Cucsat.G5504 (gene) Cucumber (B10) v3

Overview
NameCucsat.G5504
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionElongation factor 1-alpha
Locationctg1269: 493580 .. 494853 (-)
RNA-Seq ExpressionCucsat.G5504
SyntenyCucsat.G5504
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACTAAATTTTAAAATAAATTGCAAATTTAAATTTAATACTAAATAAAGTTTCACATTTCAATTTCTATTACAAAAATCACATTTAAAAATAGTCTAATCTAAAATTGGTTTTAGAAGTAAATTTAAATTACATGATAATTTCTTCATCTTCCGCTTTCCTTCTTTCTCATTTGTATCCCTCCCTCGTTTCTTGAATCGGCGGTATCTCTCATTCCGGCTTCTCCATCTATCTTCGTCTTTTTGAGGTTTGGTTTTGTCACAGCTTGATGAATATTTTTTCTGTATAGAATGTGTTTGAACTTCATACGTGTGCATGACGTTTAATCCATTGTTGTATTACGGATTTGTTTCAATAGGTGGGTCCATCTACGTTTGATTCGTACAAGGAGGATTTTTTTTTTTTTCAGTTTAAGAGGATTGATTTTCTGTTTGTATTTGTTGAAGATGGAGTCGAATTTTGTGATTACGTACAAGAGACGATGATGTATCATTGAATAATTTTAGAACTTTTGGATGATCTTAGTAAATTTCGTTAAGTTTCTGGAGATTGATTATGTGTTTATTTATGGATTCGATGGAAATGTGTTGAGGAGAGATATCCATTTGAATTACTTGTAGAGTGAATGTTGTTCCGTAAACTTACGGTTTGGTTTACGATTAATATTATTAGATCTTTCAGGATACAAGTTTTAAAATGGGGAAAGAGAAGACTCACATTAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCTACCACCACCGGGCATTTAATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCTTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGTGACTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGATTGTGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACACGTGAGCATGCTTTGCTCGCGTTTACTCTCGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGGTGAGATTCTGCTTCAATATTTGCGTTTCGATCATGTTTGTGGCCTTGGTTTTTTTTAGTTGATATCGTTAACCTAATTTCTGATTTTAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAAAAGGTCGGATACAACCCTGACAAAATCCCCTTTGTTCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCGACCAACCTTGACTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTTGGTCGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTGGTCACTTTTGGCCCTACTGGATTGACCACTGAAGTCAAGTCTGTTGAGATGCACCACGAATCTCTACCCGAGGCTGTTCCTGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTCGCTTCCAACTCAAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCTGGACAAATTGGCAATGGTTATGCTCCAGTGCTTGATTGCCACACCTCTCATATTGCGGTGAAATTTGCCGAGATTCTAACCAAAATCGACAGGCGATCAGGTAAGGAACTTGAGAAGGAACCCAAGTTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGATTCCCACCAAACCTATGGTGGTGGAAACCTTCTCTCAGTACCCTCCTCTTGGACGTTTCGCCGTAAGAGACATGAGACAGACAGTTGCTGTTGGTGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACTAAATCCGCAGCCAAGAAGGGTGGAAAGTGAACCGTATTTACAAAACTTCACACAACTCTCTCTGACTCTAAGGTTTGCAAGCATTACAATCAAAATAAAGAACTGGCAAGTTTTCTTGTTTATGCTTTGTGGAGTCTTTTAATTTACATTGGTGATTATAGTTGTTGGCATTGGTTATTAAGTACTCACTCTCAGAATTGGGTGCTTGATAGACGGTGGCACAACTATTCTCTATAGTCTCTCTTTTCGTTTTGTATTCTGCTTTATTGGTCCTATTTGAGTTGGATGTGCTTTGGTTCTTCCCAAATGGATAAAAAAAAAAAAAAATCGATTTCTATGTTGCTGAGGTGAAGACATACTACATTTTTAATACTAAAAACCAATGTCTTTGCTTATTTTCACAATGAAGAAATTGCTGCCCTTTCTAGTT

Coding sequence (CDS)

ATGGGGAAAGAGAAGACTCACATTAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCTACCACCACCGGGCATTTAATCTATAAGCTTGGTGGTATTGACAAGCGTGTCATTGAAAGGTTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCCTTCAAGTATGCTTGGGTGTTGGACAAGCTTAAGGCTGAACGTGAACGTGGTATTACCATTGATATTGCTTTGTGGAAGTTTGAAACCACCAAATACTACTGCACCGTTATTGATGCTCCTGGACATCGTGACTTCATTAAGAACATGATTACTGGTACCTCACAAGCTGATTGTGCTGTTCTCATTATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGATGGTCAAACACGTGAGCATGCTTTGCTCGCGTTTACTCTCGGTGTCAAGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACCACCCCCAAGTACTCCAAGGCAAGGTATGATGAAATTGTCAAGGAAGTTTCTTCCTACCTCAAAAAGGTCGGATACAACCCTGACAAAATCCCCTTTGTTCCCATCTCTGGTTTTGAAGGAGACAACATGATTGAGAGGTCGACCAACCTTGACTGGTACAAGGGTCCAACTCTCCTTGAGGCTCTTGACTTGATCCAGGAGCCCAAGAGGCCCTCAGACAAGCCACTCCGTCTTCCACTTCAGGATGTGTACAAGATCGGTGGTATTGGAACTGTACCAGTTGGTCGTGTTGAGACTGGTGTCCTCAAACCTGGAATGGTGGTCACTTTTGGCCCTACTGGATTGACCACTGAAGTCAAGTCTGTTGAGATGCACCACGAATCTCTACCCGAGGCTGTTCCTGGTGACAATGTGGGATTCAATGTGAAGAATGTTGCTGTAAAGGATCTCAAGCGTGGTTTCGTCGCTTCCAACTCAAAGGATGACCCTGCCAGGGAGGCTGCCAACTTCACTTCTCAAGTCATTATCATGAACCACCCTGGACAAATTGGCAATGGTTATGCTCCAGTGCTTGATTGCCACACCTCTCATATTGCGGTGAAATTTGCCGAGATTCTAACCAAAATCGACAGGCGATCAGGTAAGGAACTTGAGAAGGAACCCAAGTTCTTAAAGAATGGTGATGCAGGTATGATTAAGATGATTCCCACCAAACCTATGGTGGTGGAAACCTTCTCTCAGTACCCTCCTCTTGGACGTTTCGCCGTAAGAGACATGAGACAGACAGTTGCTGTTGGTGTCATCAAGTCCGTCGAAAAGAAGGATCCAAGTGGTGCTAAGGTTACTAAATCCGCAGCCAAGAAGGGTGGAAAGTGA

Protein sequence

MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLIQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEAVPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMIKMIPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPSGAKVTKSAAKKGGK
Homology
[Close]
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match: Q41803 (Elongation factor 1-alpha OS=Zea mays OX=4577 GN=EF1A PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-93
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match: O64937 (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=REFA1 PE=2 SV=2)

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-93
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match: Q03033 (Elongation factor 1-alpha OS=Triticum aestivum OX=4565 GN=TEF1 PE=2 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-93
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match: O49169 (Elongation factor 1-alpha OS=Manihot esculenta OX=3983 GN=EF1 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 8.4e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match: P0DH99 (Elongation factor 1-alpha 1 OS=Arabidopsis thaliana OX=3702 GN=A1 PE=1 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 1.4e-92
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. NCBI nr
Match: KAG2651399.1 (hypothetical protein PVAP13_1NG268157 [Panicum virgatum])

HSP 1 Score: 341 bits (874), Expect = 6.54e-118
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. NCBI nr
Match: MBA0620289.1 (hypothetical protein [Gossypium davidsonii])

