVQSFSSEL-----NQSKESNSEEKLSSIHDRLRV 121
                + S       SEG +       ++  SE+      +  ES  E++  S+H+R+RV
Sbjct: 189 GPKRDQGSS------SEGLASGNVSADEALVSEMCVMPVAEQTESKPEKERKSVHERIRV 248

Query: 122 PVSYDDDLLQENPKEE 133
           PVSY DDL ++ P ++
Sbjct: 249 PVSY-DDLFRDAPLDD 257

The following BLAST results are available for this feature:
BLAST of Cucsat.G6239 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G6239 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744074.15.32e-87100.00uncharacterized protein LOC101205280 isoform X2 [Cucumis sativus] >KAE8646696.1 ... [more]
XP_004144996.16.70e-87100.00uncharacterized protein LOC101205280 isoform X1 [Cucumis sativus][more]
KAA0040009.18.48e-8095.56uncharacterized protein E6C27_scaffold122G002920 [Cucumis melo var. makuwa] >TYK... [more]
XP_008460135.16.92e-7994.81PREDICTED: uncharacterized protein LOC103499036 [Cucumis melo][more]
XP_023547831.16.65e-6984.33uncharacterized protein LOC111806680 [Cucurbita pepo subsp. pepo][more]
BLAST of Cucsat.G6239 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBJ73.24e-87100.00Phosphorylated adapter RNA export protein OS=Cucumis sativus OX=3659 GN=Csa_6G07... [more]
A0A5D3DLH54.11e-8095.56Phosphorylated adapter RNA export protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3CD383.35e-7994.81Phosphorylated adapter RNA export protein OS=Cucumis melo OX=3656 GN=LOC10349903... [more]
A0A6J1H5922.62e-6883.58Phosphorylated adapter RNA export protein OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1KUZ47.01e-6682.09Phosphorylated adapter RNA export protein OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
BLAST of Cucsat.G6239 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G20430.19.9e-2344.85CONTAINS InterPro DOMAIN/s: Phosphorylated adapter RNA export protein, RNA-bindi... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019385Phosphorylated adapter RNA export protein, RNA-binding domainPFAMPF10258RNA_GG_bindcoord: 13..59
e-value: 1.2E-12
score: 47.6
IPR038092Phosphorylated adapter RNA export protein, RNA-binding domain superfamilyGENE3D1.10.10.1440coord: 7..68
e-value: 6.5E-17
score: 63.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..150
IPR039047Phosphorylated adapter RNA export proteinPANTHERPTHR13135CYTOSOLIC RESINIFERATOXIN BINDING PROTEIN RBP-26coord: 13..137

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G6239.T2Cucsat.G6239.T2mRNA
Cucsat.G6239.T1Cucsat.G6239.T1mRNA
Cucsat.G6239.T5Cucsat.G6239.T5mRNA
Cucsat.G6239.T4Cucsat.G6239.T4mRNA
Cucsat.G6239.T3Cucsat.G6239.T3mRNA
Cucsat.G6239.T8Cucsat.G6239.T8mRNA
Cucsat.G6239.T14Cucsat.G6239.T14mRNA
Cucsat.G6239.T12Cucsat.G6239.T12mRNA
Cucsat.G6239.T19Cucsat.G6239.T19mRNA
Cucsat.G6239.T9Cucsat.G6239.T9mRNA
Cucsat.G6239.T6Cucsat.G6239.T6mRNA
Cucsat.G6239.T15Cucsat.G6239.T15mRNA
Cucsat.G6239.T11Cucsat.G6239.T11mRNA
Cucsat.G6239.T16Cucsat.G6239.T16mRNA
Cucsat.G6239.T7Cucsat.G6239.T7mRNA
Cucsat.G6239.T13Cucsat.G6239.T13mRNA
Cucsat.G6239.T10Cucsat.G6239.T10mRNA
Cucsat.G6239.T18Cucsat.G6239.T18mRNA
Cucsat.G6239.T17Cucsat.G6239.T17mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0006408 snRNA export from nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
molecular_function GO:0003723 RNA binding