Cucsat.G501 (gene) Cucumber (B10) v3

Overview
NameCucsat.G501
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionprotein RDM1
Locationctg1: 9872739 .. 9877388 (-)
RNA-Seq ExpressionCucsat.G501
SyntenyCucsat.G501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTATATATTTTTCATTTCTTTAATCAATAAATCATTTATATTAGAAAAATACAATCAAACTTAACCTATATTTTAGTGAATGGGTTGGGTTGAAAATGGTTGAAAATCCAACTGAGAATATCTCACATCCAAACCGTTTACGCCCTTACTATCTCCGATCTCCCCTCGCGCAAAACTCAAAACTCTGTGTCTCAAAATTCGAACTTGTTGAATTAACGAGCTCCACTGGTTATTCGTCCTGAAGCCCACATCGACGAACAGCTTCAGCTTTACGATTCAACCCTCGAAGGTACTCAACTCAACATCACTCTCTCTTTCCATCGATCCATTGCCCTCTTTGTTTATGTAGAAAATCCACTCAGATTACAATGTTCACTGTTTCTTCCTGTCCAATAATCAAAACCCATCTTCTTCCTTTCTTCTTATCGTCCGTCGTTGGTGAGTTTGCATCATTTTTCTTACAGGATCCGATGGGTTGCTGCCTGCATTTGTATGAAAACTTCTTGTTTATTTGGTTGTTTGAGATGTTGATTGTAATTGTCTATCGTCGTTTTGATGGGGTTGCCTACCTAGAATGTTTCTTGGAGGGATGAACATCCATCGTAGTATTTATTTATTAGTTTCCTAAACTAGGGTTACCCTTCTCTTGACTGGGTTACCCTTCACTTGACTGCCAGCCGCTTCCCACTTCTCTTCTCAATCTCTCGATCTTTCGTCTCCTCCCACCATCTCCATTGGCCATAAAGCTTCCTCTCCCTCTCTCTCTGTCTCAGCTTCCTCTTTATCGGCCTCACTTCGTCTTCATCTCACGATTCTGAAGTACATTCTGTTTCATGGCAACTAAAAGCTGTTGGTGCACTTTTCCTTCTCAATAGTAATCTTTAGAGAATCCAACCATCGCTTAAGTGGTACACGACATACACTATTGACCTAGAGGTTAGAGGTTGAAGTCCTCCTTCCCAAATACAACCTTACTTGAACAGGATCTGTTCTATTTTAGTTTGGTTGGCATCTCATAATTCTAACTCTTTGAATGATCAATGGATTTTTAACCGTGTTGGTATTTTGTAAGCTGTTCTGTATTGATCGGTATGGTTACTAACAAAACCATGATCTCTTCTTGTCCAGAATCACATAATTTACAAAATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATTTTGGCCTTGCATGAGTGAGATCAAGTTCAATTCGAAGTCTCTGATAATCAATGCTGATGTGTATATAATTTTCAAATTCATAAGCTTTGAAAATAGGATCTTCTTTGAAATGTCTTCTAACGATGCAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGAAGGCTGCTTTCAGTTATGTTCTGCTCTGTGTTGATACTATAGCATTTTCTAGAAGGCTAACATGTCAGTGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTTTGTCACATTGCACTTCACTGTAAGGAGCTCCAGCATTGCTTCATCTGTCCATTGTTGCTATCTGTCTGTTCACTAGTTGACTGCATTTACTGTTGTAGCAAAGAACGAATGTAAATCAATATTGAAGATGCATATTTATCTTACACTTCTTTCCTATCTGAGAATTACATTACCAATAATCACCACATGAACAAGACCCTTGTCTAAAGACGTGAAACCTATTATTATCACGTACTGTTATTTCCCTATGATACACTTTTGAAATGTATTTGGCAAATGAATGACAGTCTGAACACATTCGGAGATTCTTCATAACACGAATTGGTACATGCTTTTTTGTACTTATAAGCCCGTAAGCCACGGCCAGCTTCTCGCTGTGTCGATTGAGTAGATATTGTTTTTCCTGCTCATTTACGTCAAGAAGAACATTGGTCACGTCAGGAACGTAGCCAACATCCCCAAGCCTGCTGGTAATTTCGTTTAACATCATGTCAATGCTGTAATTTTCTGGGTGTGATCTGTCACCTGAGGTAAACTCGTGAATAACTCCATCGACTTGTATTGAGCTTGAACCAGGCATTTTTTGAACTCCTTTCTCCTTCAATTGTAGCCTCACGTTGGCAACATCATCCCACTTTTCAGCTGAGGCATATATGTTTGATAGAAGTATATGAATCCCGGTCTTTTCTGGAGCCACTTCTGCCAACCTTTCAGCTGCAAATGTCGCCATATCAATGTTTTTATGGGTACGGCATGCAGCCAATAGAGATCCCCATATAATCCCATTAGGTCTCATTGGCATGCTCTCTATAATATCTAGAGCTTCTTCTAACTTACCTGCACGACCTAATAGATCAACCATGCAACCGTAATGAACAATCTGCGGAGAGAGACCATGTTGCTTCATTGACTCAAATATGTGTTCCCCTTGTTCCACGAAACCACCATGGCTACAAGCCGTTAATATGTTTACAAAAACTACTTGATCTGGTTTCACCCCTTGCCTTAGCATCTCATTGTAAAGTTCTATAGCCCGATCACCATTCCCATTCACAGCCATTGCTCCAATGGCTGCTGTCCATGCTGAGACGTCTTTTCTATGCATATTGTTGAACACATTCATTGCACTATGAGGGTCACCACACCTAGCAAACATATCAACCAATGCTGTCTCAAGCAACATATCACAATAGATAGCGTTCTTTACAATATGGGAATATACCCACTTAGCGAGTTCGAGAGCTCCAAGATTTCCACATGCCGATGCAACTTCTACCATTGTCACCCTGTCTACTTTTATTTCCTTTAATTGCATCTCTCGGAACAATTCAATTGCTTCATCAAACATACTTTCTTGAACCAAAGCATTAAGCATCGTGTTCCAAGATACAATATCCTTTTCCGGCATCTCATTGAATATCTTCCTAGCTGACTCTAAATCTTTGTTTCTAATGTAACCAACAAGTAATGAGTTCCACGACACAATGGTCTTATTTAACATACCGTCAAAAACTCTGTACGCCATTTCTTGTTTTCCACACTTCATATACATATCAATCATTGCATTGCAAACGTTATCCCAACCTTCATACCCATTTCTCAGAGAATAGTTGTGGCAGCATTTCCCAAGTAGATAGTCACCCATCTGCCCACATGCCGAGATTGCTGGTAACAACGAAACTCTATCTGGCCGAAGATCTAATTGAAGCATATCTACCAAGACAGCGAGTACCTCGTTCGGCATACCATGGCGTGCATAATTTGACATGATTGTGTTACATAAAACCAAATTCTTATCAACACATTCATCATACAATCGCTTTGCAGCACCAGTTTCTCCACATTTCATGAACATATCCGCAAGTGCATTCACCATATGAGTATTAAGCTCCATTTCTGACTCTTCAATGTAAGCATGGAGTCTCTTGGCTAGTTCAAGATCTTTCAACTTGGCACAAGCTGATATCACACACACCATTGTGACAGAATTGGGTTTAACACCTGCCTCGATCATTTGGAAAAACAAAGCCACAGCCTCTCCAAAAAAATCTGTCCTAGAATAACCACAAATCAAGCTGGTCCATGAAACAACATTTCTCTCAAGCATTCCATCAAACACCTTTCGAGCAAACAAAAACTCTCCACCTTCCGCATATAGATGTATCAGAGAATTAGCAACAAACATATCTCCCTCTAAACCAATCTTCAGAAGAGCTCCATGGAGCTGAATCCCTTCAACAAACGCAGCAGTCTTAGCACACGCACTTAACACAAATGGAAACGTGAAGTTATCTGGCATAAACCCAAACTCGATCATCTGAACATACAGAGAAATAGCTTCATCATAAAGCCCTGCAGCAGAGTATCCTCTGATTAACAAATTGTACATAAAAAGAGTGACATTTGCTTCCCCGTCTTCATGGAAAAGCTCGAACGCTTTTCGAGCAAAATCCAAGCTTTCTGAAGTGCCCATTTCCACACAAGTGGATATAAGCTTAGTTACAGTCGATTGTTTACGAATGAGACCCTGCTTCAACGCGTAACAGTGTAACTGTCCAAGCTCATCTATGGTTTTGCAACTTTTGAACAACCCAATTTGAAAATGGTGGGGAGGGGTATGCTTTGAGTCATTCTGAGTGGTGGGTTTGATGAAATTCGGCGGGATGGAGATGGTTGGAAAAAGATTTGCCGCCATTAATGGAGACGTTTGTTGCCCTGTTTTGATTGAACGATTGCAACTCGAACCAAGTTTAACTCAGCACCAACATGCTCAAAGACTTTGAGATTGATAGTCCAAAGGAGCTTCCTTT

