Cucsat.G4978 (gene) Cucumber (B10) v3

Overview
NameCucsat.G4978
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptioncentriolin-like
Locationctg1227: 1183104 .. 1183672 (-)
RNA-Seq ExpressionCucsat.G4978
SyntenyCucsat.G4978
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTTTGAACATAAAATCAGCAAACACAATCGTCTTCCTCCGACCCATCCATTTCTCAAAATTTTCCAATTCCCAACAAAAAGAAAAATGAGTGTTCCTCAAGAACCAATTTCTACACAAACACTTGAATCCAAACTCCTCTCTTCTCAGTCCCAATGCCTCTTTTTACAATCTAAATTAAACAGTGCCAAGGCAATTCCATCCTTGATCTCTTTTTTCTTATTTATTTATTGCAATAACAAATGTTATTATCATTATTATTATAATTCATTAATTCTTCATCTTTTTATTTATTAAGGAAGAAGCGAAACTGAATGCACAAGGCTTGAAGAAGGCAATTGAACAGAACCGAATACTGAGGGAAGAGCGTTCATGTTTGGTTGAAGAATTGAAGACGTTGAAAGACTTTATTAACAAAGGAAAATCAACTCTTGATCGTGCTCGAGAAACCCAAATTCGTGTCCATGAATTGGAAAAAGAAGTTGAAATTTTAAAATTGGATTTGAATTTCTTCAAGTATCAACACCAAATGCAAAAGGTTAATCTCTAAAAATTAAACATCCTTTTCATCAATATCAAAAGTAATAATGCATGGTTACGTTGATTTGGTTTTACTTTTAGTAGTTTCAATTTTCACATATGGAAGAAGCTTTGATTGAGTCCGCTTTATCTAAATTAATGGGAAAAG

Coding sequence (CDS)

ATCTTTGAACATAAAATCAGCAAACACAATCGTCTTCCTCCGACCCATCCATTTCTCAAAATTTTCCAATTCCCAACAAAAAGAAAAATGAGTGTTCCTCAAGAACCAATTTCTACACAAACACTTGAATCCAAACTCCTCTCTTCTCAGTCCCAATGCCTCTTTTTACAATCTAAATTAAACAGTGCCAAGGAAGAAGCGAAACTGAATGCACAAGGCTTGAAGAAGGCAATTGAACAGAACCGAATACTGAGGGAAGAGCGTTCATGTTTGGTTGAAGAATTGAAGACGTTGAAAGACTTTATTAACAAAGGAAAATCAACTCTTGATCGTGCTCGAGAAACCCAAATTCGTGTCCATGAATTGGAAAAAGAAGTTGAAATTTTAAAATTGGATTTGAATTTCTTCAAGTATCAACACCAAATGCAAAAGTTTCAATTTTCACATATGGAAGAAGCTTTGATTGAGTCCGCTTTATCTAAATTAATGGGAAAA

Protein sequence

IFEHKISKHNRLPPTHPFLKIFQFPTKRKMSVPQEPISTQTLESKLLSSQSQCLFLQSKLNSAKEEAKLNAQGLKKAIEQNRILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEKEVEILKLDLNFFKYQHQMQKFQFSHMEEALIESALSKLMGK
Homology
BLAST of Cucsat.G4978 vs. NCBI nr
Match: XP_038885825.1 (uncharacterized protein LOC120076121 [Benincasa hispida])

HSP 1 Score: 107 bits (266), Expect = 2.42e-25
Identity = 58/80 (72.50%), Postives = 66/80 (82.50%), Query Frame = 0

Query: 65  EEAKLNAQGLKKAIEQNRILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEK 124
           EEAKLNAQGLKKAIE+N+ L EE S LVE+ K +K F+N+GK  LDRA+ETQ+RVHELE 
Sbjct: 30  EEAKLNAQGLKKAIEKNQQLSEENSRLVEQCKKMKAFMNRGKLALDRAKETQVRVHELED 89

Query: 125 EVEILKLDLNFFKYQHQMQK 144
           EVE LKLDL FFK QHQM K
Sbjct: 90  EVEELKLDLKFFKDQHQMNK 109

BLAST of Cucsat.G4978 vs. NCBI nr
Match: XP_022131622.1 (uncharacterized protein LOC111004753 [Momordica charantia])