HSP 1 Score: 339 bits (869), Expect = 2.76e-117
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. NCBI nr
Match: AQK82357.1 (elongation factor 1-alpha10 [Zea mays] >AQL04308.1 elongation factor 1-alpha9 [Zea mays])

HSP 1 Score: 341 bits (874), Expect = 4.66e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. NCBI nr
Match: MBA0749958.1 (hypothetical protein [Gossypium gossypioides])

HSP 1 Score: 339 bits (869), Expect = 5.38e-117
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. NCBI nr
Match: AQK82353.1 (elongation factor 1-alpha10 [Zea mays])

HSP 1 Score: 341 bits (874), Expect = 5.95e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match: A0A287P7C9 (Elongation factor 1-alpha OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 1.08e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 31  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 90

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 91  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 150

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 151 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 196

[Close]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match: A0A7J8S2M2 (Tr-type G domain-containing protein (Fragment) OS=Gossypium davidsonii OX=34287 GN=Godav_006039 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 1.34e-117
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match: A0A287P7E9 (Tr-type G domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1)

HSP 1 Score: 340 bits (871), Expect = 1.65e-117
Identity = 165/166 (99.40%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGV+QMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match: A0A1D6LSD0 (Elongation factor 1-alpha10 OS=Zea mays OX=4577 GN=100286309 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 2.26e-117
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match: A0A7J9CNN5 (Tr-type G domain-containing protein (Fragment) OS=Gossypium gossypioides OX=34282 GN=Gogos_003830 PE=4 SV=1)

HSP 1 Score: 339 bits (869), Expect = 2.60e-117
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. TAIR 10
Match: AT1G07920.1 (GTP binding Elongation factor Tu family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. TAIR 10
Match: AT1G07930.1 (GTP binding Elongation factor Tu family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. TAIR 10
Match: AT1G07940.1 (GTP binding Elongation factor Tu family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. TAIR 10
Match: AT1G07940.2 (GTP binding Elongation factor Tu family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

[Close]
BLAST of Cucsat.G5504 vs. TAIR 10
Match: AT1G07930.2 (GTP binding Elongation factor Tu family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 165/166 (99.40%), Postives = 165/166 (99.40%), Query Frame = 0 

Query: 1   MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL
Sbjct: 1   MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60

Query: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
           DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT
Sbjct: 61  DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120

Query: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 167
           GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKAR 166