Coding sequence (CDS)

ATGAAGAGGCCAATGCCCTGGAATGAACAAGTAGATATTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAGCAGCAATACAAAATGATGGATATGAGTTCAAGCCTTCCCTAGACGATTTCAAAATTCCAGCCAAAGAAATGACATCTGAAGGTATGTTGATGAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGATCCAAATCCCAGCACAACGTGGTTCTGTGATACCATTTACAACTTGGATGGGTTTAGGCAAATCTATAAAGCAACTTTATGGCCAACCTTTGCACTACTTGACTAACATTCTACTCAAACAATGGGATCAATTACGGTTAGGAAGTGCGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCATCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCGATGCACCAAGCGTATGTTGACTCTATTTTCCCCCAACTATGA

Protein sequence

MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Homology
[Close]
BLAST of Cucsat.G501 vs. ExPASy Swiss-Prot
Match: Q9LUJ3 (Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.4e-48
Identity = 90/163 (55.21%), Postives = 123/163 (75.46%), Query Frame = 0 

Query: 11  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQ 70
           +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ 
Sbjct: 7   MELRPSGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHP 130
           IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R G+  E + LD++IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ 174
           +KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

[Close]
BLAST of Cucsat.G501 vs. NCBI nr
Match: XP_004134127.1 (protein RDM1 [Cucumis sativus] >XP_004134128.1 protein RDM1 [Cucumis sativus] >XP_031739108.1 protein RDM1 [Cucumis sativus] >KGN56957.1 hypothetical protein Csa_010629 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 2.49e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. NCBI nr
Match: XP_008438640.1 (PREDICTED: protein RDM1 [Cucumis melo] >XP_008438641.1 PREDICTED: protein RDM1 [Cucumis melo] >XP_008438642.1 PREDICTED: protein RDM1 [Cucumis melo] >XP_008438643.1 PREDICTED: protein RDM1 [Cucumis melo])

HSP 1 Score: 352 bits (904), Expect = 1.44e-122
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. NCBI nr
Match: KAA0049342.1 (protein RDM1 [Cucumis melo var. makuwa] >TYK17215.1 protein RDM1 [Cucumis melo var. makuwa])

HSP 1 Score: 352 bits (902), Expect = 2.91e-122
Identity = 170/174 (97.70%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. NCBI nr
Match: XP_038877941.1 (protein RDM1 [Benincasa hispida])

HSP 1 Score: 343 bits (880), Expect = 6.59e-119
Identity = 165/174 (94.83%), Postives = 170/174 (97.70%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMTSEGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTSEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. NCBI nr
Match: XP_022979547.1 (protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbita maxima] >XP_022979549.1 protein RDM1-like [Cucurbita maxima])

HSP 1 Score: 342 bits (877), Expect = 1.89e-118
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match: A0A0A0L8M0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1)

HSP 1 Score: 354 bits (909), Expect = 1.21e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match: A0A1S3AWI8 (protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1)

HSP 1 Score: 352 bits (904), Expect = 6.98e-123
Identity = 171/174 (98.28%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match: A0A5D3D0B3 (Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 PE=4 SV=1)

HSP 1 Score: 352 bits (902), Expect = 1.41e-122
Identity = 170/174 (97.70%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSEAA+QNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSEAAVQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHY+TNILLKQWDQLRLGSADE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYMTNILLKQWDQLRLGSADE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match: A0A6J1INZ9 (protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1)

HSP 1 Score: 342 bits (877), Expect = 9.15e-119
Identity = 164/174 (94.25%), Postives = 170/174 (97.70%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPSLDDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSLDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match: A0A6J1GV10 (protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1)

HSP 1 Score: 341 bits (875), Expect = 1.85e-118
Identity = 163/174 (93.68%), Postives = 170/174 (97.70%), Query Frame = 0 

Query: 1   MKRPMPWNEQVDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAE 60
           MKRPMPWNEQVD+ISSGESSSSDSE  +QNDG+EFKPS+DDFKIPAKEMT+EGML+KRAE
Sbjct: 1   MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSMDDFKIPAKEMTAEGMLIKRAE 60

Query: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADE 120
           MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLR GS DE
Sbjct: 61  MYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDE 120

Query: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQL 174
           YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMH+AYVDSIFPQL
Sbjct: 121 YKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL 174

[Close]
BLAST of Cucsat.G501 vs. TAIR 10
Match: AT3G22680.1 (RNA-DIRECTED DNA METHYLATION 1 )

HSP 1 Score: 191.4 bits (485), Expect = 6.0e-49
Identity = 90/163 (55.21%), Postives = 123/163 (75.46%), Query Frame = 0 

Query: 11  VDIISSGESSSSDSEAAIQNDGYEFKPSLDDFKIPAKEMTSEGMLMKRAEMYQEYMKQIQ 70
           +++  SG+S SSD +A I +DG+             +++  EG L++RAEMYQ+YMKQ+ 
Sbjct: 7   MELRPSGDSGSSDVDAEI-SDGF------SPLDTSHRDVADEGSLLRRAEMYQDYMKQVP 66

Query: 71  IPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRLGSADEYKPLDTVIHP 130
           IP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ R G+  E + LD++IHP
Sbjct: 67  IPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHP 126

Query: 131 SKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHQAYVDSIFPQ 174
           +KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Sbjct: 127 TKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFIDPIFPE 162

The following BLAST results are available for this feature:
BLAST of Cucsat.G501 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LUJ38.4e-4855.21Protein RDM1 OS=Arabidopsis thaliana OX=3702 GN=RDM1 PE=1 SV=1[more]
BLAST of Cucsat.G501 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004134127.12.49e-123100.00protein RDM1 [Cucumis sativus] >XP_004134128.1 protein RDM1 [Cucumis sativus] >X... [more]
XP_008438640.11.44e-12298.28PREDICTED: protein RDM1 [Cucumis melo] >XP_008438641.1 PREDICTED: protein RDM1 [... [more]
KAA0049342.12.91e-12297.70protein RDM1 [Cucumis melo var. makuwa] >TYK17215.1 protein RDM1 [Cucumis melo v... [more]
XP_038877941.16.59e-11994.83protein RDM1 [Benincasa hispida][more]
XP_022979547.11.89e-11894.25protein RDM1-like [Cucurbita maxima] >XP_022979548.1 protein RDM1-like [Cucurbit... [more]
BLAST of Cucsat.G501 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8M01.21e-123100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G146430 PE=4 SV=1[more]
A0A1S3AWI86.98e-12398.28protein RDM1 OS=Cucumis melo OX=3656 GN=LOC103483688 PE=4 SV=1[more]
A0A5D3D0B31.41e-12297.70Protein RDM1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G00640 P... [more]
A0A6J1INZ99.15e-11994.25protein RDM1-like OS=Cucurbita maxima OX=3661 GN=LOC111479225 PE=4 SV=1[more]
A0A6J1GV101.85e-11893.68protein RDM1 OS=Cucurbita moschata OX=3662 GN=LOC111457683 PE=4 SV=1[more]
BLAST of Cucsat.G501 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22680.16.0e-4955.21RNA-DIRECTED DNA METHYLATION 1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015270Protein RDM1, plantPFAMPF09187RdDM_RDM1coord: 42..160
e-value: 1.1E-66
score: 222.2
IPR015270Protein RDM1, plantPANTHERPTHR36366PROTEIN RDM1coord: 33..161
IPR036319RDM1 superfamilyGENE3D1.20.120.690RDM1 protein domaincoord: 40..161
e-value: 5.4E-63
score: 212.3
IPR036319RDM1 superfamilySUPERFAMILY109920Hypothetical protein At3g22680coord: 40..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G501.T1Cucsat.G501.T1mRNA
Cucsat.G501.T2Cucsat.G501.T2mRNA
Cucsat.G501.T5Cucsat.G501.T5mRNA
Cucsat.G501.T8Cucsat.G501.T8mRNA
Cucsat.G501.T9Cucsat.G501.T9mRNA
Cucsat.G501.T11Cucsat.G501.T11mRNA
Cucsat.G501.T3Cucsat.G501.T3mRNA
Cucsat.G501.T6Cucsat.G501.T6mRNA
Cucsat.G501.T7Cucsat.G501.T7mRNA
Cucsat.G501.T4Cucsat.G501.T4mRNA
Cucsat.G501.T10Cucsat.G501.T10mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044030 regulation of DNA methylation
cellular_component GO:0000419 RNA polymerase V complex
cellular_component GO:0005634 nucleus