HSP 1 Score: 87.8 bits (216), Expect = 1.21e-17
Identity = 62/123 (50.41%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQS-------QCLFLQSKLN-------SAKEEAKLNAQGLKKAIEQN 95
           P+S  TLE KL++S++       QCL LQSKLN       S+K EAKL+AQ LKKAIE+N
Sbjct: 23  PVSKHTLELKLVASEAAQQHLRVQCLSLQSKLNHQILAAQSSKAEAKLSAQALKKAIEKN 82

Query: 96  RILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEKEVEILKLDLNFFKYQHQ 144
             L EE S L  + K LK F NK K  +DRA E   RV ELE+E+  L  DL FF+ Q+Q
Sbjct: 83  GDLSEENSALTLQCKKLKAFANKLKMAVDRANEETARVRELEQEMNELTDDLYFFQNQYQ 142

BLAST of Cucsat.G4978 vs. NCBI nr
Match: KAG7020228.1 (hypothetical protein SDJN02_16911, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 1.45e-15
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQS-------QCLFLQSKLN-------SAKEEAKLNAQGLKKAIEQN 95
           P+STQTL  KL +S++       QCL LQSKLN       +A+ EA ++AQGLKKAIE+N
Sbjct: 16  PVSTQTLALKLAASEATQRRLEAQCLSLQSKLNQHIRSTKAAQAEAMMSAQGLKKAIERN 75

Query: 96  RILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEKEVEILKLDLNFFKYQHQ 144
             L +E S L ++LK +K   ++GK  +  A+E + R  +L  E   L  DLNFFK Q+Q
Sbjct: 76  ERLSKENSRLEDQLKRMKVIASRGKMAIHGAKEAEDRARKLNDEATKLTEDLNFFKEQYQ 135

BLAST of Cucsat.G4978 vs. NCBI nr
Match: KAG6585310.1 (hypothetical protein SDJN03_18043, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.4 bits (202), Expect = 1.54e-15
Identity = 56/123 (45.53%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQS-------QCLFLQSKLN-------SAKEEAKLNAQGLKKAIEQN 95
           P+STQTL  KL +S++       QCL LQSKLN       +A+ EA ++AQGLKKAIE+N
Sbjct: 21  PVSTQTLALKLAASEATQRRLEAQCLSLQSKLNQHIRSTKAAQAEAMMSAQGLKKAIERN 80

Query: 96  RILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEKEVEILKLDLNFFKYQHQ 144
             L +E S L ++LK +K   ++GK  +  A+E + R  +L  E   L  DLNFFK Q+Q
Sbjct: 81  ERLSKENSRLEDQLKRMKVIASRGKMAIHGAKEAEDRARKLNDEATKLTEDLNFFKEQYQ 140

BLAST of Cucsat.G4978 vs. NCBI nr
Match: XP_027149444.1 (centriolin-like [Coffea eugenioides])

HSP 1 Score: 68.2 bits (165), Expect = 3.29e-10
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQ-------SQCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           P+STQTL+ KL +++       +Q L LQSKL         A+ EA LNAQ LKK +E+N
Sbjct: 22  PVSTQTLQLKLRAAEEAQYHLRNQYLHLQSKLREKDEIIERARAEATLNAQALKKFVEEN 81

Query: 96  RIL------------REERSCLV--EELKTLKDFINKGKSTLDRARETQIRVHELEKEVE 145
           + L            R ER C +   + + L DF   G    +RA+E ++RVHELE EV+
Sbjct: 82  QKLAMECANLLGQCKRWERECSLYDHDREALMDF---GNEADERAKEAEVRVHELEDEVK 141

BLAST of Cucsat.G4978 vs. ExPASy TrEMBL
Match: A0A6J1BRI9 (uncharacterized protein LOC111004753 OS=Momordica charantia OX=3673 GN=LOC111004753 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.85e-18
Identity = 62/123 (50.41%), Postives = 77/123 (62.60%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQS-------QCLFLQSKLN-------SAKEEAKLNAQGLKKAIEQN 95
           P+S  TLE KL++S++       QCL LQSKLN       S+K EAKL+AQ LKKAIE+N
Sbjct: 23  PVSKHTLELKLVASEAAQQHLRVQCLSLQSKLNHQILAAQSSKAEAKLSAQALKKAIEKN 82

Query: 96  RILREERSCLVEELKTLKDFINKGKSTLDRARETQIRVHELEKEVEILKLDLNFFKYQHQ 144
             L EE S L  + K LK F NK K  +DRA E   RV ELE+E+  L  DL FF+ Q+Q
Sbjct: 83  GDLSEENSALTLQCKKLKAFANKLKMAVDRANEETARVRELEQEMNELTDDLYFFQNQYQ 142

BLAST of Cucsat.G4978 vs. ExPASy TrEMBL
Match: A0A6P6USV6 (centriolin-like OS=Coffea arabica OX=13443 GN=LOC113713845 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.60e-10
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQ-------SQCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           P+STQTL+ KL +++       +Q L LQSKL         A+ EA LNAQ LKK +E+N
Sbjct: 22  PVSTQTLQLKLRAAEEAQYHLRNQYLHLQSKLREKDEIIERARAEATLNAQALKKFVEEN 81

Query: 96  RIL------------REERSCLV--EELKTLKDFINKGKSTLDRARETQIRVHELEKEVE 145
           + L            R ER C +   + + L DF   G    +RA+E ++RVHELE EV+
Sbjct: 82  QKLAMECANLLGQCKRWERECSLYDHDREALMDF---GNEADERAKEAEVRVHELEDEVK 141

BLAST of Cucsat.G4978 vs. ExPASy TrEMBL
Match: A0A6A4LS94 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_10711 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.89e-10
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQS-------QCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           P+STQTLESKL +S++       QCL+LQ++L         ++ E+ +NAQ LKK +E+N
Sbjct: 22  PVSTQTLESKLNASEAACNRLRQQCLYLQTRLKEKDDVIDRSRAESCMNAQALKKFVEEN 81

Query: 96  RILREERSCLVEELK--------------TLKDFINKGKSTLDRARETQIRVHELEKEVE 146
           + L +E   L+ + +               L DF   G    +RA+E ++RVHELE E+ 
Sbjct: 82  QKLAKECESLLGQCRRWENECSLYDHDREALMDF---GNEADERAKEAEVRVHELEGELS 141

BLAST of Cucsat.G4978 vs. ExPASy TrEMBL
Match: A0A068VJT0 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007436001 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.13e-10
Identity = 55/138 (39.86%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQ-------SQCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           P+STQTL+SKL +++       +Q L LQSKL         A+ EA LNAQ LKK +E+N
Sbjct: 22  PVSTQTLQSKLRAAEEAQYHLRNQYLLLQSKLREKDEIIERARAEATLNAQALKKFVEEN 81

Query: 96  RIL------------REERSCLV--EELKTLKDFINKGKSTLDRARETQIRVHELEKEVE 145
           + L            R ER C +   + + L DF   G    +RA+E ++RVHELE EV+
Sbjct: 82  QKLAMECANLLGQCKRWERECSLYDHDREALMDF---GNEADERAKEAEVRVHELEDEVK 141

BLAST of Cucsat.G4978 vs. ExPASy TrEMBL
Match: A0A484LDJ9 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS16239 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.71e-10
Identity = 53/134 (39.55%), Postives = 75/134 (55.97%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQ-------SQCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           P+S +TL+SKL +SQ       +QCLFLQSKL         A+ EA +NA  LKK +E+N
Sbjct: 22  PVSKETLQSKLEASQQSEFLLRNQCLFLQSKLKEKDGVLERARAEASMNAVALKKFVEEN 81

Query: 96  RIL------------REERSCLV--EELKTLKDFINKGKSTLDRARETQIRVHELEKEVE 141
           + L            R +R C +  E+ + L DF   G     RA+E ++RV ELE EVE
Sbjct: 82  QKLALECSNLLEQSNRWQRECSLYDEDREALMDF---GNEVEQRAKEAELRVQELEAEVE 141

BLAST of Cucsat.G4978 vs. TAIR 10
Match: AT1G14680.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G09060.1); Has 8132 Blast hits to 6366 proteins in 685 species: Archae - 171; Bacteria - 671; Metazoa - 4046; Fungi - 445; Plants - 318; Viruses - 23; Other Eukaryotes - 2458 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 5.8e-05
Identity = 40/116 (34.48%), Postives = 56/116 (48.28%), Query Frame = 0

Query: 36  PISTQTLESKLLSSQ-------SQCLFLQSKLNS-------AKEEAKLNAQGLKKAIEQN 95
           PIS   L+ KL +++        Q L L S+L          + EA +NAQ LKK +E+N
Sbjct: 22  PISMDVLQKKLYTAEESQRRLREQYLSLVSRLKEKEKVIDLVRSEASMNAQSLKKFVEEN 81

Query: 96  RILREERSCLVEELK-----------TLKDFINKGKSTLDRARETQIRVHELEKEV 127
           + L  ER  LV + K             +  +  G  T +RARE + RV ELE+EV
Sbjct: 82  QKLGSEREDLVNQCKKWEKECFLYHQDRESLMEFGNETDERAREAESRVRELEEEV 137

BLAST of Cucsat.G4978 vs. TAIR 10
Match: AT4G09060.1 (unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1); Has 8168 Blast hits to 6036 proteins in 601 species: Archae - 151; Bacteria - 570; Metazoa - 4684; Fungi - 544; Plants - 345; Viruses - 91; Other Eukaryotes - 1783 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 40/129 (31.01%), Postives = 62/129 (48.06%), Query Frame = 0

Query: 36  PISTQTLESKL---------LSSQSQCLFLQSK-----LNSAKEEAKLNAQGLKKAIEQN 95
           PIS ++L+ KL         L  Q Q L  + K     ++  + EA +NAQ LKK +E+N
Sbjct: 38  PISMESLQKKLYTAEESQRRLREQYQGLISRLKEKDHVIDRVRSEASMNAQALKKFVEEN 97

Query: 96  RILREERSCLVEELKTLKD-----------FINKGKSTLDRARETQIRVHELEKEVEILK 140
           + L  E   L+ + K L+             +  G  + +RARE + RV ELE E+  + 
Sbjct: 98  QKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGNESDERAREAEARVRELEDEIGRMS 157

BLAST of Cucsat.G4978 vs. TAIR 10
Match: AT4G09060.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14680.1). )

HSP 1 Score: 43.1 bits (100), Expect = 2.2e-04
Identity = 40/129 (31.01%), Postives = 62/129 (48.06%), Query Frame = 0

Query: 36  PISTQTLESKL---------LSSQSQCLFLQSK-----LNSAKEEAKLNAQGLKKAIEQN 95
           PIS ++L+ KL         L  Q Q L  + K     ++  + EA +NAQ LKK +E+N
Sbjct: 38  PISMESLQKKLYTAEESQRRLREQYQGLISRLKEKDHVIDRVRSEASMNAQALKKFVEEN 97

Query: 96  RILREERSCLVEELKTLKD-----------FINKGKSTLDRARETQIRVHELEKEVEILK 140
           + L  E   L+ + K L+             +  G  + +RARE + RV ELE E+  + 
Sbjct: 98  QKLASECGNLLSQCKKLEKECLLYHQDRDALMEFGNESDERAREAEARVRELEDEIGRMS 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_038885825.12.42e-2572.50uncharacterized protein LOC120076121 [Benincasa hispida][more]
XP_022131622.11.21e-1750.41uncharacterized protein LOC111004753 [Momordica charantia][more]
KAG7020228.11.45e-1545.53hypothetical protein SDJN02_16911, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585310.11.54e-1545.53hypothetical protein SDJN03_18043, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_027149444.13.29e-1039.86centriolin-like [Coffea eugenioides][more]
Match NameE-valueIdentityDescription
A0A6J1BRI95.85e-1850.41uncharacterized protein LOC111004753 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6P6USV61.60e-1039.86centriolin-like OS=Coffea arabica OX=13443 GN=LOC113713845 PE=4 SV=1[more]
A0A6A4LS941.89e-1036.69Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
A0A068VJT04.13e-1039.86Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00007436001 PE=4 ... [more]
A0A484LDJ97.71e-1039.55Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS16239 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT1G14680.15.8e-0534.48unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G09060.12.2e-0431.01unknown protein; LOCATED IN: membrane; EXPRESSED IN: leaf; BEST Arabidopsis thal... [more]
AT4G09060.22.2e-0431.01unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 74..94
NoneNo IPR availableCOILSCoilCoilcoord: 112..139

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G4978.T2Cucsat.G4978.T2mRNA
Cucsat.G4978.T1Cucsat.G4978.T1mRNA