The following BLAST results are available for this feature:
BLAST of Cucsat.G5504 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q418032.2e-93100.00Elongation factor 1-alpha OS=Zea mays OX=4577 GN=EF1A PE=3 SV=1[more]
O649372.2e-93100.00Elongation factor 1-alpha OS=Oryza sativa subsp. japonica OX=39947 GN=REFA1 PE=2... [more]
Q030332.2e-93100.00Elongation factor 1-alpha OS=Triticum aestivum OX=4565 GN=TEF1 PE=2 SV=1[more]
O491698.4e-9399.40Elongation factor 1-alpha OS=Manihot esculenta OX=3983 GN=EF1 PE=3 SV=1[more]
P0DH991.4e-9299.40Elongation factor 1-alpha 1 OS=Arabidopsis thaliana OX=3702 GN=A1 PE=1 SV=1[more]
BLAST of Cucsat.G5504 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG2651399.16.54e-118100.00hypothetical protein PVAP13_1NG268157 [Panicum virgatum][more]
MBA0620289.12.76e-11799.40hypothetical protein [Gossypium davidsonii][more]
AQK82357.14.66e-117100.00elongation factor 1-alpha10 [Zea mays] >AQL04308.1 elongation factor 1-alpha9 [Z... [more]
MBA0749958.15.38e-11799.40hypothetical protein [Gossypium gossypioides][more]
AQK82353.15.95e-117100.00elongation factor 1-alpha10 [Zea mays][more]
BLAST of Cucsat.G5504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A287P7C91.08e-117100.00Elongation factor 1-alpha OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1[more]
A0A7J8S2M21.34e-11799.40Tr-type G domain-containing protein (Fragment) OS=Gossypium davidsonii OX=34287 ... [more]
A0A287P7E91.65e-11799.40Tr-type G domain-containing protein OS=Hordeum vulgare subsp. vulgare OX=112509 ... [more]
A0A1D6LSD02.26e-117100.00Elongation factor 1-alpha10 OS=Zea mays OX=4577 GN=100286309 PE=4 SV=1[more]
A0A7J9CNN52.60e-11799.40Tr-type G domain-containing protein (Fragment) OS=Gossypium gossypioides OX=3428... [more]
BLAST of Cucsat.G5504 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G07920.11.0e-9399.40GTP binding Elongation factor Tu family protein [more]
AT1G07930.11.0e-9399.40GTP binding Elongation factor Tu family protein [more]
AT1G07940.11.0e-9399.40GTP binding Elongation factor Tu family protein [more]
AT1G07940.21.0e-9399.40GTP binding Elongation factor Tu family protein [more]
AT1G07930.21.0e-9399.40GTP binding Elongation factor Tu family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Translational (tr)-type GTP-binding domainPRINTSPR00315ELONGATNFCTcoord: 148..157
score: 47.47
coord: 88..98
score: 70.19
coord: 104..115
score: 60.8
coord: 9..22
score: 74.83
coord: 68..76
score: 77.92
IPR000795Translational (tr)-type GTP-binding domainPFAMPF00009GTP_EFTUcoord: 5..221
e-value: 1.5E-53
score: 181.3
IPR000795Translational (tr)-type GTP-binding domainPROSITEPS51722G_TR_2coord: 5..230
score: 59.703484
IPR004539Translation elongation factor EF1A, eukaryotic/archaealTIGRFAMTIGR00483TIGR00483coord: 1..433
e-value: 3.8E-214
score: 708.8
IPR004539Translation elongation factor EF1A, eukaryotic/archaealHAMAPMF_00118_AEF_Tu_Acoord: 2..432
score: 51.361118
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 323..430
e-value: 2.6E-42
score: 145.5
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 229..316
e-value: 4.0E-35
score: 121.8
NoneNo IPR availablePANTHERPTHR23115TRANSLATION FACTORcoord: 1..447
NoneNo IPR availablePANTHERPTHR23115:SF263ELONGATION FACTOR 1-ALPHA-LIKEcoord: 1..447
NoneNo IPR availableCDDcd03693EF1_alpha_IIcoord: 230..320
e-value: 2.22872E-59
score: 187.395
NoneNo IPR availableCDDcd03705EF1_alpha_IIIcoord: 323..426
e-value: 1.00802E-67
score: 209.357
NoneNo IPR availableCDDcd01883EF1_alphacoord: 9..227
e-value: 4.52748E-157
score: 441.16
IPR004161Translation elongation factor EFTu-like, domain 2PFAMPF03144GTP_EFTU_D2coord: 248..313
e-value: 4.4E-15
score: 55.8
IPR004160Translation elongation factor EFTu/EF1A, C-terminalPFAMPF03143GTP_EFTU_D3coord: 322..429
e-value: 2.5E-30
score: 104.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 1..226
e-value: 6.9E-90
score: 302.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..249
IPR031157Tr-type G domain, conserved sitePROSITEPS00301G_TR_1coord: 61..76
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 231..321
IPR009001Translation elongation factor EF1A/initiation factor IF2gamma, C-terminalSUPERFAMILY50465EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domaincoord: 326..429

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G5504.T1Cucsat.G5504.T1mRNA
Cucsat.G5504.T2Cucsat.G5504.T2mRNA
Cucsat.G5504.T3Cucsat.G5504.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity