Cucsat.G4933 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G4933
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	SANT domain-containing protein
Location	ctg1227: 500382 .. 502625 (-)
RNA-Seq Expression	Cucsat.G4933
Synteny	Cucsat.G4933

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTAAAAAAGTGGCGAGAAAGATGGTCTTCGTGTTGGATTAAATTTATTGCAAGTAGCGAAGGAAATATGCAATGGGGACGAACCAACAATTTAATTGTATTGAAAATAGTATCAGTGTGTTATTGCGTAGGCTAAGAATTGGATCTAATCCCTCCACCAGCCTATAAGTTCTCAAGAATTTCCTAATGGTGATGAAGTGATGATATTTTAAGTGACAATAACAGTGCTTTGAAAAGATTTTACGACTCGTTTGGTCGGTCACTTGCACTTTCTCAAGCAAAGGGAATCGCCCTAAAACCTTATTCTTCAACTTATTTAATCCCACTATCATCACCTTGAGTATATAAGAAGCACTCAGAGCCCACATTTTCACACCAAACCTTGACTTGGTCCTCTTCTTAAACGGGATCCTTAAGTCTCTTTCTTACGGCCATTATTTCTTCGGCTTTCTTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTGTAAGACAAACAATATATCTTCACCCTTTCAAAACTTTTCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGTAACGTTCTTAATACTCTTAAGCGTGTTTTTTATGTCATGTATCTCTATCCTATAGTTTCATTCTCGGAAAATCATTCAAAACCTTCGAGTATTCAGTTCTTAATGAAAAAAGACCTTCAAAATAACACGATTCTTACTAGTGTCCCTAGAAAAACAACTTATAAGAGAAAAGGTATCCATCTTTATTAGGTGAACCAACCTCCCATGTTTCTTCAAAGGCATACTATTATCCAATTTTGGAATTTAAATCCATAAGACTTTGTTTTTAGTTTCATTCAAAAATCTCATACCGATAGCAATAACGTCCTTAGTTATTTATATAACATGGATCTTCTCTTTTCGAGTGAATGTTAGACTACACGTATATGTTTCTTTCCCAACCATCCTCAGACTAAAATTTCAATTTCCTTTTCATCATTTACCCAATGGAAGTTCAAATGGCTGCAAGGCTATATAAAAGGAAATAATCAATCTCAACTGAATTTCTATAAACAGTATGTGTAGAGGAGAGAAAGAAGATGATATTATTTTATGTCCATGTATCCTTACGTACCACGTTCTCCCTTTTCCTACTCGATTAGCAACAACTTAAATCCCAACACCGACAACTCTCTTTTCTACAAAGACTTCATGCTATTCCTATTCTATTCATGCATTCCCTCTTCCTCTTTCTAAGAAAAAGACCACGTGAAATCTAATCTCCCATGCTTTAAATTACTTTGCACGTGATCCTGTATTTCTGACTTTAGACATCTACGTATTTAATTATAAATCCCTTCTTTGAAACTTAGATCTACTTCAGTATTTGGCCACAAAAGTACTAATTAAAAAAAAAAAATTAAGCTAACATGGGTTGCGTTAATTGAACATCGTTGCCTCCTTGAACTATTGCACGCTTATGAAGAATTCCAGTTTAAGTTTAACTAATCTTTTTAATTATCATTCTCTCTTCAAACTATTGCAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTATTATACCAACGATAAAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGGTGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCTTTTCTACCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTATAATCTATTGTAAGTTGTAATCTGATTGTTCATGTACCCGATTTCTCTGCTTTTGTGTACTTCTATCATTACTGTTTCATTCGCGCTTTCCAATCATTAAAGAAAAGAAAAGAAAGGAATACCATGTAATATATTCGTTTGCCTTTATTGTTTATCGCTACGAAAGATACTCCTATGCTACAGGCTAGTCAATGTTATGTCTAATCAGTATAAAGTGGAAGGATCAATTCAATTATATACTCAGCAGCATTTCATCAACTAACTTGT

Coding sequence (CDS)

ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA

Protein sequence

MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ

Homology

[Close]

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-26
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
           +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL 101
           IE+G+VPLPNYK    N  S+ D + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-25
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK +   + +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.9e-25
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-24
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.4e-23
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
           S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+TPEEVK+HY+IL++D+ +
Sbjct: 3   STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 68  IESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 102
           IESGKVP PNY+     G+M  DE+R  +NLK++
Sbjct: 63  IESGKVPFPNYR--TTGGNMKTDEKR-FRNLKIR 93

[Close]

BLAST of Cucsat.G4933 vs. NCBI nr
Match: XP_004152694.1 (protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_022103 [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 1.95e-67
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. NCBI nr
Match: XP_008444724.1 (PREDICTED: protein RADIALIS-like 4 [Cucumis melo])

HSP 1 Score: 202 bits (514), Expect = 1.88e-65
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. NCBI nr
Match: XP_038884277.1 (protein RADIALIS-like 4 [Benincasa hispida])

HSP 1 Score: 193 bits (490), Expect = 8.62e-62
Identity = 95/101 (94.06%), Postives = 97/101 (96.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGSSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           LLQDLMHIESGKVPLPNYKPI  NGS+Y DEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIVSNGSVYADEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. NCBI nr
Match: KAA0065228.1 (protein RADIALIS-like 4 [Cucumis melo var. makuwa])

HSP 1 Score: 187 bits (476), Expect = 9.19e-60
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
          MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR 93
          LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Cucsat.G4933 vs. NCBI nr
Match: XP_022961874.1 (protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-like 4 [Cucurbita maxima] >XP_023545905.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (461), Expect = 2.29e-57
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           L+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL
Match: A0A0A0LPB1 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 9.44e-68
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL
Match: A0A1S3BBS2 (protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 9.09e-66
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKLQ
Sbjct: 61  LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL
Match: A0A5A7VC75 (Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005670 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 4.45e-60
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
          MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDI
Sbjct: 1  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTAEEVKRHYDI 60

Query: 61 LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR 93
          LLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Sbjct: 61 LLQDLMHIESGKVPLPNYKPVVPNGSMYDDEQR 93

[Close]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL
Match: A0A6J1K2Q1 (protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.11e-57
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           L+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL
Match: A0A6J1HFA3 (protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.11e-57
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDI
Sbjct: 1   MATSPFKSSGSSSSSWTPKQNKKFEDALALYPEDTPDRWQKVARTVGGKTAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ 101
           L+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKLQ
Sbjct: 61  LVQDLMHIESGKIPLPNYKPIVSNGTVYGDEQRLMKNLKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 118.6 bits (296), Expect = 2.8e-27
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 8   SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
           +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4   NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68  IESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL 101
           IE+G+VPLPNYK    N  S+ D + R MKNLK+
Sbjct: 64  IETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Cucsat.G4933 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 115.9 bits (289), Expect = 1.8e-26
Identity = 61/104 (58.65%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDI
Sbjct: 1   MASSSM----SSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDI 60

Query: 61  LLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKNLKLQ 102
           L++DLM+IE   VPLP YK +   + +  + D + RLMKN+++Q
Sbjct: 61  LVEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]

BLAST of Cucsat.G4933 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 7.0e-26
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+
Sbjct: 1   MASGSMSSYG--SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDL 60

Query: 61  LLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKNLKLQ 102
           L++D+  IE+G VP P+YK    N   G + D+E+R M+++KLQ
Sbjct: 61  LVRDIESIENGHVPFPDYKTTTGNSNRGRLRDEEKR-MRSMKLQ 101

[Close]

BLAST of Cucsat.G4933 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 113.2 bits (282), Expect = 1.2e-25
Identity = 59/103 (57.28%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDI 60
           MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++
Sbjct: 1   MASSSM--SSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYEL 60

Query: 61  LLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNLKLQ 102
           L+QD+  IE+G VP PNY+      NG +  +E+R M+N++LQ
Sbjct: 61  LVQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKR-MRNMRLQ 100

[Close]

BLAST of Cucsat.G4933 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 110.5 bits (275), Expect = 7.8e-25
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 8  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMH 67
          +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++
Sbjct: 4  NSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLIN 63

Query: 68 IESGKVPLPNYKPIAPNGSMYDD 91
          IE+G+VPLPNYK    N    +D
Sbjct: 64 IETGRVPLPNYKTFESNSRSIND 86

The following BLAST results are available for this feature:

BLAST of Cucsat.G4933 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1A173	4.0e-26	61.70	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	2.6e-25	58.65	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q9SIJ5	9.9e-25	57.69	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	1.7e-24	57.28	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	5.4e-23	55.32	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]

BLAST of Cucsat.G4933 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152694.1	1.95e-67	100.00	protein RADIALIS-like 4 [Cucumis sativus] >KGN62607.1 hypothetical protein Csa_0...	[more]
XP_008444724.1	1.88e-65	97.03	PREDICTED: protein RADIALIS-like 4 [Cucumis melo]	[more]
XP_038884277.1	8.62e-62	94.06	protein RADIALIS-like 4 [Benincasa hispida]	[more]
KAA0065228.1	9.19e-60	96.77	protein RADIALIS-like 4 [Cucumis melo var. makuwa]	[more]
XP_022961874.1	2.29e-57	86.14	protein RADIALIS-like 4 [Cucurbita moschata] >XP_022996692.1 protein RADIALIS-li...	[more]

BLAST of Cucsat.G4933 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPB1	9.44e-68	100.00	SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G361710 PE=4 S...	[more]
A0A1S3BBS2	9.09e-66	97.03	protein RADIALIS-like 4 OS=Cucumis melo OX=3656 GN=LOC103487975 PE=4 SV=1	[more]
A0A5A7VC75	4.45e-60	96.77	Protein RADIALIS-like 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1K2Q1	1.11e-57	86.14	protein RADIALIS-like 4 OS=Cucurbita maxima OX=3661 GN=LOC111491860 PE=4 SV=1	[more]
A0A6J1HFA3	1.11e-57	86.14	protein RADIALIS-like 4 OS=Cucurbita moschata OX=3662 GN=LOC111462510 PE=4 SV=1	[more]

BLAST of Cucsat.G4933 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75250.2	2.8e-27	61.70	RAD-like 6	[more]
AT1G19510.1	1.8e-26	58.65	RAD-like 5	[more]
AT2G21650.1	7.0e-26	57.69	Homeodomain-like superfamily protein	[more]
AT4G39250.1	1.2e-25	57.28	RAD-like 1	[more]
AT1G75250.1	7.8e-25	61.45	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..64 e-value: 2.1E-7 score: 40.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..62 score: 6.39984
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..58 e-value: 1.41732E-6 score: 39.8662
None	No IPR available	GENE3D	1.10.10.60		coord: 7..75 e-value: 1.5E-22 score: 81.2
None	No IPR available	PANTHER	PTHR43952:SF49	BINDING PROTEIN, PUTATIVE-RELATED	coord: 1..93
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..58 e-value: 1.6E-6 score: 28.2
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..93
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 14..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G4933.T1	Cucsat.G4933.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity